Wall clock time and date at job start Tue Mar 31 2020 05:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.56958 * 2 1 4 4 C 1.50405 * 109.47403 * 120.37622 * 2 1 3 5 5 O 1.21281 * 118.46020 * 287.30243 * 4 2 1 6 6 N 1.33379 * 123.05229 * 107.55027 * 4 2 1 7 7 C 1.46499 * 117.70682 * 184.04603 * 6 4 2 8 8 C 1.45652 * 124.58701 * 3.77087 * 6 4 2 9 9 C 1.52992 * 110.77047 * 338.37691 * 8 6 4 10 10 N 1.47052 * 109.56549 * 239.76601 * 2 1 3 11 11 C 1.34774 * 121.35406 * 102.77496 * 10 2 1 12 12 O 1.21279 * 119.99961 * 0.02562 * 11 10 2 13 13 C 1.50701 * 120.00141 * 180.02562 * 11 10 2 14 14 C 1.53005 * 109.47402 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47233 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47058 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47227 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00209 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00345 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99863 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00241 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47218 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47028 * 119.99751 * 21 19 17 24 24 H 1.48505 * 109.46874 * 239.99408 * 21 19 17 25 25 H 1.08996 * 109.47511 * 180.23643 * 1 2 3 26 26 H 1.08996 * 109.47160 * 300.23645 * 1 2 3 27 27 H 1.08997 * 109.47011 * 60.23283 * 1 2 3 28 28 H 1.09002 * 109.47391 * 269.74110 * 7 6 4 29 29 H 1.09001 * 109.46813 * 149.74166 * 7 6 4 30 30 H 1.09004 * 109.47041 * 29.74293 * 7 6 4 31 31 H 1.09002 * 109.21659 * 98.71202 * 8 6 4 32 32 H 1.08994 * 109.21494 * 218.04767 * 8 6 4 33 33 H 1.09000 * 109.71328 * 166.40378 * 9 8 6 34 34 H 1.08998 * 109.71967 * 287.05331 * 9 8 6 35 35 H 1.09001 * 109.47272 * 300.00316 * 13 11 10 36 36 H 1.08998 * 109.47130 * 59.99566 * 13 11 10 37 37 H 1.09007 * 109.46646 * 299.99917 * 14 13 11 38 38 H 1.08997 * 109.46862 * 59.99778 * 14 13 11 39 39 H 1.09001 * 109.47193 * 299.99877 * 15 14 13 40 40 H 1.08998 * 109.47378 * 59.99230 * 15 14 13 41 41 H 1.08993 * 109.47114 * 299.99825 * 16 15 14 42 42 H 1.09004 * 109.47170 * 60.00220 * 16 15 14 43 43 H 0.96994 * 119.99682 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0314 -0.7171 1.2233 5 8 1.9251 -0.1678 2.2994 6 7 2.5917 -1.9266 1.1791 7 6 2.9566 -2.5553 2.4510 8 6 2.8612 -2.6687 -0.0449 9 6 1.9754 -2.1696 -1.1881 10 7 2.0224 -0.6977 -1.1971 11 6 2.4971 -0.0177 -2.2596 12 8 2.5246 1.1946 -2.2406 13 6 2.9937 -0.7638 -3.4711 14 6 3.4745 0.2363 -4.5244 15 6 3.9781 -0.5212 -5.7547 16 6 4.4583 0.4790 -6.8081 17 6 4.9548 -0.2671 -8.0197 18 1 4.9300 -1.3467 -8.0368 19 6 5.4409 0.4284 -9.1064 20 7 5.4707 1.7431 -9.0858 21 14 6.0558 -0.4964 -10.6084 22 1 5.9154 -1.9572 -10.3820 23 1 5.2563 -0.0999 -11.7954 24 1 7.4849 -0.1671 -10.8417 25 1 -0.3634 -1.0276 0.0042 26 1 -0.3633 0.5175 0.8878 27 1 -0.3633 0.5102 -0.8920 28 1 3.9791 -2.2819 2.7114 29 1 2.8833 -3.6386 2.3551 30 1 2.2787 -2.2131 3.2331 31 1 3.9081 -2.5398 -0.3196 32 1 2.6636 -3.7269 0.1263 33 1 2.3478 -2.5554 -2.1371 34 1 0.9498 -2.5039 -1.0316 35 1 3.8201 -1.4140 -3.1840 36 1 2.1843 -1.3660 -3.8840 37 1 2.6483 0.8868 -4.8117 38 1 4.2840 0.8380 -4.1112 39 1 4.8041 -1.1719 -5.4677 40 1 3.1683 -1.1227 -6.1676 41 1 3.6320 1.1293 -7.0950 42 1 5.2680 1.0808 -6.3954 43 1 5.8123 2.2324 -9.8505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588692272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:37 Heat of formation + Delta-G solvation = -81.249551 kcal Electronic energy + Delta-G solvation = -22259.753138 eV Core-core repulsion = 18918.562683 eV Total energy + Delta-G solvation = -3341.190455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.27208 -39.45688 -36.91817 -35.55489 -34.92561 -32.81348 -31.93350 -30.07375 -29.32031 -27.47617 -25.78712 -24.40259 -23.93629 -22.33369 -20.21976 -19.92838 -18.31444 -17.76785 -17.48293 -16.62512 -16.22299 -16.05565 -15.71035 -15.33635 -14.52769 -14.43997 -14.38092 -14.09351 -13.51935 -13.32773 -13.04170 -12.80474 -12.61836 -12.48775 -12.45105 -12.23766 -12.03686 -11.76956 -11.66826 -11.60500 -11.02029 -10.58421 -10.50396 -10.45832 -10.43773 -9.86340 -9.64409 -9.26090 -9.24079 -8.99938 -8.97759 -8.32198 -5.96706 -3.99359 2.18974 2.34629 2.53496 2.69486 3.31940 3.39254 3.42760 3.93109 4.17048 4.41909 4.48106 4.55205 4.71812 4.75829 4.83225 4.90380 5.02112 5.09297 5.20809 5.25620 5.27727 5.33281 5.38805 5.42553 5.47273 5.72969 5.77513 5.82633 6.02497 6.08410 6.25236 6.50082 6.79812 6.92199 6.97027 7.07744 7.18461 7.69124 7.72702 7.88099 8.03482 8.05132 8.46052 9.08669 9.64506 11.14662 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035424 B = 0.002758 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.236846 B =10148.584905 C =10553.527283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.129 3.871 3 H 0.129 0.871 4 C 0.516 3.484 5 O -0.542 6.542 6 N -0.606 5.606 7 C 0.076 3.924 8 C 0.097 3.903 9 C 0.091 3.909 10 N -0.624 5.624 11 C 0.520 3.480 12 O -0.525 6.525 13 C -0.136 4.136 14 C -0.105 4.105 15 C -0.109 4.109 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.986 -12.794 21.222 26.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.023 3.977 3 H 0.147 0.853 4 C 0.303 3.697 5 O -0.418 6.418 6 N -0.339 5.339 7 C -0.066 4.066 8 C -0.027 4.027 9 C -0.032 4.032 10 N -0.362 5.362 11 C 0.310 3.690 12 O -0.399 6.399 13 C -0.176 4.176 14 C -0.143 4.143 15 C -0.147 4.147 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.211 1.211 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.960 -11.664 21.651 26.174 hybrid contribution 0.441 -0.651 -0.885 1.184 sum -8.519 -12.315 20.766 25.602 Atomic orbital electron populations 1.21993 0.92109 1.02812 1.03969 1.21285 0.96292 0.98783 0.81347 0.85289 1.20295 0.77238 0.81133 0.91043 1.90738 1.56758 1.64486 1.29851 1.47159 1.60979 1.17799 1.08001 1.21768 1.01392 0.97471 0.86001 1.21879 1.00549 0.96413 0.83898 1.22119 1.00912 0.80238 0.99962 1.48482 1.64661 1.06543 1.16482 1.21189 0.76003 0.88208 0.83610 1.90727 1.54212 1.14084 1.80870 1.21842 1.02111 1.00266 0.93393 1.21485 1.01406 0.96990 0.94385 1.21641 0.99185 0.99118 0.94755 1.19099 0.96332 0.94026 0.92331 1.21311 1.41123 0.93034 1.00357 0.92706 1.25048 0.96046 0.94835 0.98674 1.69985 1.46852 1.05914 1.30679 0.86560 0.78486 0.80020 0.83057 1.19779 1.21047 1.21057 0.92151 0.90397 0.90580 0.92438 0.91010 0.90240 0.90783 0.89075 0.86918 0.89997 0.88999 0.88874 0.91689 0.91732 0.93468 0.93442 0.96571 0.96589 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.37 37.16 0.35 -0.99 16 2 C 0.13 1.41 3.06 -68.93 -0.21 1.20 16 3 H 0.13 1.70 7.23 -51.93 -0.38 1.32 16 4 C 0.52 5.86 6.83 -11.75 -0.08 5.78 16 5 O -0.54 -7.89 16.24 5.56 0.09 -7.80 16 6 N -0.61 -5.08 3.20 -182.79 -0.59 -5.67 16 7 C 0.08 0.51 10.19 59.85 0.61 1.12 16 8 C 0.10 0.52 6.58 -4.50 -0.03 0.49 16 9 C 0.09 0.53 6.31 -3.63 -0.02 0.51 16 10 N -0.62 -6.26 2.62 -166.57 -0.44 -6.69 16 11 C 0.52 6.88 7.72 -10.99 -0.08 6.80 16 12 O -0.52 -9.26 15.54 5.56 0.09 -9.18 16 13 C -0.14 -1.64 4.07 -27.88 -0.11 -1.75 16 14 C -0.10 -1.78 4.50 -26.73 -0.12 -1.90 16 15 C -0.11 -2.16 5.15 -26.74 -0.14 -2.30 16 16 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 17 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.27 7.80 -51.93 -0.41 -0.13 16 30 H 0.08 0.64 7.22 -51.93 -0.38 0.26 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.23 7.84 -51.93 -0.41 -0.18 16 33 H 0.11 0.47 6.03 -51.93 -0.31 0.16 16 34 H 0.08 0.37 7.52 -51.93 -0.39 -0.02 16 35 H 0.09 0.91 7.87 -51.93 -0.41 0.50 16 36 H 0.09 0.91 7.83 -51.93 -0.41 0.51 16 37 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -36.04 349.35 -7.49 -43.53 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -7.24 Total: -5.23 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -0.39 Total: -4.27 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -0.29 Total: -38.96 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.18 Total: -16.97 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.04 -7.49 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588692272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.719 kcal (2) G-P(sol) polarization free energy of solvation -36.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds