Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46964 * 2 1 4 4 C 1.42900 * 113.99967 * 180.02562 * 3 2 1 5 5 H 1.09005 * 112.85003 * 18.80496 * 4 3 2 6 6 C 1.53779 * 113.61316 * 247.49845 * 4 3 2 7 7 C 1.53785 * 87.08093 * 220.01549 * 6 4 3 8 8 H 1.09002 * 113.61570 * 270.88522 * 7 6 4 9 9 N 1.46905 * 113.69113 * 139.98964 * 7 6 4 10 10 C 1.46903 * 110.99622 * 105.93557 * 9 7 6 11 11 C 1.53005 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46692 * 55.00129 * 11 10 9 13 13 C 1.47199 * 109.47117 * 295.00638 * 11 10 9 14 14 N 9.05996 * 125.68025 * 359.18160 * 2 1 3 15 15 C 1.52998 * 109.47269 * 175.00022 * 11 10 9 16 16 C 1.50692 * 109.47111 * 185.00322 * 15 11 10 17 17 H 1.08005 * 120.00419 * 359.97438 * 16 15 11 18 18 C 1.37878 * 119.99992 * 180.02562 * 16 15 11 19 19 N 1.31515 * 120.00119 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00257 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47364 * 89.99605 * 20 18 16 22 22 H 1.48500 * 109.47269 * 209.99694 * 20 18 16 23 23 H 1.48500 * 109.46988 * 329.99590 * 20 18 16 24 24 C 1.53781 * 87.08241 * 25.43228 * 7 6 4 25 25 H 1.08998 * 113.61549 * 89.19632 * 24 7 6 26 26 O 1.42897 * 113.61928 * 220.01767 * 24 7 6 27 27 C 1.42894 * 114.00131 * 209.99686 * 26 24 7 28 28 H 1.09005 * 109.47203 * 59.99809 * 1 2 3 29 29 H 1.09000 * 109.47135 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46874 * 300.00149 * 1 2 3 31 31 H 1.09003 * 109.46735 * 240.00473 * 2 1 3 32 32 H 1.08988 * 109.47053 * 120.00014 * 2 1 3 33 33 H 1.09003 * 113.61775 * 105.47426 * 6 4 3 34 34 H 1.08996 * 113.61960 * 334.56152 * 6 4 3 35 35 H 1.00897 * 110.99581 * 341.98671 * 9 7 6 36 36 H 1.09000 * 109.47373 * 299.99883 * 10 9 7 37 37 H 1.08995 * 109.47013 * 60.00530 * 10 9 7 38 38 H 1.08999 * 109.46850 * 305.00634 * 15 11 10 39 39 H 1.08998 * 109.46675 * 64.99882 * 15 11 10 40 40 H 0.96998 * 120.00573 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.46705 * 179.97438 * 27 26 24 42 42 H 1.08991 * 109.47462 * 299.99928 * 27 26 24 43 43 H 1.09004 * 109.46948 * 60.00454 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9278 0.5457 -0.3247 6 6 4.0029 2.0461 1.3010 7 6 4.9900 2.8313 0.4212 8 1 5.9141 2.2919 0.2134 9 7 5.2233 4.2075 0.8793 10 6 6.5457 4.3366 1.5058 11 6 6.7521 5.7803 1.9685 12 1 5.9308 6.0731 2.6226 13 6 6.7875 6.6707 0.7969 14 7 6.8144 7.3585 -0.1051 15 6 8.0743 5.8876 2.7308 16 6 8.2193 7.2787 3.2916 17 1 7.4461 8.0132 3.1210 18 6 9.3398 7.6144 4.0216 19 7 10.2817 6.7203 4.2290 20 14 9.5194 9.3386 4.7174 21 1 8.9233 9.3885 6.0767 22 1 10.9592 9.6936 4.7950 23 1 8.8183 10.3044 3.8337 24 6 3.9484 2.7253 -0.7052 25 1 3.2308 3.5457 -0.7149 26 8 4.5189 2.4720 -1.9906 27 6 3.7662 3.0138 -3.0776 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 4.4823 1.3046 1.9401 34 1 3.2994 2.6802 1.8407 35 1 4.4941 4.5075 1.5088 36 1 6.6082 3.6673 2.3639 37 1 7.3176 4.0734 0.7827 38 1 8.0832 5.1643 3.5462 39 1 8.9023 5.6809 2.0528 40 1 11.0702 6.9564 4.7423 41 1 4.2653 2.7790 -4.0178 42 1 2.7661 2.5806 -3.0787 43 1 3.6935 4.0957 -2.9656 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565829428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -76.679839 kcal Electronic energy + Delta-G solvation = -21849.504830 eV Core-core repulsion = 18508.512533 eV Total energy + Delta-G solvation = -3340.992297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01363 -38.66581 -38.16850 -37.08742 -35.71410 -34.69715 -32.63385 -31.55042 -28.30359 -27.93698 -25.44127 -25.12413 -23.81084 -23.50017 -23.33222 -20.98227 -18.63904 -18.43432 -18.20919 -17.54791 -16.71046 -16.61314 -16.40512 -16.06195 -15.69898 -15.37642 -15.24748 -14.79506 -14.31970 -14.15544 -13.98704 -13.82738 -13.71545 -13.40925 -13.24700 -13.13574 -12.97203 -12.69586 -12.64121 -12.47984 -12.36759 -12.28574 -12.11171 -12.01930 -11.88293 -11.71130 -11.39733 -11.17376 -10.79425 -10.53982 -10.22118 -9.26188 -8.18753 -6.26726 1.40454 1.42729 1.51793 2.08761 2.15729 2.41051 2.45876 3.10271 3.16648 3.29587 3.39415 3.55190 3.58373 3.86278 3.92033 4.20444 4.23540 4.29432 4.35478 4.40434 4.48554 4.51791 4.53837 4.59718 4.76193 4.79150 4.80177 4.86461 4.93469 5.00929 5.03373 5.05821 5.13435 5.28914 5.48418 5.63917 5.80384 6.00195 6.16376 6.22653 6.38135 6.52587 6.84463 6.94763 7.41811 8.92161 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.002991 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.016662 B = 9358.182317 C = 9884.183991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.393 6.393 4 C 0.056 3.944 5 H 0.101 0.899 6 C -0.167 4.167 7 C 0.076 3.924 8 H 0.107 0.893 9 N -0.689 5.689 10 C 0.081 3.919 11 C 0.019 3.981 12 H 0.122 0.878 13 C 0.265 3.735 14 N -0.517 5.517 15 C 0.038 3.962 16 C -0.539 4.539 17 H 0.054 0.946 18 C 0.011 3.989 19 N -0.923 5.923 20 Si 0.948 3.052 21 H -0.265 1.265 22 H -0.285 1.285 23 H -0.277 1.277 24 C 0.069 3.931 25 H 0.088 0.912 26 O -0.395 6.395 27 C 0.030 3.970 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.354 0.646 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.038 0.962 39 H -0.001 1.001 40 H 0.264 0.736 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.081 -16.949 -6.251 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.312 6.312 4 C -0.003 4.003 5 H 0.119 0.881 6 C -0.207 4.207 7 C -0.035 4.035 8 H 0.125 0.875 9 N -0.320 5.320 10 C -0.049 4.049 11 C -0.003 4.003 12 H 0.140 0.860 13 C -0.051 4.051 14 N -0.194 5.194 15 C -0.001 4.001 16 C -0.577 4.577 17 H 0.072 0.928 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.774 3.226 21 H -0.190 1.190 22 H -0.211 1.211 23 H -0.202 1.202 24 C 0.010 3.990 25 H 0.106 0.894 26 O -0.313 6.313 27 C -0.066 4.066 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.175 0.825 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.018 0.982 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.068 0.932 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.619 -15.642 -8.172 24.937 hybrid contribution 0.299 0.405 1.354 1.444 sum -17.320 -15.237 -6.818 24.055 Atomic orbital electron populations 1.21769 0.93007 1.03325 1.02607 1.22706 0.96254 0.83016 1.00765 1.87914 1.20631 1.27980 1.94678 1.24124 0.81210 0.98619 0.96377 0.88096 1.23867 0.98743 1.01207 0.96848 1.22975 0.97837 0.88474 0.94211 0.87526 1.60209 1.04381 1.22109 1.45320 1.21906 0.91025 0.93268 0.98720 1.19218 1.02319 0.90810 0.87929 0.86023 1.29372 0.90205 0.92235 0.93302 1.80918 1.11842 1.12428 1.14253 1.18986 0.90042 0.96493 0.94559 1.21562 1.04761 0.98357 1.32994 0.92812 1.25710 0.95709 1.00609 0.96772 1.70028 1.09561 1.35637 1.41122 0.85696 0.77181 0.80505 0.79189 1.19046 1.21077 1.20223 1.24416 0.95361 0.96622 0.82644 0.89363 1.87865 1.50966 1.77564 1.14937 1.22871 0.96315 0.97573 0.89879 0.92528 0.89238 0.92222 0.92919 0.92349 0.88602 0.88319 0.82519 0.90750 0.91413 0.94358 0.98216 0.92722 0.88595 0.93228 0.94458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.05 0.69 6.50 71.98 0.47 1.15 16 3 O -0.39 -7.71 10.35 -148.98 -1.54 -9.26 16 4 C 0.06 1.03 4.14 31.12 0.13 1.16 16 5 H 0.10 1.71 7.87 -2.38 -0.02 1.69 16 6 C -0.17 -2.77 7.54 31.12 0.23 -2.54 16 7 C 0.08 1.61 3.99 45.44 0.18 1.79 16 8 H 0.11 2.34 7.88 -2.39 -0.02 2.32 16 9 N -0.69 -16.79 6.32 -488.82 -3.09 -19.88 16 10 C 0.08 2.22 4.90 86.30 0.42 2.64 16 11 C 0.02 0.67 2.35 -12.60 -0.03 0.64 16 12 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 13 C 0.26 11.08 13.66 89.46 1.22 12.30 16 14 N -0.52 -23.91 18.53 19.99 0.37 -23.54 16 15 C 0.04 1.74 4.42 29.84 0.13 1.87 16 16 C -0.54 -28.47 8.60 25.60 0.22 -28.25 16 17 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 18 C 0.01 0.60 5.46 84.65 0.46 1.06 16 19 N -0.92 -52.99 13.29 21.45 0.28 -52.70 16 20 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 C 0.07 1.55 3.94 31.12 0.12 1.67 16 25 H 0.09 2.12 7.87 -2.39 -0.02 2.10 16 26 O -0.39 -9.96 10.71 -148.98 -1.60 -11.55 16 27 C 0.03 0.61 10.85 113.37 1.23 1.84 16 28 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 1.61 7.83 -2.39 -0.02 1.60 16 35 H 0.35 7.44 8.21 -89.70 -0.74 6.70 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 41 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -66.45 366.23 2.24 -64.22 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.24 Total: 12.84 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 5.53 Total: -5.66 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -2.43 Total: -96.12 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -3.14 Total: -20.81 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -66.45 2.24 -64.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565829428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.461 kcal (2) G-P(sol) polarization free energy of solvation -66.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds