Wall clock time and date at job start Tue Mar 31 2020 05:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 5 5 C 1.34774 * 119.99618 * 275.00242 * 4 2 1 6 6 O 1.21349 * 120.00196 * 359.97438 * 5 4 2 7 7 C 1.49450 * 119.99936 * 179.97438 * 5 4 2 8 8 O 1.21349 * 119.99868 * 359.97438 * 7 5 4 9 9 N 1.34778 * 120.00249 * 179.97438 * 7 5 4 10 10 C 1.46496 * 119.99951 * 180.02562 * 9 7 5 11 11 C 1.53004 * 109.47213 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47383 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47212 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99792 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00452 * 179.97438 * 13 12 11 16 16 N 1.31525 * 119.99628 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00701 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47024 * 59.99730 * 17 15 13 19 19 H 1.48490 * 109.47590 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46631 * 300.00113 * 17 15 13 21 21 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 22 22 C 1.53781 * 113.61476 * 157.49826 * 21 2 1 23 23 C 1.53779 * 87.07812 * 220.01608 * 22 21 2 24 24 C 1.53776 * 113.61550 * 59.99962 * 21 2 1 25 25 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 27 27 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 28 28 H 0.96990 * 120.00057 * 94.99539 * 4 2 1 29 29 H 0.97001 * 119.99515 * 359.97438 * 9 7 5 30 30 H 1.09005 * 109.47129 * 299.99778 * 10 9 7 31 31 H 1.08998 * 109.47723 * 60.00008 * 10 9 7 32 32 H 1.09003 * 109.46825 * 300.00481 * 11 10 9 33 33 H 1.09005 * 109.47139 * 59.99558 * 11 10 9 34 34 H 1.09005 * 109.46998 * 299.99837 * 12 11 10 35 35 H 1.08991 * 109.47366 * 59.99829 * 12 11 10 36 36 H 0.96995 * 119.99910 * 180.02562 * 16 15 13 37 37 H 1.08997 * 112.84405 * 288.80059 * 21 2 1 38 38 H 1.08993 * 113.61731 * 334.56827 * 22 21 2 39 39 H 1.08999 * 113.61144 * 105.46995 * 22 21 2 40 40 H 1.08997 * 113.61529 * 270.88346 * 23 22 21 41 41 H 1.09006 * 113.69033 * 139.99076 * 23 22 21 42 42 H 1.09003 * 113.61248 * 254.53555 * 24 21 2 43 43 H 1.09003 * 113.61486 * 25.42978 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8588 1.1593 2.4115 7 6 2.6447 -0.7228 3.5775 8 8 2.9325 -1.9004 3.5232 9 7 2.7739 -0.0503 4.7384 10 6 3.2623 -0.7409 5.9345 11 6 3.3150 0.2425 7.1054 12 6 3.8257 -0.4785 8.3545 13 6 3.8769 0.4899 9.5079 14 1 3.5758 1.5171 9.3643 15 6 4.3082 0.0648 10.7465 16 7 4.6744 -1.1863 10.9215 17 14 4.3724 1.2654 12.1761 18 1 3.0116 1.8007 12.4345 19 1 4.8668 0.5653 13.3888 20 1 5.2894 2.3846 11.8417 21 6 2.0400 -0.7213 -1.2493 22 6 3.4727 -0.3277 -1.6461 23 6 2.9921 -0.3574 -3.1066 24 6 1.5811 -0.0724 -2.5657 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.2490 -1.6317 1.1526 29 1 2.5442 0.8911 4.7816 30 1 2.5895 -1.5627 6.1797 31 1 4.2614 -1.1334 5.7450 32 1 3.9879 1.0641 6.8599 33 1 2.3161 0.6355 7.2951 34 1 3.1530 -1.3003 8.6002 35 1 4.8245 -0.8711 8.1646 36 1 4.9775 -1.4855 11.7930 37 1 1.8759 -1.7982 -1.2128 38 1 3.7639 0.6647 -1.3023 39 1 4.2151 -1.0916 -1.4151 40 1 3.0896 -1.3351 -3.5785 41 1 3.3969 0.4497 -3.7173 42 1 0.7965 -0.6301 -3.0772 43 1 1.3552 0.9900 -2.4734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588053820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:51 Heat of formation + Delta-G solvation = -78.163187 kcal Electronic energy + Delta-G solvation = -21426.135201 eV Core-core repulsion = 18085.078581 eV Total energy + Delta-G solvation = -3341.056620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78141 -39.54656 -38.29922 -35.82234 -35.03701 -33.31916 -31.23970 -31.02789 -27.27558 -26.51264 -25.67226 -24.73439 -22.84218 -21.44806 -20.76737 -20.51126 -19.59349 -18.31668 -17.03959 -16.36007 -16.20620 -15.92226 -15.48387 -15.30493 -14.79994 -14.61661 -14.43097 -13.94035 -13.75235 -13.36175 -12.99973 -12.90001 -12.52496 -12.30055 -12.08794 -11.89335 -11.80091 -11.73149 -11.55044 -10.94383 -10.89197 -10.80891 -10.75114 -10.69035 -10.63108 -9.89752 -9.75948 -9.42795 -9.34679 -9.14031 -8.97064 -8.37577 -6.02506 -4.05611 1.44487 2.35963 3.24899 3.32594 3.37117 3.39351 3.64472 4.11334 4.19085 4.27133 4.43619 4.44436 4.54314 4.76590 4.88869 5.03925 5.26314 5.30492 5.32641 5.33264 5.40425 5.50799 5.57484 5.59785 5.60149 5.69439 5.77605 5.88661 6.00668 6.08316 6.15948 6.28099 6.54250 6.70093 6.95165 6.95962 7.43086 7.61514 7.73431 7.75639 7.95736 8.06929 8.36975 9.00656 9.58628 11.08717 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046217 B = 0.002289 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.688723 B =12228.884603 C =12379.205194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 H 0.092 0.908 4 N -0.698 5.698 5 C 0.509 3.491 6 O -0.522 6.522 7 C 0.499 3.501 8 O -0.527 6.527 9 N -0.692 5.692 10 C 0.114 3.886 11 C -0.123 4.123 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.121 4.121 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.128 4.128 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.412 0.588 29 H 0.411 0.589 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.262 0.738 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 1.086 -27.817 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 H 0.110 0.890 4 N -0.351 5.351 5 C 0.290 3.710 6 O -0.397 6.397 7 C 0.279 3.721 8 O -0.404 6.404 9 N -0.343 5.343 10 C -0.008 4.008 11 C -0.161 4.161 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.140 4.140 22 C -0.175 4.175 23 C -0.181 4.181 24 C -0.166 4.166 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.248 0.752 29 H 0.247 0.753 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.336 0.966 -27.653 28.386 hybrid contribution 0.059 0.534 0.916 1.063 sum -6.277 1.501 -26.737 27.505 Atomic orbital electron populations 1.22169 0.94787 1.02484 1.02797 1.21129 0.94379 0.97283 0.82666 0.89014 1.45844 1.65550 1.14937 1.08778 1.20341 0.78798 0.87004 0.84838 1.90752 1.48677 1.15410 1.84900 1.20054 0.80152 0.87162 0.84745 1.90755 1.49349 1.15297 1.85011 1.46073 1.63928 1.15012 1.09318 1.21841 0.99643 0.96444 0.82918 1.21929 1.01423 0.97825 0.94890 1.19026 0.96565 0.95744 0.89969 1.21163 1.44118 0.96374 0.94482 0.92623 1.25032 0.95336 0.95213 0.98907 1.69957 1.44300 1.15310 1.23748 0.86622 0.78426 0.81082 0.81656 1.20231 1.21286 1.20222 1.22880 0.97182 1.00501 0.93434 1.22978 0.96053 1.02264 0.96160 1.22817 0.96620 1.02083 0.96562 1.22877 0.97245 1.01241 0.95279 0.92226 0.91889 0.91244 0.75216 0.75329 0.91108 0.91113 0.92437 0.92435 0.96202 0.96200 0.92864 0.88496 0.89870 0.91217 0.90130 0.91305 0.91129 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.29 37.16 0.35 -0.91 16 2 C 0.15 1.22 2.40 -67.93 -0.16 1.06 16 3 H 0.09 0.87 7.38 -51.93 -0.38 0.49 16 4 N -0.70 -7.01 5.07 -54.23 -0.28 -7.28 16 5 C 0.51 6.69 7.85 -11.59 -0.09 6.59 16 6 O -0.52 -7.78 16.14 5.50 0.09 -7.69 16 7 C 0.50 7.50 7.89 -11.58 -0.09 7.41 16 8 O -0.53 -8.98 16.48 5.50 0.09 -8.89 16 9 N -0.69 -10.47 5.55 -60.73 -0.34 -10.81 16 10 C 0.11 1.96 5.67 -4.04 -0.02 1.94 16 11 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 12 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 13 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 17 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.12 -0.74 3.31 -89.81 -0.30 -1.04 16 22 C -0.14 -0.88 7.63 -25.92 -0.20 -1.08 16 23 C -0.14 -0.76 8.08 -25.92 -0.21 -0.96 16 24 C -0.13 -0.66 6.68 -25.92 -0.17 -0.83 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.42 7.45 -51.93 -0.39 0.03 16 28 H 0.41 3.75 8.07 -40.82 -0.33 3.42 16 29 H 0.41 5.69 7.94 -40.82 -0.32 5.37 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.59 7.96 -51.93 -0.41 0.17 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -31.57 359.80 -8.18 -39.75 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.30 Total: 2.23 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.59 Total: -3.27 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.12 Total: -44.08 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.18 Total: -16.57 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.57 -8.18 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588053820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.414 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds