Wall clock time and date at job start Tue Mar 31 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46861 * 2 1 4 4 N 1.46498 * 109.47340 * 239.99594 * 2 1 3 5 5 C 1.34777 * 119.99581 * 85.00088 * 4 2 1 6 6 O 1.21340 * 120.00426 * 359.97438 * 5 4 2 7 7 C 1.49456 * 119.99722 * 179.97438 * 5 4 2 8 8 O 1.21350 * 119.99727 * 0.02562 * 7 5 4 9 9 N 1.34779 * 120.00006 * 179.72217 * 7 5 4 10 10 C 1.46498 * 119.99866 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.47110 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47433 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47239 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00136 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99772 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00401 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99935 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47058 * 59.99813 * 17 15 13 19 19 H 1.48498 * 109.47296 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47084 * 299.99977 * 17 15 13 21 21 C 1.53004 * 109.47071 * 119.99638 * 2 1 3 22 22 C 1.53777 * 113.61349 * 282.60205 * 21 2 1 23 23 C 1.53958 * 87.02119 * 220.04630 * 22 21 2 24 24 C 1.53778 * 113.61465 * 184.99043 * 21 2 1 25 25 H 1.08997 * 109.47493 * 300.39920 * 1 2 3 26 26 H 1.08996 * 109.46994 * 60.40133 * 1 2 3 27 27 H 1.09002 * 109.46856 * 180.39684 * 1 2 3 28 28 H 0.96997 * 120.00157 * 265.00104 * 4 2 1 29 29 H 0.96994 * 119.99413 * 0.02562 * 9 7 5 30 30 H 1.09001 * 109.47063 * 300.00487 * 10 9 7 31 31 H 1.08996 * 109.47329 * 60.00124 * 10 9 7 32 32 H 1.09005 * 109.46982 * 300.00415 * 11 10 9 33 33 H 1.08996 * 109.47174 * 59.99722 * 11 10 9 34 34 H 1.09001 * 109.46881 * 300.00266 * 12 11 10 35 35 H 1.09004 * 109.47115 * 59.99972 * 12 11 10 36 36 H 0.96993 * 120.00413 * 179.97438 * 16 15 13 37 37 H 1.08997 * 112.84875 * 53.79421 * 21 2 1 38 38 H 1.08997 * 113.61731 * 334.56322 * 22 21 2 39 39 H 1.09002 * 113.61851 * 105.47274 * 22 21 2 40 40 H 1.09000 * 113.53597 * 270.81462 * 23 22 21 41 41 H 1.08994 * 113.74584 * 139.93624 * 23 22 21 42 42 H 1.08995 * 113.61739 * 254.53184 * 24 21 2 43 43 H 1.08999 * 113.61068 * 25.43771 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3570 6 8 1.8581 1.1589 -2.4117 7 6 2.6459 -0.7228 -3.5772 8 8 2.9345 -1.9002 -3.5226 9 7 2.7693 -0.0518 -4.7395 10 6 3.2577 -0.7425 -5.9356 11 6 3.3033 0.2390 -7.1084 12 6 3.8127 -0.4824 -8.3578 13 6 3.8569 0.4842 -9.5131 14 1 3.5526 1.5105 -9.3704 15 6 4.2870 0.0585 -10.7520 16 7 4.6591 -1.1909 -10.9254 17 14 4.3425 1.2568 -12.1839 18 1 5.2555 2.3806 -11.8538 19 1 4.8369 0.5566 -13.3965 20 1 2.9787 1.7859 -12.4398 21 6 2.0400 -0.7212 1.2493 22 6 1.9555 0.1281 2.5285 23 6 3.3265 -0.4579 2.9120 24 6 3.5687 -0.6715 1.4084 25 1 -0.3634 0.5200 0.8863 26 1 -0.3633 0.5076 -0.8935 27 1 -0.3633 -1.0277 0.0071 28 1 2.2491 -1.6318 -1.1525 29 1 2.5348 0.8883 -4.7840 30 1 4.2589 -1.1305 -5.7478 31 1 2.5879 -1.5676 -6.1777 32 1 2.3022 0.6273 -7.2963 33 1 3.9733 1.0638 -6.8661 34 1 4.8136 -0.8711 -8.1701 35 1 3.1422 -1.3071 -8.6000 36 1 4.9612 -1.4905 -11.7970 37 1 1.6217 -1.7215 1.3610 38 1 1.9764 1.2018 2.3419 39 1 1.1492 -0.1705 3.1985 40 1 3.2598 -1.3861 3.4796 41 1 4.0028 0.2673 3.3644 42 1 4.0629 -1.6146 1.1753 43 1 4.0314 0.1833 0.9150 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588053819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:49 Heat of formation + Delta-G solvation = -78.577381 kcal Electronic energy + Delta-G solvation = -21464.032866 eV Core-core repulsion = 18122.958285 eV Total energy + Delta-G solvation = -3341.074581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78564 -39.52012 -38.28469 -35.81607 -35.02890 -33.32003 -31.24105 -31.06046 -27.26681 -26.40967 -25.75959 -24.72538 -22.83121 -21.44288 -20.76007 -20.45318 -19.65405 -18.32639 -17.02414 -16.35966 -16.18747 -15.89844 -15.55095 -15.32254 -14.79146 -14.63146 -14.43329 -13.89904 -13.72756 -13.29037 -12.98718 -12.84116 -12.53670 -12.30147 -12.21781 -11.89293 -11.80044 -11.72221 -11.55360 -10.95446 -10.89209 -10.79354 -10.75070 -10.65353 -10.63088 -9.89749 -9.75982 -9.43120 -9.34838 -9.14051 -8.97032 -8.37673 -6.02519 -4.05632 1.44627 2.35524 3.25031 3.32568 3.37085 3.39325 3.63795 4.14219 4.18906 4.27871 4.43854 4.45664 4.54682 4.77841 4.86335 5.02553 5.27119 5.31603 5.33270 5.34900 5.40377 5.51564 5.57648 5.59858 5.61066 5.69435 5.78239 5.88175 6.04195 6.08324 6.13778 6.28130 6.54256 6.70143 6.95215 6.96342 7.43306 7.61495 7.73399 7.75809 7.95692 8.07013 8.36956 9.00643 9.58613 11.08716 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043935 B = 0.002322 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.150952 B =12053.615928 C =12227.436640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 H 0.092 0.908 4 N -0.697 5.697 5 C 0.509 3.491 6 O -0.522 6.522 7 C 0.499 3.501 8 O -0.527 6.527 9 N -0.692 5.692 10 C 0.114 3.886 11 C -0.123 4.123 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.137 4.137 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.412 0.588 29 H 0.411 0.589 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.262 0.738 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 1.027 27.693 28.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 H 0.110 0.890 4 N -0.350 5.350 5 C 0.290 3.710 6 O -0.397 6.397 7 C 0.279 3.721 8 O -0.404 6.404 9 N -0.343 5.343 10 C -0.008 4.008 11 C -0.161 4.161 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.141 4.141 22 C -0.167 4.167 23 C -0.180 4.180 24 C -0.174 4.174 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.248 0.752 29 H 0.247 0.753 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.045 0.908 27.529 28.199 hybrid contribution 0.035 0.540 -0.910 1.059 sum -6.010 1.448 26.618 27.327 Atomic orbital electron populations 1.22166 0.94810 1.02442 1.02798 1.21116 0.94365 0.97250 0.82725 0.89043 1.45810 1.65517 1.14971 1.08740 1.20339 0.78817 0.86995 0.84828 1.90750 1.48695 1.15431 1.84872 1.20057 0.80154 0.87157 0.84751 1.90756 1.49313 1.15270 1.85056 1.46072 1.63891 1.15167 1.09206 1.21839 0.99645 0.96444 0.82913 1.21926 1.01432 0.97840 0.94866 1.19028 0.96571 0.95739 0.89963 1.21163 1.44100 0.96488 0.94397 0.92621 1.25028 0.95321 0.95207 0.98915 1.69949 1.44214 1.15396 1.23755 0.86627 0.78427 0.81078 0.81675 1.20219 1.21285 1.20227 1.22896 0.97044 1.00204 0.93934 1.22909 0.97848 0.99788 0.96125 1.22847 0.97330 1.01279 0.96582 1.22925 0.95363 1.02660 0.96462 0.91302 0.91870 0.92239 0.75207 0.75334 0.91117 0.91108 0.92440 0.92436 0.96203 0.96204 0.92858 0.88491 0.89751 0.91126 0.90133 0.91299 0.91159 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.43 37.16 0.35 -0.90 16 2 C 0.15 1.22 2.28 -67.93 -0.15 1.06 16 3 H 0.09 0.86 7.49 -51.93 -0.39 0.48 16 4 N -0.70 -6.98 4.93 -54.24 -0.27 -7.25 16 5 C 0.51 6.67 7.85 -11.58 -0.09 6.58 16 6 O -0.52 -7.76 16.14 5.51 0.09 -7.67 16 7 C 0.50 7.49 7.89 -11.58 -0.09 7.40 16 8 O -0.53 -8.96 16.48 5.50 0.09 -8.87 16 9 N -0.69 -10.46 5.55 -60.73 -0.34 -10.80 16 10 C 0.11 1.96 5.67 -4.04 -0.02 1.94 16 11 C -0.12 -2.39 5.27 -26.73 -0.14 -2.54 16 12 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 13 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 17 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.12 -0.75 3.17 -89.81 -0.28 -1.03 16 22 C -0.13 -0.68 7.50 -25.83 -0.19 -0.87 16 23 C -0.14 -0.78 8.09 -25.82 -0.21 -0.98 16 24 C -0.14 -0.90 7.51 -25.91 -0.19 -1.09 16 25 H 0.07 0.42 8.06 -51.93 -0.42 0.00 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.41 3.77 8.07 -40.82 -0.33 3.44 16 29 H 0.41 5.69 7.94 -40.82 -0.32 5.36 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.45 8.04 -51.93 -0.42 0.03 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 361.05 15.07 5.44 5.44 Total: -1.00 -31.51 361.05 -8.19 -39.69 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.34 Total: 2.27 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.58 Total: -3.35 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.13 Total: -44.03 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.18 Total: -16.54 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.51 -8.19 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588053819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.885 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds