Wall clock time and date at job start Tue Mar 31 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47061 * 2 1 4 4 C 1.42904 * 113.99652 * 180.02562 * 3 2 1 5 5 H 1.08989 * 115.56458 * 4.30895 * 4 3 2 6 6 C 1.53079 * 117.48992 * 218.59673 * 4 3 2 7 7 C 1.52998 * 59.98322 * 252.51722 * 6 4 3 8 8 H 1.09003 * 117.50458 * 107.50094 * 7 6 4 9 9 N 1.46501 * 117.49798 * 252.49974 * 7 6 4 10 10 C 1.34775 * 120.00390 * 223.74544 * 9 7 6 11 11 O 1.21595 * 119.99829 * 0.02562 * 10 9 7 12 12 N 1.34772 * 120.00322 * 180.02562 * 10 9 7 13 13 C 1.46501 * 119.99892 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.01792 * 326.38623 * 13 12 10 15 15 C 1.53871 * 110.03656 * 87.83042 * 13 12 10 16 16 C 1.54269 * 106.59813 * 119.28218 * 15 13 12 17 17 C 1.54885 * 104.19677 * 23.61322 * 16 15 13 18 18 H 1.09002 * 110.75709 * 80.37016 * 17 16 15 19 19 C 1.50697 * 110.91369 * 203.67045 * 17 16 15 20 20 H 1.07991 * 120.00281 * 115.95471 * 19 17 16 21 21 C 1.37879 * 119.99754 * 295.94927 * 19 17 16 22 22 N 1.31512 * 120.00423 * 0.02562 * 21 19 17 23 23 Si 1.86806 * 119.99968 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46829 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47212 * 120.00085 * 23 21 19 26 26 H 1.48503 * 109.47191 * 240.00477 * 23 21 19 27 27 C 1.54271 * 110.03085 * 204.99742 * 13 12 10 28 28 H 1.09002 * 109.47420 * 300.00154 * 1 2 3 29 29 H 1.09004 * 109.47086 * 60.00246 * 1 2 3 30 30 H 1.08999 * 109.47416 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46959 * 239.99578 * 2 1 3 32 32 H 1.09004 * 109.47086 * 119.99754 * 2 1 3 33 33 H 1.08998 * 117.51113 * 145.03682 * 6 4 3 34 34 H 1.08996 * 117.51234 * 359.97438 * 6 4 3 35 35 H 0.97000 * 119.99892 * 43.75282 * 9 7 6 36 36 H 0.96996 * 120.00043 * 359.97438 * 12 10 9 37 37 H 1.09000 * 110.03307 * 238.56970 * 15 13 12 38 38 H 1.09002 * 110.03084 * 0.02562 * 15 13 12 39 39 H 1.09002 * 110.48538 * 264.93327 * 16 15 13 40 40 H 1.08996 * 110.48433 * 142.29362 * 16 15 13 41 41 H 0.96996 * 120.00433 * 179.97438 * 22 21 19 42 42 H 1.09002 * 110.48367 * 98.42685 * 27 13 12 43 43 H 1.09003 * 110.48661 * 335.78105 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9771 0.5198 -0.0748 6 6 4.0519 2.5737 0.8465 7 6 4.0420 2.6876 -0.6792 8 1 3.3575 3.4088 -1.1258 9 7 5.3166 2.5092 -1.3791 10 6 5.6578 3.3434 -2.3811 11 8 4.9080 4.2446 -2.7039 12 7 6.8301 3.1789 -3.0253 13 6 7.2012 4.0862 -4.1141 14 1 6.3106 4.3985 -4.6595 15 6 7.9328 5.3163 -3.5491 16 6 9.3395 5.3218 -4.1823 17 6 9.1705 4.5095 -5.4902 18 1 8.7370 5.1282 -6.2760 19 6 10.4873 3.9281 -5.9364 20 1 10.6212 2.8571 -5.9696 21 6 11.5211 4.7638 -6.3024 22 7 11.3583 6.0682 -6.2617 23 14 13.1532 4.0432 -6.8562 24 1 13.0794 2.5606 -6.8140 25 1 13.4438 4.4845 -8.2439 26 1 14.2336 4.5115 -5.9513 27 6 8.1889 3.3871 -5.0710 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0067 2.3660 1.3295 34 1 3.3739 3.2202 1.4035 35 1 5.9149 1.7905 -1.1215 36 1 7.4285 2.4604 -2.7676 37 1 7.3977 6.2263 -3.8204 38 1 8.0122 5.2381 -2.4648 39 1 10.0573 4.8357 -3.5215 40 1 9.6539 6.3415 -4.4045 41 1 12.0857 6.6560 -6.5188 42 1 7.6634 2.9950 -5.9418 43 1 8.7208 2.5886 -4.5537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571873660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:14 Heat of formation + Delta-G solvation = -61.634214 kcal Electronic energy + Delta-G solvation = -21699.666227 eV Core-core repulsion = 18359.326358 eV Total energy + Delta-G solvation = -3340.339870 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.05418 -38.80859 -37.24413 -35.96516 -33.68092 -32.73167 -31.69281 -30.80122 -28.13082 -26.89763 -23.92786 -23.24272 -22.52390 -22.23268 -20.89362 -19.68152 -19.19756 -18.24999 -17.27834 -16.64580 -16.03757 -15.86837 -15.34724 -14.94023 -14.60785 -14.51125 -14.05922 -13.94608 -13.16298 -13.07927 -12.71562 -12.62602 -12.36185 -12.32313 -11.77185 -11.71153 -11.43175 -11.23309 -11.09118 -10.97526 -10.90622 -10.54635 -10.31411 -10.00250 -9.84353 -9.64561 -9.52311 -9.21207 -8.89241 -8.79170 -8.44606 -8.35950 -6.00882 -4.04220 2.57274 3.19935 3.28875 3.35003 3.37322 3.40206 3.78703 4.36103 4.43920 4.46282 4.60490 4.66146 4.72651 4.94593 5.01140 5.16433 5.31345 5.41266 5.53135 5.53588 5.56914 5.70912 5.75666 5.76972 5.86475 6.34842 6.38419 6.43649 6.59439 6.69331 6.76379 6.88999 6.92103 6.96726 7.06215 7.29283 7.38550 7.71959 7.88630 8.02977 8.19100 8.43114 8.79507 8.98434 9.59924 11.08551 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040950 B = 0.002558 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.596768 B =10942.007327 C =11154.288172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.354 6.354 4 C 0.007 3.993 5 H 0.110 0.890 6 C -0.196 4.196 7 C 0.110 3.890 8 H 0.143 0.857 9 N -0.723 5.723 10 C 0.704 3.296 11 O -0.589 6.589 12 N -0.732 5.732 13 C 0.156 3.844 14 H 0.081 0.919 15 C -0.135 4.135 16 C -0.101 4.101 17 C 0.051 3.949 18 H 0.034 0.966 19 C -0.513 4.513 20 H 0.056 0.944 21 C 0.062 3.938 22 N -0.888 5.888 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.121 4.121 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.395 0.605 36 H 0.393 0.607 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.259 0.741 42 H 0.053 0.947 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.116 -11.983 14.057 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.272 6.272 4 C -0.053 4.053 5 H 0.127 0.873 6 C -0.235 4.235 7 C 0.002 3.998 8 H 0.161 0.839 9 N -0.377 5.377 10 C 0.405 3.595 11 O -0.467 6.467 12 N -0.385 5.385 13 C 0.052 3.948 14 H 0.099 0.901 15 C -0.174 4.174 16 C -0.140 4.140 17 C 0.032 3.968 18 H 0.052 0.948 19 C -0.552 4.552 20 H 0.074 0.926 21 C -0.140 4.140 22 N -0.526 5.526 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.159 4.159 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.229 0.771 36 H 0.227 0.773 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.837 -10.795 13.661 23.537 hybrid contribution 1.717 -1.258 0.114 2.132 sum -14.120 -12.054 13.775 23.117 Atomic orbital electron populations 1.21758 0.93540 1.02372 1.03319 1.22553 0.95677 0.83438 1.00229 1.87867 1.18439 1.26757 1.94113 1.23303 0.82397 0.94673 1.04919 0.87263 1.24125 1.02429 1.01861 0.95130 1.21842 0.87102 1.00052 0.90784 0.83937 1.44514 1.20884 1.34931 1.37380 1.15968 0.82363 0.81940 0.79269 1.90910 1.52620 1.34641 1.68537 1.45544 1.19294 1.35648 1.38023 1.21769 0.97872 0.89357 0.85841 0.90125 1.22664 0.98734 0.96864 0.99151 1.22317 0.92005 1.01940 0.97698 1.19557 0.92931 0.91030 0.93236 0.94793 1.21125 0.96940 0.92741 1.44348 0.92621 1.24989 0.98653 0.94860 0.95478 1.69967 1.32291 1.02178 1.48185 0.86588 0.84106 0.79266 0.78315 1.19857 1.21085 1.21122 1.22770 0.96522 0.99897 0.96736 0.91795 0.91650 0.90966 0.93094 0.93191 0.87824 0.87324 0.77126 0.77330 0.92535 0.93224 0.93565 0.91432 0.93102 0.92811 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.43 6.53 37.16 0.24 0.67 16 3 O -0.35 -3.64 10.60 -35.23 -0.37 -4.02 16 4 C 0.01 0.06 6.37 -26.69 -0.17 -0.11 16 5 H 0.11 0.76 7.93 -51.94 -0.41 0.35 16 6 C -0.20 -1.72 10.41 -26.69 -0.28 -2.00 16 7 C 0.11 1.24 6.38 -67.93 -0.43 0.81 16 8 H 0.14 1.97 7.40 -51.93 -0.38 1.59 16 9 N -0.72 -8.34 5.57 -58.67 -0.33 -8.67 16 10 C 0.70 11.20 8.56 -86.92 -0.74 10.46 16 11 O -0.59 -11.89 15.56 5.28 0.08 -11.81 16 12 N -0.73 -11.11 4.99 -57.58 -0.29 -11.40 16 13 C 0.16 2.86 3.25 -66.81 -0.22 2.65 16 14 H 0.08 1.59 7.56 -51.93 -0.39 1.19 16 15 C -0.14 -2.67 6.59 -25.61 -0.17 -2.84 16 16 C -0.10 -2.33 5.67 -25.07 -0.14 -2.47 16 17 C 0.05 1.24 2.76 -89.78 -0.25 0.99 16 18 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.51 -13.71 8.53 -34.44 -0.29 -14.00 16 20 H 0.06 1.46 7.78 -52.49 -0.41 1.05 16 21 C 0.06 1.69 5.35 -17.82 -0.10 1.60 16 22 N -0.89 -25.30 12.22 55.43 0.68 -24.63 16 23 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C -0.12 -2.38 5.94 -25.07 -0.15 -2.53 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.40 3.27 8.84 -40.82 -0.36 2.91 16 36 H 0.39 4.88 8.37 -40.82 -0.34 4.54 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 39 H 0.05 1.08 8.05 -51.93 -0.42 0.66 16 40 H 0.07 1.71 7.51 -51.93 -0.39 1.32 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.13 7.64 -51.93 -0.40 0.73 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -31.70 355.13 -9.49 -41.19 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.28 Total: 5.39 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -2.31 Total: -7.35 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.06 Total: -44.69 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.29 Total: -15.83 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.70 -9.49 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571873660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.448 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds