Wall clock time and date at job start Tue Mar 31 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47102 * 2 1 4 4 C 1.42897 * 114.00082 * 180.02562 * 3 2 1 5 5 H 1.09007 * 112.85159 * 18.80358 * 4 3 2 6 6 C 1.54049 * 113.61450 * 247.48948 * 4 3 2 7 7 C 1.53781 * 86.98600 * 270.88608 * 6 4 3 8 8 H 1.08996 * 113.61238 * 219.97836 * 7 6 4 9 9 N 1.46900 * 113.61449 * 89.15956 * 7 6 4 10 10 C 1.46904 * 110.99779 * 105.86387 * 9 7 6 11 11 C 1.52996 * 109.46858 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47753 * 305.00128 * 11 10 9 13 13 C 1.47204 * 109.47042 * 64.99895 * 11 10 9 14 14 N 5.41965 * 69.94772 * 38.89290 * 2 1 3 15 15 C 1.52996 * 109.47153 * 184.99851 * 11 10 9 16 16 C 1.50702 * 109.47159 * 175.00123 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.53778 * 87.17217 * 334.56826 * 7 6 4 25 25 H 1.08997 * 113.61740 * 270.92936 * 24 7 6 26 26 O 1.42904 * 113.61382 * 140.10496 * 24 7 6 27 27 C 1.42906 * 113.99650 * 149.99985 * 26 24 7 28 28 H 1.08996 * 109.47464 * 300.00045 * 1 2 3 29 29 H 1.09004 * 109.47361 * 60.00389 * 1 2 3 30 30 H 1.09010 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47464 * 239.99954 * 2 1 3 32 32 H 1.09004 * 109.47361 * 119.99611 * 2 1 3 33 33 H 1.09000 * 113.61468 * 156.37684 * 6 4 3 34 34 H 1.09004 * 113.69197 * 25.40181 * 6 4 3 35 35 H 1.00899 * 110.99585 * 229.81618 * 9 7 6 36 36 H 1.08997 * 109.46933 * 59.99775 * 10 9 7 37 37 H 1.08996 * 109.47325 * 299.99917 * 10 9 7 38 38 H 1.09004 * 109.47066 * 55.00326 * 15 11 10 39 39 H 1.08994 * 109.47405 * 295.00156 * 15 11 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.46594 * 180.02562 * 27 26 24 42 42 H 1.08996 * 109.47085 * 300.00135 * 27 26 24 43 43 H 1.08995 * 109.47094 * 60.00482 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9278 0.5457 -0.3247 6 6 4.0038 2.0474 1.3032 7 6 3.8395 3.4327 0.6560 8 1 4.6666 4.1119 0.8624 9 7 2.5256 4.0434 0.8985 10 6 2.6238 5.1301 1.8821 11 6 1.2391 5.7405 2.1075 12 1 0.8210 6.0560 1.1515 13 6 0.3547 4.7371 2.7224 14 7 -0.3283 3.9625 3.1965 15 6 1.3601 6.9508 3.0355 16 6 0.0180 7.6249 3.1596 17 1 -0.8360 7.2294 2.6299 18 6 -0.1210 8.7430 3.9544 19 7 0.9189 9.2244 4.5997 20 14 -1.7863 9.5740 4.1143 21 1 -2.5299 8.9776 5.2529 22 1 -1.5935 11.0265 4.3556 23 1 -2.5594 9.3787 2.8616 24 6 3.9482 2.7254 -0.7052 25 1 4.9715 2.6346 -1.0696 26 8 3.0516 3.2407 -1.6913 27 6 3.5378 3.1349 -3.0309 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0278 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.0422 1.7716 1.4869 34 1 3.3637 1.8926 2.1718 35 1 2.1148 4.3712 0.0372 36 1 3.3024 5.8972 1.5095 37 1 3.0045 4.7345 2.8238 38 1 2.0833 7.6543 2.6227 39 1 1.6940 6.6221 4.0196 40 1 0.8212 10.0112 5.1586 41 1 2.8001 3.5480 -3.7189 42 1 4.4713 3.6900 -3.1235 43 1 3.7131 2.0866 -3.2721 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565829429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:23 Heat of formation + Delta-G solvation = -44.983935 kcal Electronic energy + Delta-G solvation = -22605.605403 eV Core-core repulsion = 19265.987544 eV Total energy + Delta-G solvation = -3339.617859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09844 -37.16031 -36.92561 -35.65762 -33.96728 -32.91548 -31.04656 -30.37527 -27.20902 -26.42911 -24.54648 -23.91168 -22.82058 -22.39214 -21.63133 -19.31842 -17.36313 -17.08172 -16.36978 -16.18740 -15.81745 -15.61781 -15.32789 -14.76023 -14.45757 -13.93941 -13.76997 -13.38347 -13.33546 -12.80059 -12.63072 -12.51911 -12.23535 -11.95639 -11.78365 -11.71001 -11.60341 -11.42810 -11.18949 -11.02472 -10.98932 -10.85457 -10.73627 -10.56950 -10.44722 -10.11756 -9.66598 -9.40665 -9.21138 -9.12912 -8.39665 -8.01233 -6.03733 -4.06119 3.34360 3.38024 3.40576 3.44592 3.84182 3.89690 4.00550 4.23230 4.46620 4.50866 4.67807 4.78252 4.92627 4.98050 5.06637 5.09014 5.20193 5.21384 5.28969 5.34599 5.35152 5.46132 5.51326 5.61781 5.73331 5.79015 5.88285 5.94917 6.09284 6.12434 6.17363 6.22856 6.53612 6.62217 6.98605 7.31642 7.49652 7.51155 7.61437 7.82890 7.92435 8.30824 8.74871 8.99011 9.58899 11.07308 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.003880 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.649873 B = 7215.039009 C = 7739.672728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.326 6.326 4 C 0.063 3.937 5 H 0.062 0.938 6 C -0.161 4.161 7 C 0.079 3.921 8 H 0.061 0.939 9 N -0.657 5.657 10 C 0.068 3.932 11 C 0.011 3.989 12 H 0.098 0.902 13 C 0.258 3.742 14 N -0.481 5.481 15 C 0.032 3.968 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.054 3.946 25 H 0.096 0.904 26 O -0.356 6.356 27 C 0.031 3.969 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.356 0.644 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.085 0.915 42 H 0.038 0.962 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.417 -15.418 -14.116 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.243 6.243 4 C 0.003 3.997 5 H 0.080 0.920 6 C -0.200 4.200 7 C -0.032 4.032 8 H 0.078 0.922 9 N -0.290 5.290 10 C -0.062 4.062 11 C -0.011 4.011 12 H 0.116 0.884 13 C -0.059 4.059 14 N -0.158 5.158 15 C -0.007 4.007 16 C -0.562 4.562 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.005 4.005 25 H 0.113 0.887 26 O -0.273 6.273 27 C -0.066 4.066 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.177 0.823 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.923 -16.663 -12.795 22.825 hybrid contribution 0.295 1.143 -0.610 1.329 sum 9.217 -15.520 -13.405 22.484 Atomic orbital electron populations 1.21692 0.93718 1.01614 1.03629 1.22475 0.95812 0.84690 0.98983 1.88163 1.17676 1.24383 1.94107 1.23498 0.83599 0.96563 0.96015 0.91973 1.23545 1.00735 0.96714 0.98961 1.22750 0.92325 0.95404 0.92698 0.92161 1.60159 1.19891 1.33296 1.15692 1.22119 0.96026 0.91706 0.96397 1.19178 0.89884 0.91707 1.00356 0.88404 1.28810 0.92808 0.92076 0.92181 1.80963 1.11045 1.12756 1.11010 1.19160 0.98229 0.89442 0.93850 1.21172 0.95009 1.11404 1.28587 0.92485 1.24950 0.96620 0.97053 0.95367 1.69946 1.29439 1.23572 1.30247 0.86599 0.84345 0.78520 0.78652 1.20675 1.21165 1.19735 1.24438 0.93171 0.94423 0.88494 0.88663 1.87991 1.42919 1.81943 1.14470 1.22786 0.99606 0.99905 0.84317 0.91422 0.91922 0.91690 0.94306 0.93986 0.89544 0.89172 0.82265 0.93646 0.90855 0.94539 0.95634 0.92887 0.89637 0.94317 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 37.15 0.38 -1.31 16 2 C 0.06 0.65 6.50 37.15 0.24 0.89 16 3 O -0.33 -4.54 9.39 -50.21 -0.47 -5.02 16 4 C 0.06 0.70 4.33 -25.78 -0.11 0.59 16 5 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 6 C -0.16 -1.79 7.73 -25.78 -0.20 -1.99 16 7 C 0.08 0.95 4.17 -66.90 -0.28 0.67 16 8 H 0.06 0.67 7.88 -51.93 -0.41 0.26 16 9 N -0.66 -9.76 5.65 -105.87 -0.60 -10.36 16 10 C 0.07 1.08 4.90 -3.82 -0.02 1.06 16 11 C 0.01 0.21 2.35 -93.41 -0.22 -0.01 16 12 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 13 C 0.26 5.73 13.67 -20.75 -0.28 5.44 16 14 N -0.48 -11.49 18.54 42.17 0.78 -10.71 16 15 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 16 C -0.52 -14.33 8.60 -34.44 -0.30 -14.63 16 17 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 20 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.05 0.56 4.19 -25.92 -0.11 0.45 16 25 H 0.10 0.73 7.87 -51.93 -0.41 0.33 16 26 O -0.36 -4.23 8.97 -50.21 -0.45 -4.68 16 27 C 0.03 0.26 10.85 101.05 1.10 1.35 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.36 5.43 7.38 -39.29 -0.29 5.14 16 36 H 0.05 0.67 8.13 -51.93 -0.42 0.24 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -32.16 363.16 -6.96 -39.12 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.39 Total: -0.06 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -0.02 Total: -5.20 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.92 Total: -46.37 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.92 Total: -9.70 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.16 -6.96 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565829429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.869 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds