Wall clock time and date at job start Tue Mar 31 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42903 * 109.47410 * 2 1 4 4 C 1.42892 * 114.00132 * 179.97438 * 3 2 1 5 5 H 1.09005 * 115.55366 * 355.58701 * 4 3 2 6 6 C 1.53002 * 117.49745 * 141.25101 * 4 3 2 7 7 C 1.52998 * 117.50144 * 209.91047 * 4 3 2 8 8 H 1.09000 * 117.50367 * 145.02171 * 7 4 3 9 9 N 1.46507 * 117.49830 * 0.02562 * 7 4 3 10 10 C 1.34766 * 120.00322 * 154.99586 * 9 7 4 11 11 O 1.21593 * 119.99975 * 355.01975 * 10 9 7 12 12 N 1.34776 * 120.00156 * 175.01379 * 10 9 7 13 13 C 1.46921 * 120.63176 * 4.94322 * 12 10 9 14 14 C 1.53621 * 108.54467 * 126.36718 * 13 12 10 15 15 C 1.53046 * 109.24098 * 54.85804 * 14 13 12 16 16 C 1.50703 * 109.45894 * 178.49096 * 15 14 13 17 17 H 1.07998 * 119.99730 * 120.07063 * 16 15 14 18 18 C 1.37878 * 119.99882 * 300.06795 * 16 15 14 19 19 N 1.31510 * 120.00141 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99811 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47107 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46924 * 119.99999 * 20 18 16 23 23 H 1.48500 * 109.47372 * 240.00223 * 20 18 16 24 24 C 1.53035 * 109.53819 * 298.51400 * 15 14 13 25 25 C 1.46931 * 120.63207 * 185.22353 * 12 10 9 26 26 H 1.09006 * 109.47406 * 299.99734 * 1 2 3 27 27 H 1.09003 * 109.47434 * 59.99861 * 1 2 3 28 28 H 1.08998 * 109.47360 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47020 * 239.99457 * 2 1 3 30 30 H 1.09003 * 109.47434 * 120.00139 * 2 1 3 31 31 H 1.09000 * 117.49742 * 214.98187 * 6 4 3 32 32 H 1.08995 * 117.49977 * 359.97438 * 6 4 3 33 33 H 0.97003 * 119.99340 * 335.00191 * 9 7 4 34 34 H 1.08996 * 109.58886 * 246.20633 * 13 12 10 35 35 H 1.09006 * 109.58612 * 6.62912 * 13 12 10 36 36 H 1.09003 * 109.63590 * 294.87154 * 14 13 12 37 37 H 1.09004 * 109.46180 * 174.74443 * 14 13 12 38 38 H 1.09004 * 109.44383 * 58.52424 * 15 14 13 39 39 H 0.97004 * 119.99923 * 179.97438 * 19 18 16 40 40 H 1.09007 * 109.49685 * 301.41408 * 24 15 14 41 41 H 1.09000 * 109.52240 * 181.33437 * 24 15 14 42 42 H 1.09001 * 109.58378 * 353.37718 * 25 12 10 43 43 H 1.09004 * 109.58310 * 113.65231 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9769 0.5197 0.0766 6 6 4.0518 2.5709 -0.8488 7 6 4.0420 2.6886 0.6774 8 1 4.9902 2.5567 1.1984 9 7 3.1219 3.6591 1.2758 10 6 3.5402 4.4530 2.2812 11 8 4.6509 4.3028 2.7527 12 7 2.7275 5.4136 2.7640 13 6 1.3458 5.5382 2.2803 14 6 0.4008 5.5218 3.4913 15 6 0.8228 6.6154 4.4752 16 6 -0.1237 6.6281 5.6479 17 1 0.2510 6.4557 6.6460 18 6 -1.4678 6.8599 5.4465 19 7 -1.9241 7.0694 4.2310 20 14 -2.6408 6.8763 6.9002 21 1 -1.8830 6.6166 8.1507 22 1 -3.3008 8.2036 6.9886 23 1 -3.6708 5.8224 6.7172 24 6 2.2441 6.3381 4.9700 25 6 3.2083 6.3602 3.7798 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 5.0066 2.3614 -1.3311 32 1 3.3739 3.2153 -1.4083 33 1 2.2116 3.7301 0.9483 34 1 1.2320 6.4762 1.7371 35 1 1.1125 4.7015 1.6216 36 1 0.4524 4.5504 3.9831 37 1 -0.6203 5.7068 3.1577 38 1 0.7947 7.5837 3.9753 39 1 -2.8698 7.2321 4.0894 40 1 2.2784 5.3589 5.4478 41 1 2.5356 7.1040 5.6886 42 1 4.2043 6.0661 4.1109 43 1 3.2456 7.3636 3.3556 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573527807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:01 Heat of formation + Delta-G solvation = -48.387189 kcal Electronic energy + Delta-G solvation = -22798.462691 eV Core-core repulsion = 19458.697256 eV Total energy + Delta-G solvation = -3339.765436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.03290 -38.69066 -36.88644 -35.72134 -33.55527 -32.57332 -31.02285 -30.57443 -29.87488 -26.12425 -23.31027 -23.07267 -22.45554 -22.24680 -21.53407 -20.13133 -18.93532 -17.67727 -17.26693 -16.26183 -15.73210 -15.66758 -15.23239 -14.86991 -14.53893 -14.24178 -13.55777 -13.33469 -13.08083 -12.88639 -12.74994 -12.66402 -12.45415 -12.36384 -12.18699 -11.51772 -11.45705 -11.30003 -11.23103 -11.02757 -10.94659 -10.58593 -10.34551 -10.13644 -9.73071 -9.53270 -9.41693 -9.12360 -8.90506 -8.57462 -8.35799 -7.83336 -6.01465 -4.07304 2.91828 3.28225 3.30561 3.36709 3.41057 3.44758 3.94461 4.23176 4.42510 4.71168 4.74067 4.84498 4.90310 5.13941 5.18104 5.27840 5.29076 5.54407 5.60712 5.63855 5.73201 5.77079 5.89856 5.98070 6.00235 6.12758 6.21699 6.31287 6.51055 6.70445 6.72098 6.91356 7.03722 7.08306 7.19449 7.26923 7.51341 7.69839 7.95236 8.06007 8.35918 8.43022 8.96392 8.98253 9.57743 11.04008 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.004384 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.981033 B = 6385.589181 C = 7637.297306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.006 3.994 5 H 0.114 0.886 6 C -0.205 4.205 7 C 0.111 3.889 8 H 0.141 0.859 9 N -0.714 5.714 10 C 0.709 3.291 11 O -0.607 6.607 12 N -0.617 5.617 13 C 0.109 3.891 14 C -0.122 4.122 15 C 0.048 3.952 16 C -0.510 4.510 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.124 4.124 25 C 0.130 3.870 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.404 0.596 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.103 0.897 38 H 0.027 0.973 39 H 0.259 0.741 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.250 -11.218 -11.208 17.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 O -0.272 6.272 4 C -0.054 4.054 5 H 0.132 0.868 6 C -0.244 4.244 7 C 0.002 3.998 8 H 0.158 0.842 9 N -0.370 5.370 10 C 0.411 3.589 11 O -0.487 6.487 12 N -0.353 5.353 13 C -0.013 4.013 14 C -0.161 4.161 15 C 0.030 3.970 16 C -0.548 4.548 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.162 4.162 25 C 0.007 3.993 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.242 0.758 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.121 0.879 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.731 -11.080 -10.927 17.377 hybrid contribution -1.178 -0.232 0.442 1.279 sum 6.554 -11.312 -10.485 16.759 Atomic orbital electron populations 1.21765 0.93469 1.02335 1.03551 1.22528 0.95714 0.83303 1.00029 1.87819 1.18395 1.26877 1.94143 1.23326 0.82571 0.94658 1.04864 0.86816 1.24052 1.02771 1.02271 0.95279 1.21878 0.95475 0.90419 0.92003 0.84167 1.44470 1.15426 1.39357 1.37728 1.15788 0.84091 0.79350 0.79677 1.90831 1.21044 1.73813 1.63005 1.47403 1.12822 1.32094 1.42962 1.21999 0.80938 1.00102 0.98308 1.22083 1.00251 0.99466 0.94255 1.18635 0.89572 0.94389 0.94410 1.21263 0.92319 1.47879 0.93366 0.92642 1.24957 0.98286 0.95124 0.95614 1.69848 1.14225 1.49202 1.19865 0.86570 0.81017 0.77543 0.83071 1.19831 1.21066 1.21101 1.22017 0.97474 1.00990 0.95727 1.21578 0.98511 0.90711 0.88507 0.91408 0.91794 0.91058 0.93353 0.93150 0.87541 0.87936 0.75819 0.91997 0.92396 0.94266 0.87864 0.95450 0.93078 0.92962 0.92157 0.90271 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.15 0.38 -0.97 16 2 C 0.06 0.56 6.53 37.15 0.24 0.81 16 3 O -0.35 -4.24 10.03 -35.23 -0.35 -4.59 16 4 C 0.01 0.06 6.44 -26.73 -0.17 -0.11 16 5 H 0.11 0.92 7.93 -51.93 -0.41 0.51 16 6 C -0.20 -2.05 10.41 -26.69 -0.28 -2.33 16 7 C 0.11 1.42 6.45 -67.89 -0.44 0.99 16 8 H 0.14 1.87 7.39 -51.93 -0.38 1.49 16 9 N -0.71 -11.13 5.38 -58.64 -0.32 -11.44 16 10 C 0.71 13.44 8.30 -86.93 -0.72 12.72 16 11 O -0.61 -13.02 15.33 5.28 0.08 -12.94 16 12 N -0.62 -11.72 2.97 -178.24 -0.53 -12.25 16 13 C 0.11 2.03 6.42 -3.49 -0.02 2.00 16 14 C -0.12 -2.75 5.17 -26.38 -0.14 -2.88 16 15 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 16 C -0.51 -13.73 8.56 -34.44 -0.29 -14.02 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 19 N -0.89 -24.58 11.30 55.43 0.63 -23.95 16 20 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.12 -2.60 5.30 -26.62 -0.14 -2.75 16 25 C 0.13 2.47 6.44 -3.71 -0.02 2.45 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.40 6.03 5.88 -40.82 -0.24 5.79 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.95 5.64 -51.93 -0.29 0.66 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 2.57 6.03 -51.93 -0.31 2.25 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.08 1.51 7.00 -51.93 -0.36 1.14 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -30.41 345.27 -9.24 -39.64 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.04 Total: 5.95 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.89 Total: -1.57 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.22 Total: -47.65 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.27 Total: -17.53 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.41 -9.24 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573527807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.746 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds