Wall clock time and date at job start Tue Mar 31 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47355 * 2 1 4 4 C 1.42901 * 114.00231 * 179.97438 * 3 2 1 5 5 H 1.08993 * 115.55973 * 355.68652 * 4 3 2 6 6 C 1.52993 * 117.49757 * 141.37812 * 4 3 2 7 7 C 1.52992 * 60.00135 * 107.48691 * 6 4 3 8 8 H 1.08998 * 117.50255 * 252.48335 * 7 6 4 9 9 N 1.46509 * 117.50133 * 107.48763 * 7 6 4 10 10 C 1.34773 * 119.99865 * 136.39284 * 9 7 6 11 11 O 1.21585 * 120.00642 * 5.07018 * 10 9 7 12 12 N 1.34775 * 119.99548 * 185.07796 * 10 9 7 13 13 C 1.46924 * 120.63159 * 174.96204 * 12 10 9 14 14 C 1.53200 * 108.89456 * 233.55608 * 13 12 10 15 15 C 1.53074 * 109.29270 * 305.57637 * 14 13 12 16 16 C 1.50702 * 109.43904 * 181.23348 * 15 14 13 17 17 H 1.07997 * 120.00265 * 239.79558 * 16 15 14 18 18 C 1.37877 * 119.99623 * 59.79741 * 16 15 14 19 19 N 1.31509 * 120.00307 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99695 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47183 * 60.00047 * 20 18 16 22 22 H 1.48504 * 109.46749 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46740 * 299.99864 * 20 18 16 24 24 C 1.53041 * 109.65925 * 61.15251 * 15 14 13 25 25 C 1.46925 * 120.63439 * 354.98047 * 12 10 9 26 26 H 1.09003 * 109.47355 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47636 * 300.00311 * 1 2 3 28 28 H 1.09000 * 109.47218 * 59.99958 * 1 2 3 29 29 H 1.08997 * 109.47636 * 239.99689 * 2 1 3 30 30 H 1.09003 * 109.46702 * 119.99502 * 2 1 3 31 31 H 1.09004 * 117.50195 * 359.97438 * 6 4 3 32 32 H 1.09001 * 117.52081 * 214.97181 * 6 4 3 33 33 H 0.97000 * 119.99583 * 316.39361 * 9 7 6 34 34 H 1.09003 * 109.58820 * 353.41568 * 13 12 10 35 35 H 1.08997 * 109.58937 * 113.70149 * 13 12 10 36 36 H 1.08999 * 109.49598 * 65.38684 * 14 13 12 37 37 H 1.09001 * 109.49618 * 185.48286 * 14 13 12 38 38 H 1.08997 * 109.34585 * 301.12589 * 15 14 13 39 39 H 0.97002 * 120.00195 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.49897 * 178.74173 * 24 15 14 41 41 H 1.09007 * 109.52251 * 58.66738 * 24 15 14 42 42 H 1.08999 * 109.59201 * 246.16155 * 25 12 10 43 43 H 1.09002 * 109.58703 * 6.44309 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9771 0.5198 0.0749 6 6 4.0517 2.5727 -0.8464 7 6 4.0420 2.6877 0.6792 8 1 3.3578 3.4095 1.1252 9 7 5.3166 2.5093 1.3792 10 6 5.6567 3.3425 2.3825 11 8 4.8680 4.1835 2.7682 12 7 6.8714 3.2435 2.9580 13 6 7.2987 4.2130 3.9759 14 6 8.6474 4.8082 3.5588 15 6 9.6448 3.6744 3.3085 16 6 10.9813 4.2571 2.9274 17 1 11.4234 4.0152 1.9722 18 6 11.6398 5.0992 3.7983 19 7 11.1018 5.3933 4.9617 20 14 13.2968 5.8210 3.3261 21 1 13.1506 6.6282 2.0883 22 1 13.7907 6.6877 4.4262 23 1 14.2661 4.7213 3.0885 24 6 9.1357 2.7818 2.1744 25 6 7.7936 2.1642 2.5793 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.3736 3.2184 -1.4044 32 1 5.0065 2.3649 -1.3294 33 1 5.9156 1.7915 1.1206 34 1 6.5577 5.0083 4.0569 35 1 7.4027 3.7111 4.9378 36 1 8.5219 5.3883 2.6446 37 1 9.0205 5.4554 4.3526 38 1 9.7529 3.0814 4.2167 39 1 11.5649 5.9860 5.5742 40 1 9.8584 1.9885 1.9833 41 1 9.0041 3.3789 1.2720 42 1 7.9403 1.4947 3.4268 43 1 7.3779 1.6060 1.7404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573527810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:05 Heat of formation + Delta-G solvation = -47.448140 kcal Electronic energy + Delta-G solvation = -22313.904908 eV Core-core repulsion = 18974.180192 eV Total energy + Delta-G solvation = -3339.724715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10517 -38.75255 -37.00170 -35.87703 -33.65142 -32.56499 -31.09156 -30.78535 -29.82280 -26.17117 -23.33603 -23.16388 -22.60796 -22.28499 -21.60183 -20.27641 -18.99515 -17.75888 -17.27000 -16.31617 -16.06561 -15.80345 -15.08652 -14.97011 -14.56773 -14.34376 -13.75162 -13.25409 -13.09506 -13.01348 -12.82428 -12.72933 -12.51410 -12.37728 -12.24799 -11.79662 -11.56313 -11.27168 -11.12915 -11.10421 -10.92451 -10.69247 -10.44200 -10.07304 -9.83504 -9.56752 -9.55095 -9.21039 -8.94199 -8.68331 -8.36648 -7.90755 -6.02044 -4.09045 2.70458 3.29185 3.29920 3.35106 3.37085 3.44914 3.89706 4.14300 4.40785 4.55983 4.68296 4.73421 4.80340 5.00950 5.08244 5.24474 5.27484 5.32337 5.48893 5.58456 5.65706 5.72423 5.73558 5.81020 5.88748 6.06170 6.27764 6.40655 6.48020 6.57564 6.62123 6.78937 6.95833 6.98082 7.13088 7.22992 7.47191 7.70320 7.92377 8.05464 8.26252 8.39635 8.90572 8.93985 9.56006 11.03276 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041968 B = 0.002983 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.009974 B = 9383.253382 C = 9602.683371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.354 6.354 4 C 0.006 3.994 5 H 0.109 0.891 6 C -0.196 4.196 7 C 0.110 3.890 8 H 0.142 0.858 9 N -0.723 5.723 10 C 0.709 3.291 11 O -0.596 6.596 12 N -0.617 5.617 13 C 0.126 3.874 14 C -0.123 4.123 15 C 0.049 3.951 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.278 1.278 24 C -0.123 4.123 25 C 0.113 3.887 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.396 0.604 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.104 0.896 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.567 -11.473 -9.230 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.272 6.272 4 C -0.054 4.054 5 H 0.127 0.873 6 C -0.236 4.236 7 C 0.002 3.998 8 H 0.160 0.840 9 N -0.379 5.379 10 C 0.411 3.589 11 O -0.475 6.475 12 N -0.353 5.353 13 C 0.005 3.995 14 C -0.162 4.162 15 C 0.031 3.969 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.719 3.281 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.162 4.162 25 C -0.011 4.011 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.232 0.768 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.122 0.878 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.200 -10.567 -8.733 20.469 hybrid contribution 1.479 -0.251 -0.488 1.577 sum -13.721 -10.818 -9.221 19.757 Atomic orbital electron populations 1.21754 0.93600 1.02314 1.03287 1.22544 0.95616 0.83535 1.00212 1.87862 1.18525 1.26664 1.94140 1.23290 0.82276 0.94710 1.05095 0.87336 1.24114 1.02419 1.01819 0.95200 1.21827 0.87253 0.99934 0.90747 0.83998 1.44680 1.20722 1.35274 1.37245 1.15787 0.82385 0.81416 0.79341 1.90867 1.50836 1.39415 1.66384 1.47459 1.13560 1.31406 1.42844 1.21792 0.98255 0.90814 0.88673 1.22045 0.91534 1.00509 1.02108 1.18623 0.93343 0.92096 0.92838 1.21138 1.03298 1.28220 1.02620 0.92816 1.24964 0.97683 0.96357 0.94953 1.69829 1.38392 1.36374 1.08253 0.86678 0.84290 0.79096 0.78034 1.20351 1.21296 1.20344 1.22011 0.93484 0.99728 1.00954 1.21724 0.91489 0.89036 0.98802 0.91012 0.91688 0.91807 0.93207 0.93134 0.87348 0.87809 0.76754 0.90530 0.92499 0.94354 0.87751 0.95483 0.92861 0.92144 0.92856 0.91798 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.06 0.47 6.53 37.16 0.24 0.71 16 3 O -0.35 -3.97 10.60 -35.23 -0.37 -4.34 16 4 C 0.01 0.06 6.37 -26.74 -0.17 -0.11 16 5 H 0.11 0.90 7.93 -51.93 -0.41 0.49 16 6 C -0.20 -2.00 10.40 -26.74 -0.28 -2.27 16 7 C 0.11 1.42 6.39 -67.93 -0.43 0.98 16 8 H 0.14 2.15 7.39 -51.93 -0.38 1.77 16 9 N -0.72 -10.07 5.48 -58.68 -0.32 -10.40 16 10 C 0.71 12.99 8.30 -86.92 -0.72 12.27 16 11 O -0.60 -13.01 15.34 5.29 0.08 -12.93 16 12 N -0.62 -11.25 2.97 -178.50 -0.53 -11.78 16 13 C 0.13 2.57 6.41 -3.71 -0.02 2.55 16 14 C -0.12 -2.85 5.16 -26.59 -0.14 -2.99 16 15 C 0.05 1.16 2.06 -91.71 -0.19 0.97 16 16 C -0.51 -13.60 8.56 -34.44 -0.29 -13.89 16 17 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 18 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -24.69 11.30 55.43 0.63 -24.06 16 20 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.12 -2.33 5.30 -26.61 -0.14 -2.47 16 25 C 0.11 1.77 6.43 -3.71 -0.02 1.75 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.40 4.48 6.28 -40.82 -0.26 4.23 16 34 H 0.08 1.60 7.03 -51.93 -0.37 1.24 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.10 2.69 6.03 -51.93 -0.31 2.38 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.70 5.56 -51.93 -0.29 0.41 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -30.73 346.18 -9.26 -39.99 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.06 Total: 4.04 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -1.88 Total: -1.60 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.23 Total: -46.24 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.29 Total: -17.26 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.73 -9.26 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573527810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.456 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds