Wall clock time and date at job start Tue Mar 31 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.47325 * 2 1 4 4 C 1.42898 * 113.99983 * 180.02562 * 3 2 1 5 5 H 1.09002 * 115.56355 * 4.30171 * 4 3 2 6 6 C 1.53002 * 117.49277 * 218.62563 * 4 3 2 7 7 C 1.52998 * 117.49892 * 150.00020 * 4 3 2 8 8 H 1.08997 * 117.51697 * 214.96067 * 7 4 3 9 9 N 1.46496 * 117.49823 * 359.97438 * 7 4 3 10 10 C 1.34771 * 120.00025 * 205.01238 * 9 7 4 11 11 O 1.21593 * 119.99989 * 5.07380 * 10 9 7 12 12 N 1.34782 * 120.00512 * 185.07036 * 10 9 7 13 13 C 1.46998 * 120.61142 * 354.99365 * 12 10 9 14 14 C 1.53184 * 108.73938 * 126.38447 * 13 12 10 15 15 C 1.53044 * 109.34143 * 54.62072 * 14 13 12 16 16 C 1.50702 * 109.46033 * 178.59506 * 15 14 13 17 17 H 1.07997 * 119.99824 * 0.02562 * 16 15 14 18 18 C 1.37870 * 119.99740 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00224 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99934 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47675 * 89.99869 * 20 18 16 22 22 H 1.48503 * 109.46822 * 210.00229 * 20 18 16 23 23 H 1.48503 * 109.46866 * 329.99450 * 20 18 16 24 24 C 1.53035 * 109.53396 * 298.61792 * 15 14 13 25 25 C 1.46924 * 120.63293 * 174.96576 * 12 10 9 26 26 H 1.09002 * 109.47291 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47119 * 300.00256 * 1 2 3 28 28 H 1.09001 * 109.47496 * 59.99974 * 1 2 3 29 29 H 1.08998 * 109.47190 * 240.00281 * 2 1 3 30 30 H 1.09001 * 109.47496 * 120.00026 * 2 1 3 31 31 H 1.08996 * 117.50137 * 145.02218 * 6 4 3 32 32 H 1.08999 * 117.52437 * 359.97438 * 6 4 3 33 33 H 0.97001 * 120.00186 * 25.00927 * 9 7 4 34 34 H 1.09009 * 109.62801 * 6.59193 * 13 12 10 35 35 H 1.09004 * 109.57552 * 246.14715 * 13 12 10 36 36 H 1.09000 * 109.49710 * 294.65065 * 14 13 12 37 37 H 1.09007 * 109.49705 * 174.58848 * 14 13 12 38 38 H 1.09003 * 109.45735 * 58.62813 * 15 14 13 39 39 H 0.97001 * 120.00141 * 179.97438 * 19 18 16 40 40 H 1.09005 * 109.49321 * 181.31527 * 24 15 14 41 41 H 1.08996 * 109.50437 * 301.37779 * 24 15 14 42 42 H 1.08993 * 109.58517 * 113.84311 * 25 12 10 43 43 H 1.09001 * 109.58683 * 353.41669 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9771 0.5197 -0.0747 6 6 4.0517 2.5727 0.8465 7 6 4.0421 2.6876 -0.6792 8 1 4.9905 2.5552 -1.1998 9 7 3.1221 3.6570 -1.2792 10 6 3.5405 4.4493 -2.2859 11 8 4.6506 4.2971 -2.7582 12 7 2.7285 5.4104 -2.7694 13 6 1.3463 5.5359 -2.2851 14 6 1.1203 6.9744 -1.8093 15 6 1.4822 7.9439 -2.9368 16 6 1.2281 9.3585 -2.4835 17 1 0.8471 9.5471 -1.4907 18 6 1.4830 10.4118 -3.3358 19 7 1.9483 10.1821 -4.5442 20 14 1.1687 12.1653 -2.7736 21 1 2.3951 12.7082 -2.1363 22 1 0.8070 13.0033 -3.9451 23 1 0.0538 12.1783 -1.7927 24 6 2.9608 7.7815 -3.2964 25 6 3.2083 6.3524 -3.7896 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.0063 2.3645 1.3295 32 1 3.3738 3.2191 1.4041 33 1 2.2118 3.7287 -0.9519 34 1 1.1849 4.8471 -1.4558 35 1 0.6534 5.3055 -3.0944 36 1 1.7496 7.1738 -0.9420 37 1 0.0731 7.1073 -1.5373 38 1 0.8698 7.7277 -3.8122 39 1 2.1273 10.9231 -5.1440 40 1 3.2236 8.4886 -4.0833 41 1 3.5729 7.9740 -2.4153 42 1 2.6673 6.1886 -4.7215 43 1 4.2755 6.2020 -3.9529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573527809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:03 Heat of formation + Delta-G solvation = -47.681999 kcal Electronic energy + Delta-G solvation = -22668.736097 eV Core-core repulsion = 19329.001241 eV Total energy + Delta-G solvation = -3339.734856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.04917 -38.73143 -36.91302 -35.76548 -33.59697 -32.47491 -31.05106 -30.80765 -29.79906 -26.12894 -23.28190 -23.16259 -22.54493 -22.27202 -21.49718 -20.15487 -18.90984 -17.72632 -17.31330 -16.30082 -15.81034 -15.69246 -15.16659 -14.89498 -14.53177 -14.29485 -13.68358 -13.29253 -13.08795 -12.96713 -12.78359 -12.70558 -12.52728 -12.28681 -12.21486 -11.74174 -11.51968 -11.30373 -11.09158 -11.08067 -10.91184 -10.63812 -10.39153 -10.03528 -9.75615 -9.52909 -9.46855 -9.15756 -8.88993 -8.58669 -8.33856 -7.83451 -5.99319 -4.06067 2.89022 3.27968 3.30539 3.37550 3.40044 3.42278 3.92696 4.19552 4.43296 4.67181 4.70824 4.76568 4.82949 5.04592 5.11874 5.23516 5.30289 5.43070 5.52506 5.59815 5.62056 5.77313 5.81201 5.85335 5.93467 6.11355 6.32101 6.46240 6.52696 6.64997 6.69011 6.86237 7.01035 7.02136 7.20174 7.28203 7.54251 7.73860 7.96350 8.09190 8.35631 8.43214 8.97187 8.98281 9.58880 11.06004 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025979 B = 0.003557 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.540475 B = 7870.124399 C = 8303.393060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.005 3.995 5 H 0.114 0.886 6 C -0.204 4.204 7 C 0.112 3.888 8 H 0.141 0.859 9 N -0.715 5.715 10 C 0.708 3.292 11 O -0.603 6.603 12 N -0.617 5.617 13 C 0.113 3.887 14 C -0.124 4.124 15 C 0.050 3.950 16 C -0.513 4.513 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.123 4.123 25 C 0.127 3.873 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.402 0.598 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.260 0.740 40 H 0.104 0.896 41 H 0.037 0.963 42 H 0.056 0.944 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.461 -19.016 8.607 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.274 6.274 4 C -0.055 4.055 5 H 0.132 0.868 6 C -0.243 4.243 7 C 0.003 3.997 8 H 0.159 0.841 9 N -0.371 5.371 10 C 0.410 3.590 11 O -0.483 6.483 12 N -0.353 5.353 13 C -0.011 4.011 14 C -0.162 4.162 15 C 0.031 3.969 16 C -0.551 4.551 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.162 4.162 25 C 0.005 3.995 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.240 0.760 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.122 0.878 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.244 -18.819 8.059 20.474 hybrid contribution -0.525 0.822 0.600 1.145 sum -0.281 -17.998 8.659 19.974 Atomic orbital electron populations 1.21758 0.93570 1.02322 1.03379 1.22525 0.95614 0.83411 1.00108 1.87805 1.18591 1.26782 1.94190 1.23350 0.82368 0.94684 1.05099 0.86800 1.24045 1.02830 1.02053 0.95374 1.21871 0.95455 0.90243 0.92123 0.84128 1.44471 1.15386 1.39650 1.37623 1.15811 0.84147 0.79360 0.79667 1.90844 1.20819 1.73640 1.62951 1.47458 1.12546 1.31860 1.43390 1.21739 0.82451 0.98888 0.97976 1.22015 1.00543 0.92996 1.00636 1.18623 0.92438 0.92997 0.92841 1.21188 1.43145 0.90934 0.99860 0.92764 1.24964 0.95115 0.98999 0.94904 1.69847 1.45024 1.31378 1.06644 0.86620 0.78518 0.84830 0.78166 1.20756 1.21270 1.20000 1.22032 0.99617 0.92686 1.01872 1.21779 0.99411 0.89566 0.88726 0.91050 0.91766 0.91631 0.93176 0.93278 0.87482 0.87875 0.76022 0.92175 0.91856 0.92911 0.92173 0.95457 0.92961 0.87811 0.94386 0.92548 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.48 6.53 37.16 0.24 0.72 16 3 O -0.36 -3.87 10.03 -35.23 -0.35 -4.22 16 4 C 0.00 0.05 6.44 -26.73 -0.17 -0.12 16 5 H 0.11 0.86 7.93 -51.93 -0.41 0.45 16 6 C -0.20 -2.05 10.41 -26.72 -0.28 -2.33 16 7 C 0.11 1.41 6.44 -67.93 -0.44 0.97 16 8 H 0.14 1.87 7.38 -51.93 -0.38 1.48 16 9 N -0.72 -10.82 5.38 -58.67 -0.32 -11.14 16 10 C 0.71 13.42 8.30 -86.92 -0.72 12.70 16 11 O -0.60 -13.19 15.34 5.28 0.08 -13.11 16 12 N -0.62 -11.72 2.97 -178.44 -0.53 -12.25 16 13 C 0.11 1.90 6.44 -3.68 -0.02 1.88 16 14 C -0.12 -2.44 5.30 -26.61 -0.14 -2.58 16 15 C 0.05 1.19 2.06 -91.73 -0.19 1.00 16 16 C -0.51 -13.78 8.56 -34.44 -0.29 -14.08 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -24.95 11.30 55.43 0.63 -24.32 16 20 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.12 -2.91 5.15 -26.61 -0.14 -3.05 16 25 C 0.13 2.64 6.42 -3.71 -0.02 2.62 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.40 5.61 5.85 -40.82 -0.24 5.38 16 34 H 0.06 0.85 5.57 -51.92 -0.29 0.56 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.10 2.71 6.03 -51.93 -0.31 2.40 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.62 7.03 -51.93 -0.37 1.25 16 LS Contribution 345.21 15.07 5.20 5.20 Total: -1.00 -30.81 345.21 -9.24 -40.05 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.04 Total: 5.12 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.89 Total: -1.41 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.22 Total: -47.71 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.27 Total: -17.33 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.81 -9.24 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573527809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.632 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds