Wall clock time and date at job start Tue Mar 31 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.47149 * 2 1 4 4 C 1.42899 * 114.00000 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.56607 * 4.30893 * 4 3 2 6 6 C 1.53000 * 117.49706 * 218.61788 * 4 3 2 7 7 C 1.53001 * 117.49753 * 149.99656 * 4 3 2 8 8 H 1.09003 * 117.51612 * 214.96915 * 7 4 3 9 9 N 1.46497 * 117.50087 * 0.02562 * 7 4 3 10 10 C 1.34779 * 119.99868 * 205.01322 * 9 7 4 11 11 O 1.21588 * 119.99950 * 359.97438 * 10 9 7 12 12 N 1.34771 * 119.99941 * 179.97438 * 10 9 7 13 13 C 1.46500 * 120.00130 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.01770 * 326.38819 * 13 12 10 15 15 C 1.53870 * 110.03396 * 87.83441 * 13 12 10 16 16 C 1.54467 * 106.68538 * 119.44242 * 15 13 12 17 17 C 1.54886 * 104.10298 * 23.34389 * 16 15 13 18 18 H 1.09000 * 110.75738 * 80.70220 * 17 16 15 19 19 C 1.50701 * 110.76117 * 203.89213 * 17 16 15 20 20 H 1.08002 * 119.99761 * 116.05832 * 19 17 16 21 21 C 1.37871 * 119.99694 * 296.34395 * 19 17 16 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 17 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 17 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47301 * 119.99669 * 23 21 19 26 26 H 1.48498 * 109.47430 * 239.99516 * 23 21 19 27 27 C 1.54272 * 110.03194 * 205.00373 * 13 12 10 28 28 H 1.08993 * 109.47166 * 60.00300 * 1 2 3 29 29 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47226 * 299.99799 * 1 2 3 31 31 H 1.09003 * 109.47234 * 239.99416 * 2 1 3 32 32 H 1.09003 * 109.47333 * 119.99738 * 2 1 3 33 33 H 1.08999 * 117.49899 * 145.01950 * 6 4 3 34 34 H 1.09000 * 117.51799 * 359.97438 * 6 4 3 35 35 H 0.96998 * 120.00374 * 25.01285 * 9 7 4 36 36 H 0.97007 * 120.00200 * 0.02562 * 12 10 9 37 37 H 1.09003 * 110.03353 * 238.57184 * 15 13 12 38 38 H 1.09007 * 110.02978 * 0.02562 * 15 13 12 39 39 H 1.08998 * 110.40882 * 264.75861 * 16 15 13 40 40 H 1.09001 * 110.66186 * 142.05203 * 16 15 13 41 41 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 42 42 H 1.09001 * 110.48697 * 98.42805 * 27 13 12 43 43 H 1.09000 * 110.60131 * 335.83378 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9771 0.5198 -0.0748 6 6 4.0517 2.5728 0.8464 7 6 4.0420 2.6876 -0.6793 8 1 4.9904 2.5552 -1.2000 9 7 3.1220 3.6576 -1.2783 10 6 3.5400 4.4500 -2.2852 11 8 4.6808 4.3601 -2.6961 12 7 2.6935 5.3420 -2.8367 13 6 3.1477 6.2030 -3.9315 14 1 4.2010 6.4501 -3.7994 15 6 2.9366 5.4949 -5.2812 16 6 1.9734 6.3815 -6.1012 17 6 2.1426 7.7925 -5.4853 18 1 3.0334 8.2817 -5.8791 19 6 0.9183 8.6349 -5.7356 20 1 0.3184 8.9760 -4.9048 21 6 0.5609 8.9652 -7.0256 22 7 1.2914 8.5499 -8.0372 23 14 -0.9610 10.0029 -7.3364 24 1 -1.6040 10.3390 -6.0408 25 1 -0.5727 11.2539 -8.0361 26 1 -1.9164 9.2403 -8.1795 27 6 2.3035 7.4935 -3.9740 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.0063 2.3645 1.3294 34 1 3.3738 3.2192 1.4038 35 1 2.2119 3.7295 -0.9504 36 1 1.7834 5.4140 -2.5087 37 1 3.8876 5.3984 -5.8050 38 1 2.4957 4.5109 -5.1217 39 1 0.9464 6.0353 -5.9853 40 1 2.2583 6.3880 -7.1533 41 1 1.0397 8.7820 -8.9448 42 1 2.8287 8.3094 -3.4774 43 1 1.3299 7.3303 -3.5117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571873659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:12 Heat of formation + Delta-G solvation = -61.902008 kcal Electronic energy + Delta-G solvation = -22005.783101 eV Core-core repulsion = 18665.431619 eV Total energy + Delta-G solvation = -3340.351482 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.01080 -38.78857 -37.15694 -35.86288 -33.62406 -32.65904 -31.59891 -30.90434 -28.09314 -26.86649 -23.89746 -23.23266 -22.49718 -22.18613 -20.73821 -19.62901 -19.15773 -18.11295 -17.47567 -16.51164 -15.87235 -15.72181 -15.37574 -14.95591 -14.59993 -14.35542 -14.11546 -13.82080 -13.37025 -12.98487 -12.72011 -12.59581 -12.31698 -12.28381 -11.74035 -11.65867 -11.47379 -11.21809 -11.05291 -10.94195 -10.87971 -10.52140 -10.28385 -9.94766 -9.78775 -9.56619 -9.49442 -9.18947 -8.81533 -8.75378 -8.38191 -8.31853 -5.98667 -4.01783 2.76661 3.16215 3.30668 3.32555 3.39001 3.42240 3.81730 4.36864 4.46004 4.59732 4.65029 4.70642 4.76079 4.98717 5.04768 5.15422 5.33675 5.45199 5.49412 5.56551 5.58566 5.74510 5.74898 5.80348 5.90291 6.38420 6.42554 6.52214 6.63513 6.73177 6.79934 6.92060 6.95245 7.01502 7.15667 7.32559 7.42957 7.74535 7.91210 8.05465 8.28219 8.45752 8.86764 9.00762 9.62233 11.10749 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023234 B = 0.003084 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.838976 B = 9075.478874 C = 9733.862408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.356 6.356 4 C 0.006 3.994 5 H 0.115 0.885 6 C -0.204 4.204 7 C 0.112 3.888 8 H 0.142 0.858 9 N -0.716 5.716 10 C 0.704 3.296 11 O -0.596 6.596 12 N -0.732 5.732 13 C 0.156 3.844 14 H 0.080 0.920 15 C -0.135 4.135 16 C -0.101 4.101 17 C 0.051 3.949 18 H 0.034 0.966 19 C -0.513 4.513 20 H 0.055 0.945 21 C 0.062 3.938 22 N -0.888 5.888 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.121 4.121 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.401 0.599 36 H 0.393 0.607 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.259 0.741 42 H 0.053 0.947 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.389 -16.170 16.961 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.274 6.274 4 C -0.054 4.054 5 H 0.133 0.867 6 C -0.243 4.243 7 C 0.003 3.997 8 H 0.160 0.840 9 N -0.369 5.369 10 C 0.405 3.595 11 O -0.474 6.474 12 N -0.385 5.385 13 C 0.052 3.948 14 H 0.098 0.902 15 C -0.174 4.174 16 C -0.139 4.139 17 C 0.032 3.968 18 H 0.052 0.948 19 C -0.551 4.551 20 H 0.074 0.926 21 C -0.140 4.140 22 N -0.527 5.527 23 Si 0.717 3.283 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.159 4.159 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.236 0.764 36 H 0.227 0.773 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.319 -16.046 16.338 23.017 hybrid contribution -1.606 0.291 0.143 1.638 sum 0.713 -15.755 16.481 22.811 Atomic orbital electron populations 1.21759 0.93523 1.02411 1.03341 1.22536 0.95640 0.83309 1.00186 1.87792 1.18509 1.26914 1.94178 1.23349 0.82460 0.94726 1.04881 0.86736 1.24044 1.02850 1.02117 0.95282 1.21882 0.95435 0.90226 0.92127 0.84045 1.44301 1.15264 1.39625 1.37716 1.15978 0.84960 0.79256 0.79349 1.90885 1.18366 1.72526 1.65665 1.45526 1.14523 1.39647 1.38812 1.21744 0.99064 0.89465 0.84509 0.90169 1.22697 1.00382 0.98632 0.95705 1.22349 0.96329 0.95911 0.99324 1.19559 0.97149 0.92679 0.87400 0.94816 1.21137 1.09940 1.31933 0.92093 0.92628 1.24981 0.96688 0.95921 0.96371 1.69970 1.38412 1.45624 0.98657 0.86591 0.83314 0.80203 0.78188 1.19846 1.21100 1.21133 1.22763 0.97858 0.93720 1.01567 0.91587 0.90987 0.91828 0.93081 0.93252 0.87465 0.87914 0.76444 0.77281 0.92624 0.93234 0.93583 0.91407 0.93139 0.92847 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.44 6.53 37.16 0.24 0.69 16 3 O -0.36 -3.49 10.03 -35.23 -0.35 -3.85 16 4 C 0.01 0.05 6.44 -26.73 -0.17 -0.12 16 5 H 0.12 0.77 7.93 -51.93 -0.41 0.35 16 6 C -0.20 -1.74 10.40 -26.73 -0.28 -2.02 16 7 C 0.11 1.24 6.43 -67.93 -0.44 0.80 16 8 H 0.14 1.69 7.40 -51.93 -0.38 1.31 16 9 N -0.72 -9.15 5.47 -58.68 -0.32 -9.47 16 10 C 0.70 11.64 8.56 -86.92 -0.74 10.90 16 11 O -0.60 -12.05 15.56 5.29 0.08 -11.97 16 12 N -0.73 -11.69 4.99 -57.58 -0.29 -11.98 16 13 C 0.16 2.95 3.25 -66.81 -0.22 2.73 16 14 H 0.08 1.60 7.56 -51.93 -0.39 1.21 16 15 C -0.14 -2.73 6.60 -25.51 -0.17 -2.89 16 16 C -0.10 -2.35 5.67 -24.97 -0.14 -2.49 16 17 C 0.05 1.25 2.77 -89.78 -0.25 1.00 16 18 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.51 -13.84 8.52 -34.44 -0.29 -14.14 16 20 H 0.06 1.48 7.78 -52.49 -0.41 1.07 16 21 C 0.06 1.71 5.34 -17.82 -0.10 1.61 16 22 N -0.89 -25.46 12.19 55.43 0.68 -24.78 16 23 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 C -0.12 -2.43 5.94 -25.07 -0.15 -2.58 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.40 4.46 8.41 -40.82 -0.34 4.12 16 36 H 0.39 5.35 8.38 -40.82 -0.34 5.01 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 39 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 40 H 0.07 1.73 7.49 -51.93 -0.39 1.34 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 1.16 7.64 -51.93 -0.40 0.77 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -31.43 354.10 -9.47 -40.90 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.26 Total: 6.84 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.32 Total: -7.14 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.07 Total: -46.24 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.27 Total: -15.81 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.43 -9.47 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571873659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.003 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds