Wall clock time and date at job start Tue Mar 31 2020 06:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.47000 * 2 1 4 4 C 1.42898 * 113.99768 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.55046 * 4.32918 * 4 3 2 6 6 C 1.52996 * 117.49972 * 218.62373 * 4 3 2 7 7 C 1.52997 * 117.50184 * 149.99901 * 4 3 2 8 8 H 1.09001 * 117.49629 * 359.97438 * 7 4 3 9 9 N 1.46494 * 117.50243 * 214.98196 * 7 4 3 10 10 C 1.34780 * 120.00164 * 154.99887 * 9 7 4 11 11 O 1.21584 * 119.99944 * 5.04301 * 10 9 7 12 12 N 1.34781 * 119.99825 * 185.04492 * 10 9 7 13 13 C 1.46923 * 120.63118 * 354.97283 * 12 10 9 14 14 C 1.53198 * 108.77592 * 126.37105 * 13 12 10 15 15 C 1.53035 * 109.31237 * 54.63004 * 14 13 12 16 16 C 1.50700 * 109.46257 * 178.62667 * 15 14 13 17 17 H 1.08003 * 119.99397 * 5.45043 * 16 15 14 18 18 C 1.37877 * 120.00437 * 185.44268 * 16 15 14 19 19 N 1.31518 * 119.99895 * 9.49214 * 18 16 15 20 20 Si 1.86795 * 119.99972 * 189.48381 * 18 16 15 21 21 H 1.48498 * 109.47104 * 94.99938 * 20 18 16 22 22 H 1.48507 * 109.46734 * 214.99350 * 20 18 16 23 23 H 1.48503 * 109.47425 * 334.99561 * 20 18 16 24 24 C 1.53043 * 109.53232 * 298.64712 * 15 14 13 25 25 C 1.46928 * 120.62588 * 174.95012 * 12 10 9 26 26 H 1.08994 * 109.46983 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46723 * 300.00334 * 1 2 3 28 28 H 1.09003 * 109.46867 * 59.99676 * 1 2 3 29 29 H 1.09000 * 109.47172 * 240.00286 * 2 1 3 30 30 H 1.08999 * 109.47365 * 119.99794 * 2 1 3 31 31 H 1.09003 * 117.50382 * 145.02135 * 6 4 3 32 32 H 1.08997 * 117.49921 * 359.97438 * 6 4 3 33 33 H 0.97003 * 120.00052 * 334.99571 * 9 7 4 34 34 H 1.09001 * 109.58729 * 6.58425 * 13 12 10 35 35 H 1.09000 * 109.70429 * 246.22494 * 13 12 10 36 36 H 1.08999 * 109.49237 * 294.68556 * 14 13 12 37 37 H 1.08995 * 109.49805 * 174.58354 * 14 13 12 38 38 H 1.09009 * 109.46108 * 58.65816 * 15 14 13 39 39 H 0.96991 * 120.00184 * 179.97438 * 19 18 16 40 40 H 1.08996 * 109.50091 * 181.30993 * 24 15 14 41 41 H 1.08998 * 109.49494 * 301.40756 * 24 15 14 42 42 H 1.08995 * 109.58770 * 353.41473 * 25 12 10 43 43 H 1.08996 * 109.58475 * 113.70523 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9769 0.5197 -0.0752 6 6 4.0518 2.5727 0.8464 7 6 4.0421 2.6876 -0.6792 8 1 3.3576 3.4089 -1.1256 9 7 5.3166 2.5092 -1.3791 10 6 5.6570 3.3425 -2.3822 11 8 4.9511 4.2967 -2.6460 12 7 6.7800 3.1181 -3.0930 13 6 7.6997 2.0356 -2.7177 14 6 7.9373 1.1442 -3.9407 15 6 8.4237 2.0058 -5.1082 16 6 8.6907 1.1274 -6.3033 17 1 8.4469 0.0760 -6.2659 18 6 9.2462 1.6661 -7.4445 19 7 9.7144 2.8951 -7.4309 20 14 9.3339 0.6504 -9.0097 21 1 8.1586 0.9556 -9.8644 22 1 10.5805 0.9819 -9.7456 23 1 9.3326 -0.7937 -8.6634 24 6 7.3514 3.0383 -5.4636 25 6 7.1073 3.9512 -4.2582 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.0065 2.3645 1.3294 32 1 3.3737 3.2189 1.4038 33 1 5.9156 1.7913 -1.1206 34 1 7.2598 1.4444 -1.9145 35 1 8.6475 2.4579 -2.3837 36 1 7.0060 0.6497 -4.2168 37 1 8.6916 0.3941 -3.7031 38 1 9.3418 2.5194 -4.8227 39 1 10.1055 3.2739 -8.2336 40 1 7.6886 3.6364 -6.3102 41 1 6.4256 2.5259 -5.7254 42 1 6.2765 4.6237 -4.4715 43 1 8.0049 4.5335 -4.0505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573527811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:07 Heat of formation + Delta-G solvation = -48.842716 kcal Electronic energy + Delta-G solvation = -22371.844110 eV Core-core repulsion = 19032.058922 eV Total energy + Delta-G solvation = -3339.785189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12511 -38.75276 -37.01825 -35.88075 -33.63462 -32.57645 -31.10441 -30.77732 -29.90052 -26.16721 -23.33075 -23.14066 -22.65818 -22.28913 -21.61845 -20.30513 -19.03121 -17.76760 -17.26397 -16.32796 -16.07188 -15.78199 -15.09785 -15.03086 -14.54042 -14.32500 -13.78582 -13.17071 -13.12639 -13.07664 -12.78809 -12.70592 -12.60473 -12.35730 -12.28129 -11.76062 -11.54843 -11.27229 -11.25544 -11.10770 -10.91334 -10.68296 -10.46104 -10.17109 -9.84840 -9.61055 -9.56393 -9.12701 -9.00278 -8.69096 -8.35705 -7.93949 -6.05878 -4.07870 2.68142 3.28433 3.32696 3.36355 3.38461 3.41031 3.88210 4.13101 4.41323 4.55889 4.68276 4.75835 4.81447 5.03240 5.10908 5.24797 5.26399 5.31186 5.49097 5.61322 5.63457 5.70546 5.72641 5.83610 5.87668 6.03257 6.22070 6.37003 6.44110 6.55243 6.59730 6.75914 6.94044 6.98513 7.08143 7.16317 7.43042 7.67299 7.88065 7.95628 8.23541 8.38209 8.88306 8.95570 9.56001 11.02872 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.003385 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.931599 B = 8269.525169 C = 8904.287133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.354 6.354 4 C 0.007 3.993 5 H 0.110 0.890 6 C -0.197 4.197 7 C 0.111 3.889 8 H 0.142 0.858 9 N -0.722 5.722 10 C 0.709 3.291 11 O -0.596 6.596 12 N -0.616 5.616 13 C 0.112 3.888 14 C -0.123 4.123 15 C 0.048 3.952 16 C -0.517 4.517 17 H 0.054 0.946 18 C 0.064 3.936 19 N -0.887 5.887 20 Si 0.887 3.113 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.118 4.118 25 C 0.127 3.873 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.396 0.604 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.085 0.915 41 H 0.041 0.959 42 H 0.077 0.923 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.591 -4.840 16.172 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.272 6.272 4 C -0.053 4.053 5 H 0.127 0.873 6 C -0.236 4.236 7 C 0.003 3.997 8 H 0.159 0.841 9 N -0.379 5.379 10 C 0.411 3.589 11 O -0.475 6.475 12 N -0.353 5.353 13 C -0.011 4.011 14 C -0.162 4.162 15 C 0.030 3.970 16 C -0.555 4.555 17 H 0.072 0.928 18 C -0.138 4.138 19 N -0.525 5.525 20 Si 0.715 3.285 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.156 4.156 25 C 0.005 3.995 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.233 0.767 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.122 -3.844 15.803 19.703 hybrid contribution 0.588 -1.226 -0.744 1.550 sum -10.534 -5.070 15.059 19.064 Atomic orbital electron populations 1.21755 0.93586 1.02347 1.03258 1.22556 0.95627 0.83460 1.00295 1.87856 1.18458 1.26759 1.94127 1.23286 0.82371 0.94739 1.04892 0.87266 1.24105 1.02356 1.01926 0.95211 1.21819 0.87226 0.99973 0.90713 0.84061 1.44678 1.20747 1.35064 1.37404 1.15781 0.81592 0.82300 0.79225 1.90868 1.54061 1.31078 1.71458 1.47421 1.21776 1.35166 1.30905 1.21737 0.92925 0.88650 0.97768 1.22016 1.00711 0.98008 0.95439 1.18633 0.93890 0.92727 0.91794 1.21142 1.41064 0.95136 0.98153 0.92758 1.24956 0.94800 0.95123 0.98873 1.69948 1.39275 1.14861 1.28459 0.86670 0.77467 0.80586 0.83821 1.20707 1.21317 1.19957 1.21956 0.99352 0.98289 0.96032 1.21748 1.00073 0.93103 0.84566 0.90983 0.91855 0.91655 0.93004 0.93207 0.87913 0.87390 0.76730 0.92414 0.91673 0.92962 0.92011 0.94712 0.92953 0.89649 0.94065 0.90480 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.49 6.53 37.16 0.24 0.73 16 3 O -0.35 -4.05 10.60 -35.23 -0.37 -4.42 16 4 C 0.01 0.07 6.37 -26.73 -0.17 -0.10 16 5 H 0.11 0.94 7.93 -51.93 -0.41 0.53 16 6 C -0.20 -1.91 10.40 -26.73 -0.28 -2.19 16 7 C 0.11 1.41 6.37 -67.94 -0.43 0.97 16 8 H 0.14 2.13 7.43 -51.93 -0.39 1.74 16 9 N -0.72 -9.95 5.48 -58.68 -0.32 -10.28 16 10 C 0.71 12.83 8.30 -86.91 -0.72 12.11 16 11 O -0.60 -12.85 15.37 5.29 0.08 -12.77 16 12 N -0.62 -11.10 2.97 -178.51 -0.53 -11.63 16 13 C 0.11 1.75 6.43 -3.71 -0.02 1.73 16 14 C -0.12 -2.32 5.30 -26.61 -0.14 -2.46 16 15 C 0.05 1.13 1.93 -91.73 -0.18 0.95 16 16 C -0.52 -13.65 8.48 -34.44 -0.29 -13.94 16 17 H 0.05 1.43 7.77 -52.48 -0.41 1.02 16 18 C 0.06 1.74 5.19 -17.82 -0.09 1.64 16 19 N -0.89 -24.80 12.15 55.43 0.67 -24.12 16 20 Si 0.89 20.88 29.55 -169.99 -5.02 15.86 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.12 -2.67 5.21 -26.62 -0.14 -2.81 16 25 C 0.13 2.54 6.42 -3.72 -0.02 2.52 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.40 4.43 6.28 -40.82 -0.26 4.17 16 34 H 0.06 0.70 5.57 -51.93 -0.29 0.41 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.03 0.89 8.09 -51.92 -0.42 0.47 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.09 2.15 6.87 -51.93 -0.36 1.79 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 1.58 7.03 -51.93 -0.37 1.21 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -30.88 347.62 -9.22 -40.11 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.10 Total: 3.59 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.87 Total: -1.57 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.18 Total: -46.03 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.29 Total: -17.19 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.88 -9.22 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573527811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.737 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds