Wall clock time and date at job start Tue Mar 31 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47196 * 2 1 4 4 C 1.45655 * 117.70626 * 269.98005 * 3 2 1 5 5 C 1.53461 * 110.73947 * 158.00129 * 4 3 2 6 6 N 1.47269 * 107.93519 * 46.91184 * 5 4 3 7 7 C 1.34784 * 121.35305 * 118.51221 * 6 5 4 8 8 O 1.21283 * 119.99649 * 359.71730 * 7 6 5 9 9 C 1.50697 * 119.99774 * 179.44626 * 7 6 5 10 10 C 1.53003 * 109.46624 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46813 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47184 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47327 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99521 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00024 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00011 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00046 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47209 * 89.99772 * 17 15 13 19 19 H 1.48501 * 109.47275 * 210.00021 * 17 15 13 20 20 H 1.48506 * 109.47294 * 329.99924 * 17 15 13 21 21 C 1.47046 * 117.29467 * 298.24185 * 6 5 4 22 22 C 1.33383 * 117.70633 * 90.00261 * 3 2 1 23 23 O 1.21282 * 118.48594 * 4.26967 * 22 3 2 24 24 H 1.09003 * 109.46964 * 59.99541 * 1 2 3 25 25 H 1.09000 * 109.47182 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46797 * 299.99859 * 1 2 3 27 27 H 1.08997 * 109.47028 * 239.99848 * 2 1 3 28 28 H 1.08997 * 109.47202 * 119.99783 * 2 1 3 29 29 H 1.08997 * 109.21559 * 278.45684 * 4 3 2 30 30 H 1.08996 * 109.21452 * 37.78837 * 4 3 2 31 31 H 1.09006 * 109.85155 * 287.32233 * 5 4 3 32 32 H 1.09000 * 109.84275 * 166.50651 * 5 4 3 33 33 H 1.09001 * 109.46809 * 299.99238 * 9 7 6 34 34 H 1.08993 * 109.47525 * 59.99679 * 9 7 6 35 35 H 1.09001 * 109.46782 * 299.99104 * 10 9 7 36 36 H 1.08993 * 109.47555 * 59.99547 * 10 9 7 37 37 H 1.08998 * 109.47446 * 299.99771 * 11 10 9 38 38 H 1.09001 * 109.47095 * 59.99865 * 11 10 9 39 39 H 1.08998 * 109.47065 * 300.00400 * 12 11 10 40 40 H 1.09006 * 109.46890 * 59.99659 * 12 11 10 41 41 H 0.97001 * 120.00271 * 179.97438 * 16 15 13 42 42 H 1.09005 * 109.57083 * 162.80928 * 21 6 5 43 43 H 1.09000 * 109.56933 * 283.15830 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2445 2.0195 -1.2895 5 6 2.2146 3.5477 -1.1522 6 7 3.0473 3.9153 0.0055 7 6 4.1404 4.6912 -0.1350 8 8 4.4587 5.0974 -1.2326 9 6 4.9636 5.0590 1.0724 10 6 6.1378 5.9396 0.6401 11 6 6.9732 6.3136 1.8661 12 6 8.1478 7.1936 1.4338 13 6 8.9704 7.5625 2.6414 14 1 8.6842 7.2047 3.6194 15 6 10.0881 8.3568 2.4977 16 7 10.8056 8.6791 3.5516 17 14 10.5825 8.9763 0.8062 18 1 9.9260 10.2827 0.5460 19 1 12.0571 9.1438 0.7518 20 1 10.1576 7.9949 -0.2242 21 6 2.6343 3.4067 1.3219 22 6 2.2251 1.9659 1.1809 23 8 2.0759 1.3056 2.1873 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.2154 1.7110 -1.6772 30 1 1.4657 1.7080 -1.9855 31 1 1.1906 3.8848 -0.9905 32 1 2.6158 4.0082 -2.0549 33 1 4.3428 5.6050 1.7828 34 1 5.3430 4.1523 1.5435 35 1 6.7587 5.3939 -0.0704 36 1 5.7580 6.8463 0.1693 37 1 6.3521 6.8593 2.5764 38 1 7.3531 5.4070 2.3372 39 1 8.7688 6.6476 0.7237 40 1 7.7682 8.1002 0.9623 41 1 11.5922 9.2376 3.4505 42 1 3.4675 3.4828 2.0206 43 1 1.7915 3.9911 1.6912 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:05 Heat of formation + Delta-G solvation = -80.378226 kcal Electronic energy + Delta-G solvation = -22054.993968 eV Core-core repulsion = 18713.841297 eV Total energy + Delta-G solvation = -3341.152671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19628 -39.58196 -36.87170 -35.67963 -35.08070 -32.67714 -31.80316 -30.51799 -29.87811 -27.64169 -26.07250 -24.33192 -23.33409 -21.92177 -20.26577 -20.05827 -18.71951 -17.66656 -17.45377 -16.69807 -16.52106 -15.98135 -15.83849 -15.66443 -14.76219 -14.35783 -14.22622 -14.12069 -13.95992 -13.54336 -13.02801 -12.75284 -12.71317 -12.62643 -12.43875 -12.30360 -12.15979 -11.85269 -11.75027 -11.44885 -11.13682 -10.75182 -10.65203 -10.55819 -10.01249 -9.83429 -9.65664 -9.45777 -9.28229 -9.11860 -9.02906 -8.49050 -5.99978 -3.97527 2.13061 2.29230 2.45282 2.68016 3.35310 3.42373 3.48040 3.92754 4.16119 4.38914 4.50257 4.52219 4.60293 4.73341 4.79589 4.88041 4.94526 4.95511 5.12819 5.19551 5.22593 5.28788 5.34285 5.34990 5.49657 5.67991 5.70953 5.81051 5.99400 6.01263 6.12496 6.38780 6.66010 6.77848 6.92499 6.93932 6.99554 7.37686 7.50478 7.66017 7.84916 7.94355 8.58821 9.05142 9.63240 11.13529 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036010 B = 0.002778 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.365937 B =10075.248322 C =10572.048756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.099 3.901 3 N -0.601 5.601 4 C 0.099 3.901 5 C 0.096 3.904 6 N -0.627 5.627 7 C 0.523 3.477 8 O -0.528 6.528 9 C -0.141 4.141 10 C -0.106 4.106 11 C -0.103 4.103 12 C -0.015 4.015 13 C -0.519 4.519 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.265 1.265 21 C 0.098 3.902 22 C 0.510 3.490 23 O -0.542 6.542 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.015 0.985 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.125 0.875 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.547 -16.351 -10.447 30.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.335 5.335 4 C -0.025 4.025 5 C -0.027 4.027 6 N -0.365 5.365 7 C 0.313 3.687 8 O -0.403 6.403 9 C -0.181 4.181 10 C -0.144 4.144 11 C -0.141 4.141 12 C -0.053 4.053 13 C -0.557 4.557 14 H 0.089 0.911 15 C -0.137 4.137 16 N -0.545 5.545 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.028 4.028 22 C 0.297 3.703 23 O -0.418 6.418 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.143 0.857 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -23.250 -16.338 -10.467 30.283 hybrid contribution 0.239 0.357 -0.836 0.940 sum -23.011 -15.982 -11.302 30.210 Atomic orbital electron populations 1.22095 0.95544 1.02456 1.02268 1.21555 0.94643 0.82434 1.03717 1.47310 1.65370 1.14844 1.05943 1.21901 1.02580 0.93217 0.84754 1.22020 0.95772 0.93217 0.91651 1.48330 1.27882 1.52601 1.07687 1.21128 0.79369 0.76466 0.91759 1.90706 1.68916 1.52761 1.27888 1.21860 0.98235 1.02418 0.95567 1.21499 0.94678 0.98783 0.99412 1.21482 0.97184 0.99953 0.95445 1.19575 0.93673 0.94697 0.97315 1.21182 1.09314 1.30911 0.94326 0.91088 1.25047 0.96210 0.95818 0.96577 1.69920 1.17548 1.37812 1.29216 0.86771 0.77434 0.79655 0.85409 1.20327 1.21470 1.18917 1.21934 1.03724 0.90565 0.86561 1.20308 0.77118 0.89737 0.83127 1.90768 1.52214 1.63311 1.35555 0.92597 0.91380 0.92205 0.90439 0.89201 0.90955 0.89377 0.90345 0.86845 0.88622 0.88799 0.91751 0.91683 0.92772 0.92788 0.96634 0.97056 0.92818 0.85708 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.23 37.16 0.38 -0.55 16 2 C 0.10 0.66 5.92 -4.04 -0.02 0.63 16 3 N -0.60 -4.69 2.81 -174.59 -0.49 -5.18 16 4 C 0.10 0.58 6.51 -4.26 -0.03 0.55 16 5 C 0.10 0.67 6.56 -3.38 -0.02 0.65 16 6 N -0.63 -5.80 2.97 -173.86 -0.52 -6.32 16 7 C 0.52 6.50 7.72 -10.98 -0.08 6.41 16 8 O -0.53 -8.43 15.46 5.56 0.09 -8.34 16 9 C -0.14 -1.71 4.15 -27.88 -0.12 -1.83 16 10 C -0.11 -1.72 4.50 -26.73 -0.12 -1.84 16 11 C -0.10 -2.00 5.15 -26.73 -0.14 -2.14 16 12 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 13 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 14 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 16 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 17 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 21 C 0.10 0.79 6.40 -5.02 -0.03 0.76 16 22 C 0.51 5.02 7.57 -11.73 -0.09 4.93 16 23 O -0.54 -7.13 16.18 5.56 0.09 -7.04 16 24 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.37 8.01 -51.93 -0.42 -0.05 16 28 H 0.09 0.76 7.10 -51.93 -0.37 0.39 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.30 8.07 -51.93 -0.42 -0.12 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.11 0.89 7.06 -51.93 -0.37 0.53 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.01 7.56 -51.93 -0.39 0.62 16 35 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 36 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 40 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.13 0.96 6.26 -51.93 -0.33 0.64 16 43 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -35.78 348.09 -7.58 -43.36 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -7.29 Total: -5.24 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.82 Total: -6.49 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.23 Total: -39.13 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.18 Total: -15.38 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.78 -7.58 -43.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.017 kcal (2) G-P(sol) polarization free energy of solvation -35.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds