Wall clock time and date at job start Tue Mar 31 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 120.00190 * 2 1 4 4 N 1.34776 * 119.99974 * 180.27631 * 2 1 3 5 5 C 1.46505 * 120.00191 * 179.72391 * 4 2 1 6 6 H 1.08998 * 109.47205 * 325.00249 * 5 4 2 7 7 C 1.53003 * 109.46903 * 85.00020 * 5 4 2 8 8 C 1.50695 * 109.47010 * 204.99813 * 5 4 2 9 9 O 1.21274 * 120.00499 * 337.26734 * 8 5 4 10 10 N 1.34779 * 119.99526 * 157.26767 * 8 5 4 11 11 C 1.46927 * 120.63290 * 4.79284 * 10 8 5 12 12 C 1.52758 * 109.00943 * 233.58455 * 11 10 8 13 13 C 1.53041 * 109.38543 * 305.58845 * 12 11 10 14 14 C 1.52998 * 109.44956 * 181.25568 * 13 12 11 15 15 C 1.50701 * 109.47214 * 64.93834 * 14 13 12 16 16 H 1.07993 * 120.00051 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99955 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00127 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99857 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47360 * 89.99575 * 19 17 15 21 21 H 1.48507 * 109.46974 * 209.99168 * 19 17 15 22 22 H 1.48493 * 109.47452 * 329.99244 * 19 17 15 23 23 C 1.53038 * 109.53669 * 61.24030 * 13 12 11 24 24 C 1.46925 * 120.63037 * 185.07671 * 10 8 5 25 25 H 1.09003 * 109.46857 * 89.99450 * 1 2 3 26 26 H 1.08992 * 109.47479 * 209.99912 * 1 2 3 27 27 H 1.09001 * 109.47317 * 330.00128 * 1 2 3 28 28 H 0.96994 * 119.99743 * 359.72417 * 4 2 1 29 29 H 1.08996 * 109.47431 * 176.07413 * 7 5 4 30 30 H 1.09003 * 109.47340 * 296.07459 * 7 5 4 31 31 H 1.09002 * 109.46913 * 56.06965 * 7 5 4 32 32 H 1.09003 * 109.58635 * 353.42326 * 11 10 8 33 33 H 1.09005 * 109.58382 * 113.84669 * 11 10 8 34 34 H 1.09006 * 109.56030 * 185.55426 * 12 11 10 35 35 H 1.08999 * 109.35948 * 65.50056 * 12 11 10 36 36 H 1.09002 * 109.45899 * 301.22168 * 13 12 11 37 37 H 1.08997 * 109.47341 * 184.93943 * 14 13 12 38 38 H 1.09002 * 109.46972 * 304.93960 * 14 13 12 39 39 H 0.96999 * 120.00033 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.49672 * 178.68289 * 23 13 12 41 41 H 1.09007 * 109.49733 * 58.58731 * 23 13 12 42 42 H 1.09002 * 109.58970 * 246.15831 * 24 10 8 43 43 H 1.09007 * 109.58541 * 6.43941 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0056 5 6 3.6458 -1.1672 -0.0117 6 1 4.0067 -0.3240 -0.6006 7 6 4.1618 -1.0450 1.4235 8 6 4.1456 -2.4535 -0.6173 9 8 3.4344 -3.4357 -0.6270 10 7 5.3830 -2.5121 -1.1483 11 6 6.2945 -1.3639 -1.0513 12 6 6.7910 -1.0032 -2.4501 13 6 7.4070 -2.2414 -3.1055 14 6 7.9330 -1.8743 -4.4945 15 6 9.0648 -0.8885 -4.3587 16 1 9.3779 -0.5573 -3.3796 17 6 9.7006 -0.4094 -5.4844 18 7 9.3196 -0.8131 -6.6768 19 14 11.1039 0.8119 -5.3160 20 1 12.3895 0.0768 -5.2059 21 1 11.1387 1.6937 -6.5105 22 1 10.8992 1.6363 -4.0980 23 6 6.3435 -3.3342 -3.2354 24 6 5.8439 -3.7234 -1.8405 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6958 -2.0072 -0.0056 29 1 5.2495 -1.1150 1.4258 30 1 3.8588 -0.0834 1.8379 31 1 3.7445 -1.8494 2.0293 32 1 5.7657 -0.5128 -0.6220 33 1 7.1446 -1.6244 -0.4207 34 1 7.5429 -0.2171 -2.3791 35 1 5.9527 -0.6522 -3.0518 36 1 8.2296 -2.6065 -2.4905 37 1 8.2921 -2.7728 -4.9962 38 1 7.1301 -1.4271 -5.0806 39 1 9.7671 -0.4763 -7.4687 40 1 6.7768 -4.2073 -3.7234 41 1 5.5093 -2.9612 -3.8297 42 1 6.6565 -4.1803 -1.2756 43 1 5.0185 -4.4298 -1.9297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570722763.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:58 Heat of formation + Delta-G solvation = -93.938428 kcal Electronic energy + Delta-G solvation = -22804.211245 eV Core-core repulsion = 19462.470559 eV Total energy + Delta-G solvation = -3341.740686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.68913 -39.39321 -37.51793 -35.15325 -34.13072 -32.38950 -31.67154 -30.68824 -29.07959 -28.09405 -25.34600 -23.93017 -22.94086 -21.74132 -20.70896 -19.91928 -18.92192 -17.64293 -16.83850 -16.32039 -16.21111 -15.67734 -15.22474 -14.99148 -14.55463 -14.02963 -13.91137 -13.70925 -13.51733 -13.19160 -12.98012 -12.86666 -12.67148 -12.42049 -12.35013 -12.20705 -11.88697 -11.75775 -11.22479 -11.03658 -10.84434 -10.73743 -10.50053 -10.18296 -10.12236 -9.90001 -9.65155 -9.36103 -9.29782 -9.00993 -8.48085 -8.37363 -6.02178 -4.04481 2.35156 2.50540 2.75481 3.25124 3.29848 3.36897 3.38940 4.27472 4.43458 4.60243 4.87097 4.87558 4.97366 5.07455 5.15256 5.27754 5.32226 5.37197 5.40058 5.44403 5.52102 5.61517 5.62618 5.67620 5.88785 5.92201 5.98511 6.14543 6.28545 6.32600 6.45774 6.58242 6.89672 6.94125 7.06163 7.29816 7.39298 7.63566 7.77643 7.97016 7.99389 8.05354 8.39021 9.01946 9.59646 11.09049 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021267 B = 0.003764 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.262046 B = 7436.586281 C = 8009.858937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.512 3.488 3 O -0.546 6.546 4 N -0.715 5.715 5 C 0.121 3.879 6 H 0.113 0.887 7 C -0.157 4.157 8 C 0.513 3.487 9 O -0.550 6.550 10 N -0.597 5.597 11 C 0.097 3.903 12 C -0.121 4.121 13 C -0.081 4.081 14 C 0.028 3.972 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.130 4.130 24 C 0.112 3.888 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.410 0.590 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.709 -2.465 14.901 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.300 3.700 3 O -0.423 6.423 4 N -0.370 5.370 5 C 0.013 3.987 6 H 0.131 0.869 7 C -0.216 4.216 8 C 0.300 3.700 9 O -0.429 6.429 10 N -0.329 5.329 11 C -0.025 4.025 12 C -0.159 4.159 13 C -0.099 4.099 14 C -0.009 4.009 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.168 4.168 24 C -0.010 4.010 25 H 0.113 0.887 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.247 0.753 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.600 -2.211 14.699 20.147 hybrid contribution 0.717 0.292 -0.165 0.792 sum -12.883 -1.918 14.534 19.516 Atomic orbital electron populations 1.21864 0.91272 1.04884 1.05011 1.20851 0.90736 0.83187 0.75264 1.90739 1.70724 1.31324 1.49563 1.45926 1.05856 1.09723 1.75461 1.20832 0.81949 0.97308 0.98649 0.86889 1.22109 1.01909 1.03439 0.94153 1.20470 0.81669 0.89644 0.78192 1.90645 1.56208 1.37153 1.58857 1.48129 1.13601 1.16625 1.54558 1.22025 0.93081 0.87495 0.99933 1.21849 1.01018 0.99875 0.93156 1.21198 0.95359 0.92812 1.00571 1.19122 0.95704 0.96466 0.89651 1.21227 1.16571 1.25326 0.92436 0.92567 1.25025 0.97276 0.96708 0.95448 1.69964 1.41646 1.44282 0.97552 0.86640 0.82731 0.81294 0.77605 1.20745 1.21295 1.19856 1.22037 0.99688 1.00247 0.94805 1.21720 0.99619 0.86185 0.93429 0.88655 0.90082 0.88767 0.75331 0.90772 0.90745 0.91680 0.90127 0.90961 0.89382 0.92212 0.92227 0.96575 0.96627 0.93025 0.90944 0.92073 0.91561 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.30 36.00 0.37 -0.78 16 2 C 0.51 5.74 7.90 -10.99 -0.09 5.65 16 3 O -0.55 -8.35 16.76 5.56 0.09 -8.26 16 4 N -0.71 -7.75 5.05 -54.93 -0.28 -8.02 16 5 C 0.12 1.44 2.12 -69.08 -0.15 1.30 16 6 H 0.11 1.48 6.05 -51.93 -0.31 1.16 16 7 C -0.16 -1.57 9.21 37.16 0.34 -1.23 16 8 C 0.51 7.12 6.92 -10.99 -0.08 7.04 16 9 O -0.55 -8.76 15.40 5.56 0.09 -8.67 16 10 N -0.60 -8.27 2.98 -173.03 -0.52 -8.79 16 11 C 0.10 1.27 5.65 -3.93 -0.02 1.25 16 12 C -0.12 -2.03 5.17 -26.83 -0.14 -2.17 16 13 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 14 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 15 C -0.52 -13.86 8.39 -34.44 -0.29 -14.14 16 16 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.13 -2.10 5.36 -26.61 -0.14 -2.25 16 24 C 0.11 1.59 6.42 -3.71 -0.02 1.57 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.41 3.96 7.76 -40.82 -0.32 3.64 16 29 H 0.07 0.67 7.15 -51.93 -0.37 0.30 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.93 5.06 -51.93 -0.26 0.66 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.58 6.91 -51.93 -0.36 1.22 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.23 7.04 -51.92 -0.37 0.87 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -32.62 344.96 -7.31 -39.94 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.99 Total: 1.61 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.62 Total: -3.44 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.06 Total: -42.53 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.18 Total: -16.93 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.62 -7.31 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570722763.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.000 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds