Wall clock time and date at job start Tue Mar 31 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.56734 * 2 1 4 4 C 1.50439 * 109.57056 * 239.64539 * 2 1 3 5 5 O 1.21280 * 118.48728 * 47.48797 * 4 2 1 6 6 N 1.33379 * 123.02316 * 227.46850 * 4 2 1 7 7 C 1.46498 * 117.70494 * 184.34066 * 6 4 2 8 8 C 1.45650 * 124.58755 * 4.31821 * 6 4 2 9 9 C 1.53465 * 110.74157 * 337.97647 * 8 6 4 10 10 N 1.47045 * 109.57053 * 120.23508 * 2 1 3 11 11 C 1.34787 * 121.34921 * 342.54129 * 10 2 1 12 12 O 1.21274 * 120.00012 * 354.49114 * 11 10 2 13 13 C 1.50700 * 119.99544 * 174.49622 * 11 10 2 14 14 C 1.53001 * 109.46811 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47134 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47410 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.47508 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00194 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00426 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99642 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00358 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47123 * 59.99855 * 21 19 17 23 23 H 1.48494 * 109.47250 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47181 * 300.00224 * 21 19 17 25 25 H 1.08997 * 109.47214 * 310.36783 * 1 2 3 26 26 H 1.08998 * 109.46924 * 70.37075 * 1 2 3 27 27 H 1.09000 * 109.46601 * 190.36465 * 1 2 3 28 28 H 1.09000 * 109.47394 * 359.97438 * 7 6 4 29 29 H 1.09000 * 109.47049 * 120.00440 * 7 6 4 30 30 H 1.09006 * 109.47157 * 239.99972 * 7 6 4 31 31 H 1.08999 * 109.21916 * 98.43188 * 8 6 4 32 32 H 1.09001 * 109.21644 * 217.76314 * 8 6 4 33 33 H 1.09000 * 109.85382 * 287.32153 * 9 8 6 34 34 H 1.09001 * 109.84133 * 166.50386 * 9 8 6 35 35 H 1.09000 * 109.47618 * 59.99689 * 13 11 10 36 36 H 1.09004 * 109.47295 * 299.99796 * 13 11 10 37 37 H 1.09000 * 109.46959 * 60.00052 * 14 13 11 38 38 H 1.08995 * 109.47070 * 299.99819 * 14 13 11 39 39 H 1.09000 * 109.47232 * 59.99855 * 15 14 13 40 40 H 1.09004 * 109.47359 * 300.00159 * 15 14 13 41 41 H 1.09000 * 109.47216 * 59.99632 * 16 15 14 42 42 H 1.09004 * 109.46816 * 300.00279 * 16 15 14 43 43 H 0.97002 * 120.00088 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0339 -0.7163 -1.2232 5 8 1.5490 -0.4357 -2.2988 6 7 2.9897 -1.6456 -1.1792 7 6 3.4603 -2.1994 -2.4512 8 6 3.5988 -2.1480 0.0448 9 6 3.4268 -1.1413 1.1903 10 7 2.0226 -0.6977 1.1970 11 6 1.2228 -0.9172 2.2596 12 8 0.1036 -0.4507 2.2828 13 6 1.7196 -1.7423 3.4187 14 6 0.6251 -1.8363 4.4837 15 6 1.1291 -2.6745 5.6603 16 6 0.0345 -2.7692 6.7250 17 6 0.5312 -3.5942 7.8841 18 1 1.5278 -4.0099 7.8633 19 6 -0.2867 -3.8184 8.9713 20 7 -1.5004 -3.3126 8.9965 21 14 0.3287 -4.8416 10.4078 22 1 1.5341 -4.2005 10.9919 23 1 -0.7337 -4.9334 11.4413 24 1 0.6748 -6.2052 9.9320 25 1 -0.3633 0.6656 0.7829 26 1 -0.3633 0.3452 -0.9679 27 1 -0.3632 -1.0109 0.1849 28 1 2.9182 -1.7324 -3.2735 29 1 4.5268 -2.0031 -2.5606 30 1 3.2855 -3.2753 -2.4659 31 1 3.1267 -3.0913 0.3195 32 1 4.6620 -2.3163 -0.1265 33 1 4.0823 -0.2849 1.0320 34 1 3.6666 -1.6180 2.1408 35 1 2.6039 -1.2711 3.8476 36 1 1.9743 -2.7430 3.0696 37 1 -0.2594 -2.3074 4.0550 38 1 0.3708 -0.8356 4.8327 39 1 2.0139 -2.2039 6.0890 40 1 1.3832 -3.6753 5.3110 41 1 -0.8500 -3.2400 6.2960 42 1 -0.2199 -1.7685 7.0744 43 1 -2.0759 -3.4706 9.7611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588692271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:35 Heat of formation + Delta-G solvation = -69.822382 kcal Electronic energy + Delta-G solvation = -22383.407474 eV Core-core repulsion = 19042.712539 eV Total energy + Delta-G solvation = -3340.694935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31599 -39.51837 -36.90071 -35.47133 -34.89793 -32.88088 -31.87627 -30.03536 -29.13262 -27.40006 -25.78524 -24.59156 -23.56102 -22.29520 -20.19664 -19.95478 -18.66375 -17.81987 -17.24439 -16.24864 -16.22077 -16.07152 -15.81992 -15.60764 -14.68926 -14.48576 -14.19206 -13.87268 -13.52078 -13.20703 -13.04048 -12.66162 -12.61287 -12.42910 -12.31341 -12.07684 -11.96657 -11.77688 -11.61236 -11.58459 -10.99083 -10.56763 -10.54782 -10.50823 -10.43263 -9.63960 -9.44298 -9.22763 -9.17989 -8.99812 -8.92461 -8.31674 -5.96469 -3.99261 2.19035 2.35630 2.53128 2.73474 3.33979 3.38737 3.40554 3.95110 4.16672 4.42836 4.48400 4.56488 4.74071 4.87365 4.89483 4.97857 5.02001 5.05946 5.21908 5.26818 5.30934 5.38837 5.47145 5.60189 5.73883 5.82650 5.84911 6.04054 6.08684 6.24453 6.34753 6.50355 6.79944 6.92349 6.97361 7.10610 7.18861 7.70393 7.72108 7.88102 8.04516 8.08626 8.46107 9.08308 9.64432 11.14824 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034618 B = 0.002835 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.634751 B = 9873.964387 C =10405.987359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.137 3.863 3 H 0.103 0.897 4 C 0.512 3.488 5 O -0.541 6.541 6 N -0.607 5.607 7 C 0.068 3.932 8 C 0.097 3.903 9 C 0.093 3.907 10 N -0.627 5.627 11 C 0.521 3.479 12 O -0.517 6.517 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.522 4.522 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.071 4.055 -20.928 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.031 3.969 3 H 0.120 0.880 4 C 0.300 3.700 5 O -0.418 6.418 6 N -0.340 5.340 7 C -0.075 4.075 8 C -0.027 4.027 9 C -0.031 4.031 10 N -0.365 5.365 11 C 0.311 3.689 12 O -0.392 6.392 13 C -0.178 4.178 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.115 0.885 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.006 4.466 -21.332 25.380 hybrid contribution 0.606 -0.729 0.830 1.260 sum 13.612 3.737 -20.502 24.892 Atomic orbital electron populations 1.22092 0.89734 1.04566 1.03071 1.21329 0.98345 0.96026 0.81211 0.87989 1.20466 0.78845 0.79475 0.91250 1.90711 1.56566 1.64716 1.29817 1.47122 1.38594 1.40293 1.08009 1.21823 0.99769 0.99089 0.86823 1.21913 0.99196 0.97738 0.83844 1.22217 0.82612 0.98309 0.99941 1.48467 1.11919 1.59763 1.16377 1.21113 0.84936 0.80110 0.82784 1.90722 1.19840 1.49593 1.79040 1.21869 1.01824 0.99766 0.94327 1.21473 0.96486 1.01749 0.94469 1.21645 1.00221 0.97593 0.95274 1.19084 0.93269 0.97068 0.92258 1.21240 1.00010 1.32239 1.02534 0.92819 1.25040 0.94944 0.96055 0.98491 1.69960 1.07596 1.45179 1.30699 0.86674 0.78375 0.80798 0.82223 1.20280 1.21312 1.20290 0.88483 0.91725 0.91971 0.88976 0.91983 0.92042 0.90805 0.89155 0.89988 0.86916 0.89022 0.89082 0.91745 0.91679 0.93466 0.93503 0.96610 0.96595 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.63 37.16 0.28 -1.46 16 2 C 0.14 1.49 3.67 -68.91 -0.25 1.24 16 3 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.51 5.82 7.09 -11.73 -0.08 5.74 16 5 O -0.54 -7.79 15.17 5.56 0.08 -7.71 16 6 N -0.61 -5.15 3.20 -182.48 -0.58 -5.73 16 7 C 0.07 0.46 10.43 59.85 0.62 1.09 16 8 C 0.10 0.53 6.60 -4.26 -0.03 0.50 16 9 C 0.09 0.54 6.47 -3.38 -0.02 0.52 16 10 N -0.63 -6.24 2.97 -166.25 -0.49 -6.74 16 11 C 0.52 6.70 7.39 -10.98 -0.08 6.61 16 12 O -0.52 -8.54 12.18 5.56 0.07 -8.47 16 13 C -0.14 -1.64 4.11 -27.88 -0.11 -1.76 16 14 C -0.10 -1.75 4.50 -26.73 -0.12 -1.87 16 15 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 16 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 17 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 18 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.10 1.34 6.38 -51.93 -0.33 1.00 16 26 H 0.06 0.80 7.56 -51.93 -0.39 0.41 16 27 H 0.06 0.89 7.39 -51.93 -0.38 0.50 16 28 H 0.09 0.81 6.59 -51.93 -0.34 0.47 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.25 8.07 -51.93 -0.42 -0.17 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.11 0.48 6.05 -51.93 -0.31 0.17 16 35 H 0.09 0.89 7.59 -51.93 -0.39 0.50 16 36 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 38 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -35.15 343.49 -7.70 -42.85 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -7.18 Total: -4.53 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -0.48 Total: -4.91 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: -0.34 Total: -39.05 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.15 Total: -16.18 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.15 -7.70 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588692271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.969 kcal (2) G-P(sol) polarization free energy of solvation -35.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds