Wall clock time and date at job start Tue Mar 31 2020 05:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.56734 * 2 1 4 4 C 1.50439 * 109.57056 * 239.64539 * 2 1 3 5 5 O 1.21280 * 118.48728 * 47.48797 * 4 2 1 6 6 N 1.33379 * 123.02316 * 227.46850 * 4 2 1 7 7 C 1.46498 * 117.70494 * 184.34066 * 6 4 2 8 8 C 1.45650 * 124.58755 * 4.31821 * 6 4 2 9 9 C 1.53465 * 110.74157 * 337.97647 * 8 6 4 10 10 N 1.47045 * 109.57053 * 120.23508 * 2 1 3 11 11 C 1.34787 * 121.34921 * 342.54129 * 10 2 1 12 12 O 1.21274 * 120.00012 * 354.49114 * 11 10 2 13 13 C 1.50700 * 119.99544 * 174.49622 * 11 10 2 14 14 C 1.53001 * 109.46811 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47134 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47410 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.47508 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00194 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00426 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99642 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00358 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47123 * 59.99855 * 21 19 17 23 23 H 1.48494 * 109.47250 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47181 * 300.00224 * 21 19 17 25 25 H 1.08997 * 109.47214 * 310.36783 * 1 2 3 26 26 H 1.08998 * 109.46924 * 70.37075 * 1 2 3 27 27 H 1.09000 * 109.46601 * 190.36465 * 1 2 3 28 28 H 1.09000 * 109.47394 * 359.97438 * 7 6 4 29 29 H 1.09000 * 109.47049 * 120.00440 * 7 6 4 30 30 H 1.09006 * 109.47157 * 239.99972 * 7 6 4 31 31 H 1.08999 * 109.21916 * 98.43188 * 8 6 4 32 32 H 1.09001 * 109.21644 * 217.76314 * 8 6 4 33 33 H 1.09000 * 109.85382 * 287.32153 * 9 8 6 34 34 H 1.09001 * 109.84133 * 166.50386 * 9 8 6 35 35 H 1.09000 * 109.47618 * 59.99689 * 13 11 10 36 36 H 1.09004 * 109.47295 * 299.99796 * 13 11 10 37 37 H 1.09000 * 109.46959 * 60.00052 * 14 13 11 38 38 H 1.08995 * 109.47070 * 299.99819 * 14 13 11 39 39 H 1.09000 * 109.47232 * 59.99855 * 15 14 13 40 40 H 1.09004 * 109.47359 * 300.00159 * 15 14 13 41 41 H 1.09000 * 109.47216 * 59.99632 * 16 15 14 42 42 H 1.09004 * 109.46816 * 300.00279 * 16 15 14 43 43 H 0.97002 * 120.00088 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0339 -0.7163 -1.2232 5 8 1.5490 -0.4357 -2.2988 6 7 2.9897 -1.6456 -1.1792 7 6 3.4603 -2.1994 -2.4512 8 6 3.5988 -2.1480 0.0448 9 6 3.4268 -1.1413 1.1903 10 7 2.0226 -0.6977 1.1970 11 6 1.2228 -0.9172 2.2596 12 8 0.1036 -0.4507 2.2828 13 6 1.7196 -1.7423 3.4187 14 6 0.6251 -1.8363 4.4837 15 6 1.1291 -2.6745 5.6603 16 6 0.0345 -2.7692 6.7250 17 6 0.5312 -3.5942 7.8841 18 1 1.5278 -4.0099 7.8633 19 6 -0.2867 -3.8184 8.9713 20 7 -1.5004 -3.3126 8.9965 21 14 0.3287 -4.8416 10.4078 22 1 1.5341 -4.2005 10.9919 23 1 -0.7337 -4.9334 11.4413 24 1 0.6748 -6.2052 9.9320 25 1 -0.3633 0.6656 0.7829 26 1 -0.3633 0.3452 -0.9679 27 1 -0.3632 -1.0109 0.1849 28 1 2.9182 -1.7324 -3.2735 29 1 4.5268 -2.0031 -2.5606 30 1 3.2855 -3.2753 -2.4659 31 1 3.1267 -3.0913 0.3195 32 1 4.6620 -2.3163 -0.1265 33 1 4.0823 -0.2849 1.0320 34 1 3.6666 -1.6180 2.1408 35 1 2.6039 -1.2711 3.8476 36 1 1.9743 -2.7430 3.0696 37 1 -0.2594 -2.3074 4.0550 38 1 0.3708 -0.8356 4.8327 39 1 2.0139 -2.2039 6.0890 40 1 1.3832 -3.6753 5.3110 41 1 -0.8500 -3.2400 6.2960 42 1 -0.2199 -1.7685 7.0744 43 1 -2.0759 -3.4706 9.7611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588692271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:34 Heat of formation + Delta-G solvation = -93.482835 kcal Electronic energy + Delta-G solvation = -22384.433468 eV Core-core repulsion = 19042.712539 eV Total energy + Delta-G solvation = -3341.720930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.13369 -40.46282 -37.69653 -36.74837 -36.03903 -34.68206 -33.03790 -31.22230 -30.17753 -28.13648 -27.41723 -25.48742 -24.41543 -23.79662 -21.76128 -20.96523 -19.43657 -18.61184 -18.39999 -18.07082 -16.98985 -16.88349 -16.69586 -16.61668 -16.44154 -15.71551 -15.14667 -14.88549 -14.50459 -14.26434 -14.18931 -13.71162 -13.58413 -13.48612 -13.37853 -13.26689 -13.20735 -12.88753 -12.77013 -12.66699 -12.43368 -12.34005 -12.09464 -12.04529 -11.44059 -11.32682 -11.29047 -11.06521 -10.52369 -10.30072 -9.89880 -9.70561 -8.16747 -6.28877 1.34499 1.41950 1.45736 1.53539 1.57294 1.65295 1.99094 2.43581 3.16182 3.27447 3.51229 3.77563 3.94665 4.00245 4.05341 4.16329 4.19267 4.31496 4.44773 4.58145 4.61025 4.66732 4.70761 4.72380 4.80982 4.86393 4.88071 4.94026 4.96446 5.08815 5.22783 5.29507 5.36228 5.39629 5.42527 5.60072 5.81923 5.91193 6.19723 6.27473 6.31537 6.90306 6.91647 7.14992 7.40937 8.95316 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034618 B = 0.002835 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.634751 B = 9873.964387 C =10405.987359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.137 3.863 3 H 0.116 0.884 4 C 0.508 3.492 5 O -0.583 6.583 6 N -0.603 5.603 7 C 0.065 3.935 8 C 0.091 3.909 9 C 0.085 3.915 10 N -0.619 5.619 11 C 0.517 3.483 12 O -0.567 6.567 13 C -0.125 4.125 14 C -0.096 4.096 15 C -0.094 4.094 16 C 0.018 3.982 17 C -0.541 4.541 18 H 0.068 0.932 19 C -0.007 4.007 20 N -0.939 5.939 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.138 0.862 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.039 0.961 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.062 0.938 41 H -0.018 1.018 42 H -0.017 1.017 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.101 2.644 -20.765 27.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.031 3.969 3 H 0.134 0.866 4 C 0.295 3.705 5 O -0.463 6.463 6 N -0.334 5.334 7 C -0.077 4.077 8 C -0.031 4.031 9 C -0.037 4.037 10 N -0.356 5.356 11 C 0.308 3.692 12 O -0.446 6.446 13 C -0.164 4.164 14 C -0.135 4.135 15 C -0.132 4.132 16 C -0.019 4.019 17 C -0.579 4.579 18 H 0.086 0.914 19 C -0.205 4.205 20 N -0.580 5.580 21 Si 0.792 3.208 22 H -0.188 1.188 23 H -0.213 1.213 24 H -0.189 1.189 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.147 0.853 33 H 0.121 0.879 34 H 0.156 0.844 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.000 1.000 42 H 0.002 0.998 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.124 3.022 -21.181 27.405 hybrid contribution -0.646 -0.295 0.748 1.031 sum 16.479 2.727 -20.433 26.391 Atomic orbital electron populations 1.21893 0.91715 1.02724 1.02115 1.21246 0.96848 0.97059 0.81779 0.86638 1.20452 0.79374 0.80132 0.90504 1.90695 1.58241 1.66336 1.31021 1.47286 1.37403 1.38918 1.09833 1.21944 1.00988 0.99448 0.85297 1.22211 1.01276 0.97352 0.82256 1.22653 0.79999 0.99517 1.01482 1.48450 1.13427 1.58767 1.14934 1.21301 0.84507 0.79827 0.83598 1.90723 1.22064 1.51629 1.80143 1.21744 1.00611 1.01683 0.92395 1.21255 0.97559 0.99611 0.95049 1.21433 0.98267 0.99216 0.94246 1.19058 0.94358 0.94565 0.93930 1.21753 1.00662 1.32273 1.03221 0.91363 1.26095 0.95011 0.97388 1.01959 1.70128 1.09203 1.46865 1.31788 0.85454 0.78003 0.79288 0.78021 1.18789 1.21320 1.18874 0.89942 0.92133 0.94106 0.91501 0.89096 0.90702 0.90455 0.85251 0.87926 0.84386 0.85571 0.86100 0.94189 0.93796 0.91728 0.91969 0.99968 0.99815 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 7.63 71.98 0.55 -2.86 16 2 C 0.14 2.90 3.67 44.06 0.16 3.06 16 3 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 4 C 0.51 11.11 7.09 87.79 0.62 11.74 16 5 O -0.58 -17.07 15.17 -3.03 -0.05 -17.12 16 6 N -0.60 -8.65 3.20 -850.41 -2.72 -11.37 16 7 C 0.07 0.73 10.43 127.77 1.33 2.07 16 8 C 0.09 0.58 6.60 86.70 0.57 1.16 16 9 C 0.08 0.60 6.47 86.39 0.56 1.16 16 10 N -0.62 -10.98 2.97 -798.29 -2.37 -13.35 16 11 C 0.52 12.67 7.39 87.66 0.65 13.32 16 12 O -0.57 -19.37 12.18 -3.01 -0.04 -19.40 16 13 C -0.13 -2.60 4.11 29.85 0.12 -2.48 16 14 C -0.10 -3.23 4.50 30.59 0.14 -3.10 16 15 C -0.09 -3.60 5.15 30.59 0.16 -3.44 16 16 C 0.02 0.97 4.97 29.84 0.15 1.11 16 17 C -0.54 -30.71 9.11 25.60 0.23 -30.47 16 18 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 19 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 20 N -0.94 -58.78 13.29 21.45 0.28 -58.49 16 21 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 25 H 0.08 2.45 6.38 -2.39 -0.02 2.43 16 26 H 0.06 1.62 7.56 -2.39 -0.02 1.60 16 27 H 0.04 1.24 7.39 -2.39 -0.02 1.22 16 28 H 0.07 1.13 6.59 -2.39 -0.02 1.12 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.13 -0.07 8.07 -2.39 -0.02 -0.09 16 33 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.14 0.34 6.05 -2.39 -0.01 0.32 16 35 H 0.13 1.82 7.59 -2.39 -0.02 1.80 16 36 H 0.12 1.86 8.08 -2.38 -0.02 1.84 16 37 H 0.04 1.51 8.10 -2.39 -0.02 1.49 16 38 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 41 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 42 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 43 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -81.71 343.49 3.82 -77.90 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 0.98 Total: 4.45 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 5.71 Total: -8.70 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -4.81 Total: -83.21 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.08 Total: -36.52 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -81.71 3.82 -77.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588692271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.588 kcal (2) G-P(sol) polarization free energy of solvation -81.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds