Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46962 * 2 1 4 4 C 1.42902 * 113.99989 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.55052 * 355.72828 * 4 3 2 6 6 C 1.53000 * 117.49483 * 141.39412 * 4 3 2 7 7 C 1.53002 * 60.02940 * 107.48019 * 6 4 3 8 8 H 1.09000 * 117.49996 * 107.50493 * 7 6 4 9 9 N 1.46501 * 117.49747 * 252.51859 * 7 6 4 10 10 C 1.34778 * 120.00167 * 223.61209 * 9 7 6 11 11 O 1.21581 * 119.99875 * 359.97438 * 10 9 7 12 12 N 1.34776 * 119.99851 * 180.02562 * 10 9 7 13 13 C 1.46505 * 119.99844 * 180.02562 * 12 10 9 14 14 H 1.09004 * 110.01361 * 326.38283 * 13 12 10 15 15 C 1.54262 * 110.03403 * 87.83365 * 13 12 10 16 16 C 1.54883 * 104.19891 * 95.67423 * 15 13 12 17 17 C 1.54898 * 102.74684 * 37.94184 * 16 15 13 18 18 H 1.08996 * 110.48685 * 80.73854 * 17 16 15 19 19 C 1.50694 * 110.48448 * 203.37931 * 17 16 15 20 20 H 1.08000 * 120.00098 * 114.77553 * 19 17 16 21 21 C 1.37882 * 120.00300 * 294.77539 * 19 17 16 22 22 N 1.31515 * 119.99981 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 120.00239 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47245 * 59.99896 * 23 21 19 25 25 H 1.48497 * 109.47309 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47031 * 299.99836 * 23 21 19 27 27 C 1.53872 * 110.03057 * 205.00258 * 13 12 10 28 28 H 1.09001 * 109.46565 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47027 * 299.99093 * 1 2 3 30 30 H 1.08996 * 109.47040 * 59.99994 * 1 2 3 31 31 H 1.08995 * 109.47222 * 240.00414 * 2 1 3 32 32 H 1.08997 * 109.47525 * 120.00220 * 2 1 3 33 33 H 1.09002 * 117.49833 * 214.98124 * 6 4 3 34 34 H 1.09002 * 117.49953 * 359.97438 * 6 4 3 35 35 H 0.97008 * 120.00262 * 43.60731 * 9 7 6 36 36 H 0.97002 * 120.00614 * 359.97438 * 12 10 9 37 37 H 1.09006 * 110.48442 * 214.35495 * 15 13 12 38 38 H 1.09004 * 110.48357 * 336.99176 * 15 13 12 39 39 H 1.09004 * 110.75782 * 279.62978 * 16 15 13 40 40 H 1.09000 * 110.75773 * 156.25453 * 16 15 13 41 41 H 0.96993 * 120.00157 * 180.02562 * 22 21 19 42 42 H 1.09002 * 110.03278 * 359.97438 * 27 13 12 43 43 H 1.08995 * 110.03707 * 121.38396 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9770 0.5197 0.0742 6 6 4.0516 2.5731 -0.8462 7 6 4.0421 2.6884 0.6795 8 1 4.9906 2.5561 1.2001 9 7 3.1219 3.6580 1.2789 10 6 3.5401 4.4508 2.2854 11 8 4.6808 4.3610 2.6962 12 7 2.6933 5.3425 2.8371 13 6 3.1480 6.2047 3.9308 14 1 3.8697 5.6722 4.5503 15 6 3.7845 7.4893 3.3614 16 6 2.6338 8.5257 3.3838 17 6 1.8970 8.1898 4.7043 18 1 2.4157 8.6335 5.5541 19 6 0.4692 8.6682 4.6479 20 1 -0.3408 7.9541 4.6666 21 6 0.1966 10.0177 4.5723 22 7 1.1829 10.8874 4.5489 23 14 -1.5734 10.6108 4.5031 24 1 -2.2921 10.1675 5.7247 25 1 -1.5960 12.0936 4.4255 26 1 -2.2392 10.0427 3.3035 27 6 1.9478 6.6501 4.7846 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.0063 2.3650 -1.3293 34 1 3.3734 3.2189 -1.4040 35 1 2.2116 3.7295 0.9513 36 1 1.7830 5.4139 2.5096 37 1 4.6081 7.8198 3.9943 38 1 4.1293 7.3240 2.3406 39 1 1.9736 8.3886 2.5274 40 1 3.0290 9.5413 3.4096 41 1 0.9912 11.8368 4.4962 42 1 1.0271 6.2250 4.3850 43 1 2.0872 6.3339 5.8184 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571873661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = -61.675292 kcal Electronic energy + Delta-G solvation = -22122.147187 eV Core-core repulsion = 18781.805537 eV Total energy + Delta-G solvation = -3340.341651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.98632 -38.77433 -37.17633 -35.83360 -33.53388 -32.63520 -31.54828 -30.87537 -28.10258 -26.92373 -23.86927 -23.21765 -22.49480 -22.20094 -20.73396 -19.39159 -19.27383 -18.06783 -17.44346 -16.50145 -15.86478 -15.74432 -15.32866 -14.92712 -14.56719 -14.46374 -13.97211 -13.75934 -13.35423 -12.97124 -12.74248 -12.69529 -12.32594 -12.28103 -11.68604 -11.60605 -11.42206 -11.18931 -10.98618 -10.91228 -10.77911 -10.55527 -10.37983 -9.91926 -9.79472 -9.54423 -9.52834 -9.17780 -8.81484 -8.75626 -8.37208 -8.27684 -5.99023 -4.02095 2.80247 3.19750 3.32152 3.34837 3.37505 3.39316 3.84803 4.40705 4.45582 4.62503 4.67806 4.72168 4.78283 5.00104 5.06285 5.17609 5.32798 5.47168 5.52924 5.57876 5.61733 5.74081 5.77613 5.82359 5.90149 6.39364 6.41424 6.55750 6.65500 6.71193 6.81245 6.94445 6.98324 7.01670 7.21150 7.32636 7.44647 7.73252 7.89176 8.05059 8.33073 8.45814 8.90423 9.00352 9.61668 11.10406 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019345 B = 0.003401 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.073555 B = 8232.054801 C = 9174.820351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.005 3.995 5 H 0.115 0.885 6 C -0.204 4.204 7 C 0.112 3.888 8 H 0.142 0.858 9 N -0.715 5.715 10 C 0.705 3.295 11 O -0.599 6.599 12 N -0.728 5.728 13 C 0.158 3.842 14 H 0.076 0.924 15 C -0.137 4.137 16 C -0.099 4.099 17 C 0.048 3.952 18 H 0.033 0.967 19 C -0.515 4.515 20 H 0.054 0.946 21 C 0.063 3.937 22 N -0.889 5.889 23 Si 0.889 3.111 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.123 4.123 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.402 0.598 36 H 0.396 0.604 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 -19.814 -10.252 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.273 6.273 4 C -0.055 4.055 5 H 0.132 0.868 6 C -0.243 4.243 7 C 0.004 3.996 8 H 0.159 0.841 9 N -0.369 5.369 10 C 0.405 3.595 11 O -0.477 6.477 12 N -0.382 5.382 13 C 0.054 3.946 14 H 0.094 0.906 15 C -0.176 4.176 16 C -0.137 4.137 17 C 0.030 3.970 18 H 0.051 0.949 19 C -0.553 4.553 20 H 0.072 0.928 21 C -0.139 4.139 22 N -0.527 5.527 23 Si 0.717 3.283 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.204 1.204 27 C -0.161 4.161 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.236 0.764 36 H 0.230 0.770 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.225 -19.502 -9.818 22.070 hybrid contribution -1.716 0.257 -0.558 1.823 sum 1.509 -19.245 -10.376 21.916 Atomic orbital electron populations 1.21760 0.93535 1.02369 1.03377 1.22530 0.95636 0.83351 1.00141 1.87803 1.18522 1.26845 1.94177 1.23365 0.82438 0.94682 1.04979 0.86773 1.24045 1.02851 1.02076 0.95312 1.21882 0.95379 0.90177 0.92179 0.84080 1.44302 1.15287 1.39665 1.37635 1.15963 0.84918 0.79085 0.79513 1.90871 1.18234 1.73126 1.65518 1.45474 1.14639 1.39133 1.38915 1.21651 0.96954 0.89732 0.86290 0.90618 1.22860 0.99095 0.96110 0.99485 1.22454 0.94395 0.97328 0.99566 1.19461 0.95784 0.87775 0.94019 0.94903 1.21138 0.91671 0.91652 1.50820 0.92792 1.24984 0.96765 0.97010 0.95168 1.69949 1.30803 1.01703 1.50220 0.86715 0.85510 0.77545 0.78523 1.20348 1.21388 1.20378 1.22618 0.95466 1.00557 0.97439 0.91019 0.91603 0.91789 0.93265 0.93136 0.87477 0.87865 0.76375 0.77016 0.92081 0.93173 0.93571 0.91564 0.93034 0.92059 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.45 6.53 37.16 0.24 0.69 16 3 O -0.36 -3.57 10.03 -35.23 -0.35 -3.92 16 4 C 0.01 0.05 6.45 -26.70 -0.17 -0.12 16 5 H 0.11 0.77 7.93 -51.93 -0.41 0.36 16 6 C -0.20 -1.84 10.40 -26.73 -0.28 -2.11 16 7 C 0.11 1.27 6.44 -67.89 -0.44 0.84 16 8 H 0.14 1.71 7.40 -51.93 -0.38 1.32 16 9 N -0.72 -9.46 5.47 -58.64 -0.32 -9.79 16 10 C 0.70 11.87 8.56 -86.92 -0.74 11.12 16 11 O -0.60 -12.12 15.56 5.29 0.08 -12.03 16 12 N -0.73 -12.03 5.03 -57.58 -0.29 -12.32 16 13 C 0.16 2.97 3.25 -66.81 -0.22 2.75 16 14 H 0.08 1.47 7.56 -51.93 -0.39 1.07 16 15 C -0.14 -2.74 6.54 -25.08 -0.16 -2.90 16 16 C -0.10 -2.30 5.75 -24.74 -0.14 -2.44 16 17 C 0.05 1.17 2.72 -90.11 -0.25 0.93 16 18 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 19 C -0.51 -13.79 8.46 -34.44 -0.29 -14.08 16 20 H 0.05 1.41 7.54 -52.49 -0.40 1.02 16 21 C 0.06 1.71 5.35 -17.82 -0.10 1.62 16 22 N -0.89 -25.39 12.29 55.43 0.68 -24.71 16 23 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C -0.12 -2.46 6.13 -25.61 -0.16 -2.62 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 4.73 8.41 -40.82 -0.34 4.39 16 36 H 0.40 5.85 8.34 -40.82 -0.34 5.51 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.99 8.04 -51.93 -0.42 0.58 16 39 H 0.05 1.09 8.05 -51.93 -0.42 0.67 16 40 H 0.07 1.68 7.55 -51.93 -0.39 1.29 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.06 1.20 7.13 -51.93 -0.37 0.83 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -31.14 353.78 -9.44 -40.57 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.23 Total: 7.81 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.32 Total: -6.98 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.07 Total: -46.82 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.27 Total: -15.96 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.14 -9.44 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571873661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.101 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds