Wall clock time and date at job start Tue Mar 31 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21283 * 119.99810 * 2 1 4 4 N 1.34778 * 120.00191 * 180.02562 * 2 1 3 5 5 C 1.46492 * 119.99903 * 179.97438 * 4 2 1 6 6 H 1.08998 * 109.47579 * 34.99558 * 5 4 2 7 7 C 1.52998 * 109.47182 * 274.99346 * 5 4 2 8 8 C 1.50703 * 109.46999 * 154.99736 * 5 4 2 9 9 O 1.21280 * 119.99891 * 22.92160 * 8 5 4 10 10 N 1.34774 * 119.99991 * 202.91877 * 8 5 4 11 11 C 1.46935 * 120.62766 * 174.83536 * 10 8 5 12 12 C 1.53194 * 108.77210 * 233.58955 * 11 10 8 13 13 C 1.53040 * 109.31491 * 305.36701 * 12 11 10 14 14 C 1.53002 * 109.45917 * 181.39191 * 13 12 11 15 15 C 1.50696 * 109.47336 * 64.93139 * 14 13 12 16 16 H 1.08004 * 120.00216 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99725 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99775 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00129 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46899 * 90.00606 * 19 17 15 21 21 H 1.48501 * 109.46984 * 210.00122 * 19 17 15 22 22 H 1.48493 * 109.47151 * 329.99987 * 19 17 15 23 23 C 1.53037 * 109.53615 * 61.36572 * 13 12 11 24 24 C 1.46917 * 120.63418 * 354.82172 * 10 8 5 25 25 H 1.09001 * 109.46893 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46889 * 299.99334 * 1 2 3 27 27 H 1.09002 * 109.47315 * 59.99210 * 1 2 3 28 28 H 0.97002 * 119.99526 * 359.97438 * 4 2 1 29 29 H 1.08997 * 109.47187 * 181.20440 * 7 5 4 30 30 H 1.09002 * 109.47373 * 301.20758 * 7 5 4 31 31 H 1.09000 * 109.46802 * 61.20483 * 7 5 4 32 32 H 1.08998 * 109.58417 * 353.37827 * 11 10 8 33 33 H 1.09003 * 109.58307 * 113.80581 * 11 10 8 34 34 H 1.08997 * 109.49979 * 65.32504 * 12 11 10 35 35 H 1.09005 * 109.49007 * 185.41521 * 12 11 10 36 36 H 1.08998 * 109.45907 * 301.34557 * 13 12 11 37 37 H 1.08991 * 109.47023 * 184.93273 * 14 13 12 38 38 H 1.09003 * 109.46610 * 304.92887 * 14 13 12 39 39 H 0.96998 * 120.00221 * 180.02562 * 18 17 15 40 40 H 1.09006 * 109.49417 * 178.67991 * 23 13 12 41 41 H 1.08997 * 109.52041 * 58.60457 * 23 13 12 42 42 H 1.09002 * 109.58974 * 246.20000 * 24 10 8 43 43 H 1.09007 * 109.58560 * 6.47717 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0095 -0.3254 0.5883 7 6 4.1553 -1.0412 -1.4383 8 6 4.1485 -2.4549 0.5990 9 8 3.4386 -3.4382 0.6062 10 7 5.3869 -2.5139 1.1275 11 6 5.8499 -3.7265 1.8162 12 6 6.3528 -3.3399 3.2106 13 6 7.4155 -2.2464 3.0803 14 6 7.9451 -1.8822 4.4688 15 6 8.6619 -3.0686 5.0602 16 1 8.7323 -3.9904 4.5018 17 6 9.2268 -2.9776 6.3146 18 7 9.8519 -4.0131 6.8309 19 14 9.1043 -1.3835 7.2807 20 1 7.8719 -1.4003 8.1091 21 1 10.2914 -1.2466 8.1623 22 1 9.0522 -0.2367 6.3389 23 6 6.7975 -1.0071 2.4290 24 6 6.2997 -1.3672 1.0258 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 1.6959 -2.0072 -0.0005 29 1 5.2451 -1.0627 -1.4406 30 1 3.7743 -1.8714 -2.0329 31 1 3.8095 -0.0998 -1.8651 32 1 5.0243 -4.4323 1.9081 33 1 6.6613 -4.1819 1.2484 34 1 5.5199 -2.9685 3.8077 35 1 6.7875 -4.2139 3.6957 36 1 8.2367 -2.6100 2.4626 37 1 8.6370 -1.0442 4.3855 38 1 7.1118 -1.6027 5.1135 39 1 10.2491 -3.9492 7.7136 40 1 7.5489 -0.2206 2.3579 41 1 5.9606 -0.6572 3.0333 42 1 7.1477 -1.6301 0.3935 43 1 5.7716 -0.5171 0.5937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570722765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:00 Heat of formation + Delta-G solvation = -90.028220 kcal Electronic energy + Delta-G solvation = -22798.426555 eV Core-core repulsion = 19456.855429 eV Total energy + Delta-G solvation = -3341.571126 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.73806 -39.44840 -37.59111 -35.20633 -34.22448 -32.32387 -31.80281 -30.72930 -29.20151 -28.54830 -25.36390 -24.13132 -22.85411 -21.57111 -20.75027 -19.90369 -18.98883 -17.73792 -16.92862 -16.70322 -16.24067 -15.73121 -15.27721 -15.05259 -14.42949 -14.10374 -14.01041 -13.72394 -13.46026 -13.30957 -13.07584 -13.02801 -12.74004 -12.46735 -12.43620 -12.27819 -12.11525 -11.85632 -11.49035 -11.22027 -10.93552 -10.66642 -10.42635 -10.18882 -9.98578 -9.86796 -9.71106 -9.53528 -9.39123 -9.08996 -8.55921 -8.54817 -6.06590 -4.04306 2.30133 2.45755 2.70841 3.20373 3.28873 3.36827 3.39657 4.21067 4.43117 4.55053 4.78800 4.80840 4.90395 4.96425 5.11242 5.17838 5.22466 5.27580 5.32450 5.44211 5.48184 5.50717 5.56451 5.68042 5.81886 5.84205 5.93686 6.08845 6.19061 6.20907 6.37165 6.47969 6.75622 6.81592 6.94918 7.22129 7.24317 7.33753 7.40025 7.77026 7.93666 8.01588 8.50823 8.97855 9.56335 11.06630 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025414 B = 0.003658 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.509892 B = 7653.055734 C = 8056.211903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.714 5.714 5 C 0.121 3.879 6 H 0.112 0.888 7 C -0.158 4.158 8 C 0.512 3.488 9 O -0.546 6.546 10 N -0.598 5.598 11 C 0.109 3.891 12 C -0.120 4.120 13 C -0.072 4.072 14 C -0.009 4.009 15 C -0.517 4.517 16 H 0.074 0.926 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.135 4.135 24 C 0.101 3.899 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.410 0.590 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.016 0.984 38 H 0.010 0.990 39 H 0.262 0.738 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.733 6.413 -16.098 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.369 5.369 5 C 0.013 3.987 6 H 0.130 0.870 7 C -0.216 4.216 8 C 0.299 3.701 9 O -0.425 6.425 10 N -0.330 5.330 11 C -0.012 4.012 12 C -0.158 4.158 13 C -0.091 4.091 14 C -0.046 4.046 15 C -0.555 4.555 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.173 4.173 24 C -0.022 4.022 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.248 0.752 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.034 0.966 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.562 6.571 -15.924 22.557 hybrid contribution -0.080 0.379 0.765 0.858 sum -14.642 6.950 -15.158 22.192 Atomic orbital electron populations 1.21834 0.91246 1.04448 1.05378 1.20858 0.90748 0.83169 0.75181 1.90729 1.70700 1.31340 1.49864 1.45976 1.05867 1.09760 1.75261 1.20830 0.82028 0.97254 0.98638 0.87050 1.22110 1.01928 1.03425 0.94164 1.20466 0.81746 0.89675 0.78209 1.90661 1.56265 1.37086 1.58457 1.48138 1.13365 1.16640 1.54887 1.21841 0.99721 0.85916 0.93742 1.21920 0.98606 1.01062 0.94163 1.21015 0.96434 0.92962 0.98692 1.19614 0.95728 0.97475 0.91819 1.21128 1.34108 0.98631 1.01616 0.90836 1.25030 0.94803 0.96115 0.97563 1.69912 1.37110 1.29989 1.17264 0.86806 0.77599 0.84828 0.80199 1.20401 1.21465 1.19068 1.22082 1.00906 0.99693 0.94585 1.21973 0.93356 0.87890 0.98969 0.90392 0.88548 0.88633 0.75241 0.90788 0.91613 0.90782 0.89496 0.91415 0.92421 0.89064 0.91585 0.96556 0.97135 0.92772 0.90774 0.91911 0.90785 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.39 36.01 0.37 -0.69 16 2 C 0.51 5.42 7.90 -10.98 -0.09 5.33 16 3 O -0.55 -7.92 16.76 5.56 0.09 -7.83 16 4 N -0.71 -7.36 5.05 -54.94 -0.28 -7.64 16 5 C 0.12 1.36 2.11 -69.09 -0.15 1.21 16 6 H 0.11 1.33 6.06 -51.93 -0.31 1.01 16 7 C -0.16 -1.46 9.23 37.16 0.34 -1.12 16 8 C 0.51 6.90 6.92 -10.98 -0.08 6.82 16 9 O -0.55 -8.68 15.40 5.56 0.09 -8.59 16 10 N -0.60 -8.01 2.97 -172.77 -0.51 -8.53 16 11 C 0.11 1.61 6.42 -3.70 -0.02 1.59 16 12 C -0.12 -2.07 5.19 -26.61 -0.14 -2.20 16 13 C -0.07 -1.30 2.10 -90.58 -0.19 -1.49 16 14 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 15 C -0.52 -14.04 8.94 -34.44 -0.31 -14.35 16 16 H 0.07 2.13 7.30 -52.48 -0.38 1.74 16 17 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 19 Si 0.88 21.45 27.47 -169.99 -4.67 16.79 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 23 C -0.13 -1.93 5.36 -26.62 -0.14 -2.07 16 24 C 0.10 1.18 5.71 -3.72 -0.02 1.15 16 25 H 0.08 0.34 7.91 -51.93 -0.41 -0.07 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.41 3.83 7.60 -40.82 -0.31 3.52 16 29 H 0.07 0.61 7.10 -51.93 -0.37 0.24 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.33 7.04 -51.93 -0.37 0.96 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.76 6.91 -51.93 -0.36 1.40 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 38 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.80 5.02 -51.93 -0.26 0.53 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -33.18 341.06 -6.91 -40.09 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.93 Total: 1.53 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.61 Total: -4.33 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -0.02 Total: -42.79 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.18 Total: -16.42 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.18 -6.91 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570722765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.937 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds