Wall clock time and date at job start Tue Mar 31 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42907 * 109.46994 * 2 1 4 4 C 1.42899 * 114.00006 * 179.97438 * 3 2 1 5 5 H 1.08996 * 112.84864 * 18.80965 * 4 3 2 6 6 C 1.54049 * 113.62058 * 247.49984 * 4 3 2 7 7 C 1.53786 * 86.98426 * 220.02259 * 6 4 3 8 8 H 1.09002 * 113.61357 * 270.83585 * 7 6 4 9 9 N 1.46900 * 113.61608 * 140.01769 * 7 6 4 10 10 C 1.46895 * 110.99924 * 105.85932 * 9 7 6 11 11 C 1.53005 * 109.47286 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46810 * 305.00447 * 11 10 9 13 13 C 1.47200 * 109.46963 * 65.00012 * 11 10 9 14 14 N 8.20779 * 115.28889 * 31.28400 * 2 1 3 15 15 C 1.53005 * 109.47295 * 185.00470 * 11 10 9 16 16 C 1.50693 * 109.46970 * 174.99981 * 15 11 10 17 17 H 1.08000 * 120.00385 * 359.97438 * 16 15 11 18 18 C 1.37871 * 120.00071 * 179.97438 * 16 15 11 19 19 N 1.31522 * 120.00241 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99929 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47233 * 89.99632 * 20 18 16 22 22 H 1.48504 * 109.47098 * 209.99744 * 20 18 16 23 23 H 1.48495 * 109.47181 * 329.99927 * 20 18 16 24 24 C 1.53781 * 87.17350 * 25.42668 * 7 6 4 25 25 H 1.08999 * 113.61567 * 89.07405 * 24 7 6 26 26 O 1.42895 * 113.61457 * 219.89406 * 24 7 6 27 27 C 1.42900 * 113.99876 * 209.99995 * 26 24 7 28 28 H 1.09005 * 109.46880 * 59.99895 * 1 2 3 29 29 H 1.09000 * 109.46981 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47057 * 299.99682 * 1 2 3 31 31 H 1.09004 * 109.47278 * 240.00546 * 2 1 3 32 32 H 1.08996 * 109.47342 * 119.99753 * 2 1 3 33 33 H 1.08992 * 113.69868 * 105.50369 * 6 4 3 34 34 H 1.09000 * 113.61076 * 334.52128 * 6 4 3 35 35 H 1.00902 * 110.99925 * 341.90938 * 9 7 6 36 36 H 1.08994 * 109.47448 * 300.00310 * 10 9 7 37 37 H 1.09001 * 109.47145 * 60.00387 * 10 9 7 38 38 H 1.09000 * 109.46837 * 294.99657 * 15 11 10 39 39 H 1.08992 * 109.47048 * 54.99889 * 15 11 10 40 40 H 0.97001 * 119.99669 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.47321 * 60.00253 * 27 26 24 42 42 H 1.09011 * 109.46954 * 180.02562 * 27 26 24 43 43 H 1.08999 * 109.47260 * 299.99442 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9280 0.5458 -0.3229 6 6 4.0030 2.0476 1.3047 7 6 4.9896 2.8316 0.4232 8 1 5.9140 2.2922 0.2164 9 7 5.2225 4.2078 0.8812 10 6 6.5444 4.3371 1.5088 11 6 6.7498 5.7807 1.9724 12 1 6.6000 6.4573 1.1310 13 6 5.7816 6.0972 3.0350 14 7 5.0363 6.3422 3.8537 15 6 8.1719 5.9455 2.5124 16 6 8.4146 7.3928 2.8546 17 1 7.6330 8.1223 2.7019 18 6 9.6345 7.7858 3.3628 19 7 9.8466 9.0491 3.6611 20 14 10.9867 6.5243 3.6264 21 1 11.8125 6.4194 2.3965 22 1 11.8435 6.9471 4.7633 23 1 10.3793 5.2034 3.9288 24 6 3.9489 2.7252 -0.7039 25 1 3.2304 3.5448 -0.7135 26 8 4.5206 2.4734 -1.9890 27 6 3.7681 3.0153 -3.0763 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 4.4826 1.3075 1.9451 34 1 3.2993 2.6824 1.8432 35 1 4.4928 4.5080 1.5101 36 1 6.6062 3.6680 2.3669 37 1 7.3169 4.0738 0.7863 38 1 8.2937 5.3352 3.4073 39 1 8.8875 5.6263 1.7547 40 1 10.7048 9.3255 4.0189 41 1 3.6941 4.0970 -2.9635 42 1 4.2676 2.7810 -4.0164 43 1 2.7684 2.5809 -3.0784 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565829430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:24 Heat of formation + Delta-G solvation = -73.852203 kcal Electronic energy + Delta-G solvation = -21905.603392 eV Core-core repulsion = 18564.733711 eV Total energy + Delta-G solvation = -3340.869681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02629 -38.81928 -38.17280 -37.08273 -35.77232 -34.67517 -32.88449 -31.64203 -28.68274 -27.89852 -25.44675 -25.02618 -23.81078 -23.46248 -23.16646 -20.96273 -18.93650 -18.38537 -18.26566 -17.69518 -16.72246 -16.60497 -16.46747 -16.06669 -15.71954 -15.56214 -15.09986 -14.67244 -14.41897 -14.35139 -14.05191 -14.01192 -13.79932 -13.66917 -13.34341 -13.17649 -12.86448 -12.73262 -12.59333 -12.46630 -12.30381 -12.15884 -12.10687 -12.02985 -11.76378 -11.65065 -11.51330 -11.29409 -10.81216 -10.72085 -10.23026 -9.33235 -8.23900 -6.29639 1.43996 1.46437 1.56810 1.94493 1.95942 2.42070 2.42724 3.09742 3.12151 3.23229 3.27520 3.52874 3.54343 3.82837 3.89782 4.15094 4.17741 4.26836 4.38806 4.41427 4.42770 4.48887 4.59462 4.60434 4.62806 4.77407 4.84625 4.86764 4.90310 4.94146 5.00210 5.02546 5.07978 5.25374 5.25974 5.47763 5.64391 6.00476 6.16981 6.26034 6.28262 6.40430 6.74240 6.80665 7.34845 8.93140 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025398 B = 0.003133 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.190384 B = 8936.065447 C = 9285.338565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.395 6.395 4 C 0.055 3.945 5 H 0.107 0.893 6 C -0.178 4.178 7 C 0.078 3.922 8 H 0.123 0.877 9 N -0.683 5.683 10 C 0.077 3.923 11 C 0.022 3.978 12 H 0.118 0.882 13 C 0.249 3.751 14 N -0.505 5.505 15 C -0.002 4.002 16 C -0.531 4.531 17 H 0.027 0.973 18 C 0.001 3.999 19 N -0.955 5.955 20 Si 0.950 3.050 21 H -0.257 1.257 22 H -0.296 1.296 23 H -0.236 1.236 24 C 0.074 3.926 25 H 0.087 0.913 26 O -0.388 6.388 27 C 0.028 3.972 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.339 0.661 36 H 0.047 0.953 37 H 0.115 0.885 38 H 0.028 0.972 39 H 0.064 0.936 40 H 0.264 0.736 41 H 0.043 0.957 42 H 0.099 0.901 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 -23.316 -12.618 29.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.315 6.315 4 C -0.003 4.003 5 H 0.125 0.875 6 C -0.218 4.218 7 C -0.033 4.033 8 H 0.140 0.860 9 N -0.313 5.313 10 C -0.053 4.053 11 C 0.000 4.000 12 H 0.135 0.865 13 C -0.068 4.068 14 N -0.182 5.182 15 C -0.041 4.041 16 C -0.569 4.569 17 H 0.046 0.954 18 C -0.196 4.196 19 N -0.596 5.596 20 Si 0.773 3.227 21 H -0.182 1.182 22 H -0.223 1.223 23 H -0.159 1.159 24 C 0.015 3.985 25 H 0.105 0.895 26 O -0.306 6.306 27 C -0.068 4.068 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.157 0.843 36 H 0.066 0.934 37 H 0.133 0.867 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.117 0.883 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.473 -22.545 -11.975 28.865 hybrid contribution 0.520 0.057 1.014 1.141 sum -12.953 -22.488 -10.960 28.171 Atomic orbital electron populations 1.21774 0.93119 1.03356 1.02532 1.22713 0.96204 0.82979 1.00830 1.87923 1.20831 1.28072 1.94646 1.24211 0.81156 0.99091 0.95879 0.87528 1.23942 0.99191 1.01370 0.97291 1.23042 0.98275 0.88219 0.93779 0.85967 1.60314 1.04299 1.22129 1.44545 1.22059 0.92024 0.92350 0.98843 1.19125 0.90374 0.99016 0.91476 0.86477 1.29624 0.92260 0.91236 0.93652 1.80963 1.14248 1.10684 1.12332 1.19578 0.91717 0.94994 0.97815 1.21413 0.98985 0.94033 1.42518 0.95425 1.26072 1.01663 0.97302 0.94514 1.70100 1.25154 1.18418 1.45938 0.85659 0.78438 0.80248 0.78340 1.18165 1.22276 1.15850 1.24265 0.95117 0.96227 0.82881 0.89548 1.87863 1.50576 1.77641 1.14567 1.22908 0.96142 0.97901 0.89854 0.92346 0.89133 0.92591 0.92450 0.92604 0.88827 0.89928 0.84256 0.93437 0.86680 0.95317 0.91795 0.92681 0.93856 0.88259 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 2 C 0.05 0.70 6.50 71.98 0.47 1.16 16 3 O -0.40 -7.95 10.36 -148.98 -1.54 -9.50 16 4 C 0.06 1.00 4.15 31.21 0.13 1.13 16 5 H 0.11 1.65 7.87 -2.39 -0.02 1.63 16 6 C -0.18 -3.21 7.55 31.21 0.24 -2.97 16 7 C 0.08 1.52 3.99 45.44 0.18 1.70 16 8 H 0.12 2.16 7.88 -2.39 -0.02 2.14 16 9 N -0.68 -15.98 6.61 -488.85 -3.23 -19.21 16 10 C 0.08 1.87 4.97 86.31 0.43 2.29 16 11 C 0.02 0.73 2.42 -12.60 -0.03 0.70 16 12 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 13 C 0.25 9.79 12.97 89.47 1.16 10.95 16 14 N -0.50 -22.04 18.52 19.98 0.37 -21.67 16 15 C 0.00 -0.08 3.49 29.85 0.10 0.02 16 16 C -0.53 -28.83 9.15 25.60 0.23 -28.60 16 17 H 0.03 1.70 7.84 -2.91 -0.02 1.68 16 18 C 0.00 0.05 5.47 84.65 0.46 0.52 16 19 N -0.96 -59.50 13.96 21.45 0.30 -59.20 16 20 Si 0.95 41.48 27.47 68.60 1.88 43.36 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 22 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.24 -9.12 6.54 99.48 0.65 -8.47 16 24 C 0.07 1.53 3.94 31.12 0.12 1.66 16 25 H 0.09 1.97 7.87 -2.39 -0.02 1.95 16 26 O -0.39 -8.35 10.72 -148.98 -1.60 -9.94 16 27 C 0.03 0.47 10.85 113.37 1.23 1.70 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.70 7.83 -2.39 -0.02 1.68 16 35 H 0.34 8.54 7.28 -89.69 -0.65 7.89 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.12 2.36 8.13 -2.39 -0.02 2.34 16 38 H 0.03 1.14 7.20 -2.39 -0.02 1.13 16 39 H 0.06 2.27 7.57 -2.39 -0.02 2.25 16 40 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 41 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -69.77 361.45 1.92 -67.85 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.27 Total: 19.12 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 5.47 Total: -10.80 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -2.56 Total: -100.09 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -3.14 Total: -19.44 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.88 Total: 43.36 kcal Total: -69.77 1.92 -67.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565829430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.004 kcal (2) G-P(sol) polarization free energy of solvation -69.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds