Wall clock time and date at job start Tue Mar 31 2020 05:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.56958 * 2 1 4 4 C 1.50405 * 109.47403 * 120.37622 * 2 1 3 5 5 O 1.21281 * 118.46020 * 287.30243 * 4 2 1 6 6 N 1.33379 * 123.05229 * 107.55027 * 4 2 1 7 7 C 1.46499 * 117.70682 * 184.04603 * 6 4 2 8 8 C 1.45652 * 124.58701 * 3.77087 * 6 4 2 9 9 C 1.52992 * 110.77047 * 338.37691 * 8 6 4 10 10 N 1.47052 * 109.56549 * 239.76601 * 2 1 3 11 11 C 1.34774 * 121.35406 * 102.77496 * 10 2 1 12 12 O 1.21279 * 119.99961 * 0.02562 * 11 10 2 13 13 C 1.50701 * 120.00141 * 180.02562 * 11 10 2 14 14 C 1.53005 * 109.47402 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47233 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47058 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47227 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00209 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00345 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99863 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00241 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47218 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47028 * 119.99751 * 21 19 17 24 24 H 1.48505 * 109.46874 * 239.99408 * 21 19 17 25 25 H 1.08996 * 109.47511 * 180.23643 * 1 2 3 26 26 H 1.08996 * 109.47160 * 300.23645 * 1 2 3 27 27 H 1.08997 * 109.47011 * 60.23283 * 1 2 3 28 28 H 1.09002 * 109.47391 * 269.74110 * 7 6 4 29 29 H 1.09001 * 109.46813 * 149.74166 * 7 6 4 30 30 H 1.09004 * 109.47041 * 29.74293 * 7 6 4 31 31 H 1.09002 * 109.21659 * 98.71202 * 8 6 4 32 32 H 1.08994 * 109.21494 * 218.04767 * 8 6 4 33 33 H 1.09000 * 109.71328 * 166.40378 * 9 8 6 34 34 H 1.08998 * 109.71967 * 287.05331 * 9 8 6 35 35 H 1.09001 * 109.47272 * 300.00316 * 13 11 10 36 36 H 1.08998 * 109.47130 * 59.99566 * 13 11 10 37 37 H 1.09007 * 109.46646 * 299.99917 * 14 13 11 38 38 H 1.08997 * 109.46862 * 59.99778 * 14 13 11 39 39 H 1.09001 * 109.47193 * 299.99877 * 15 14 13 40 40 H 1.08998 * 109.47378 * 59.99230 * 15 14 13 41 41 H 1.08993 * 109.47114 * 299.99825 * 16 15 14 42 42 H 1.09004 * 109.47170 * 60.00220 * 16 15 14 43 43 H 0.96994 * 119.99682 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0314 -0.7171 1.2233 5 8 1.9251 -0.1678 2.2994 6 7 2.5917 -1.9266 1.1791 7 6 2.9566 -2.5553 2.4510 8 6 2.8612 -2.6687 -0.0449 9 6 1.9754 -2.1696 -1.1881 10 7 2.0224 -0.6977 -1.1971 11 6 2.4971 -0.0177 -2.2596 12 8 2.5246 1.1946 -2.2406 13 6 2.9937 -0.7638 -3.4711 14 6 3.4745 0.2363 -4.5244 15 6 3.9781 -0.5212 -5.7547 16 6 4.4583 0.4790 -6.8081 17 6 4.9548 -0.2671 -8.0197 18 1 4.9300 -1.3467 -8.0368 19 6 5.4409 0.4284 -9.1064 20 7 5.4707 1.7431 -9.0858 21 14 6.0558 -0.4964 -10.6084 22 1 5.9154 -1.9572 -10.3820 23 1 5.2563 -0.0999 -11.7954 24 1 7.4849 -0.1671 -10.8417 25 1 -0.3634 -1.0276 0.0042 26 1 -0.3633 0.5175 0.8878 27 1 -0.3633 0.5102 -0.8920 28 1 3.9791 -2.2819 2.7114 29 1 2.8833 -3.6386 2.3551 30 1 2.2787 -2.2131 3.2331 31 1 3.9081 -2.5398 -0.3196 32 1 2.6636 -3.7269 0.1263 33 1 2.3478 -2.5554 -2.1371 34 1 0.9498 -2.5039 -1.0316 35 1 3.8201 -1.4140 -3.1840 36 1 2.1843 -1.3660 -3.8840 37 1 2.6483 0.8868 -4.8117 38 1 4.2840 0.8380 -4.1112 39 1 4.8041 -1.1719 -5.4677 40 1 3.1683 -1.1227 -6.1676 41 1 3.6320 1.1293 -7.0950 42 1 5.2680 1.0808 -6.3954 43 1 5.8123 2.2324 -9.8505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588692272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:37 Heat of formation + Delta-G solvation = -105.860849 kcal Electronic energy + Delta-G solvation = -22260.820364 eV Core-core repulsion = 18918.562683 eV Total energy + Delta-G solvation = -3342.257681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.08136 -40.44513 -37.76483 -36.69839 -36.19176 -34.64612 -32.96720 -31.27231 -30.34904 -28.14985 -27.44539 -25.11639 -24.87760 -23.81958 -21.81024 -20.96735 -19.03204 -18.56418 -18.48895 -18.24264 -17.36191 -16.92728 -16.74089 -16.51916 -16.12934 -15.65623 -15.21418 -14.95413 -14.55788 -14.47363 -13.91618 -13.85772 -13.63999 -13.50358 -13.44532 -13.20395 -13.11493 -13.06816 -12.83699 -12.61372 -12.44225 -12.26814 -12.12313 -12.10548 -11.39274 -11.34056 -11.30340 -11.10900 -10.74010 -10.54014 -9.94863 -9.76304 -8.17067 -6.29050 1.33620 1.42215 1.42928 1.53065 1.56322 1.63934 1.94673 2.43437 3.16132 3.26164 3.51352 3.78072 3.95014 3.99654 4.02616 4.13927 4.19044 4.31676 4.41616 4.53226 4.58649 4.63798 4.68885 4.71523 4.73554 4.84528 4.87886 4.91311 4.91934 5.07274 5.17515 5.21328 5.34797 5.37750 5.41547 5.60022 5.81470 5.91083 6.17419 6.27013 6.28485 6.89250 6.90572 7.07924 7.40908 8.95467 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035424 B = 0.002758 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.236846 B =10148.584905 C =10553.527283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.127 3.873 3 H 0.095 0.905 4 C 0.512 3.488 5 O -0.586 6.586 6 N -0.601 5.601 7 C 0.073 3.927 8 C 0.090 3.910 9 C 0.082 3.918 10 N -0.615 5.615 11 C 0.517 3.483 12 O -0.584 6.584 13 C -0.123 4.123 14 C -0.098 4.098 15 C -0.093 4.093 16 C 0.017 3.983 17 C -0.538 4.538 18 H 0.069 0.931 19 C -0.009 4.009 20 N -0.940 5.940 21 Si 0.969 3.031 22 H -0.254 1.254 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.111 0.889 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.065 0.935 41 H -0.017 1.017 42 H -0.018 1.018 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.187 -17.339 20.910 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.020 3.980 3 H 0.113 0.887 4 C 0.299 3.701 5 O -0.466 6.466 6 N -0.332 5.332 7 C -0.069 4.069 8 C -0.032 4.032 9 C -0.040 4.040 10 N -0.350 5.350 11 C 0.308 3.692 12 O -0.463 6.463 13 C -0.162 4.162 14 C -0.136 4.136 15 C -0.131 4.131 16 C -0.021 4.021 17 C -0.576 4.576 18 H 0.087 0.913 19 C -0.206 4.206 20 N -0.581 5.581 21 Si 0.793 3.207 22 H -0.178 1.178 23 H -0.206 1.206 24 H -0.207 1.207 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.129 0.871 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.001 0.999 42 H 0.000 1.000 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.163 -16.308 21.352 28.387 hybrid contribution 0.520 0.757 -0.747 1.184 sum -8.642 -15.551 20.605 27.223 Atomic orbital electron populations 1.21919 0.90520 1.04109 1.03452 1.21166 0.97527 0.97367 0.81902 0.88724 1.20304 0.77512 0.82035 0.90259 1.90714 1.58890 1.65853 1.31143 1.47316 1.59182 1.16848 1.09896 1.21907 1.00573 0.99527 0.84852 1.22204 1.00627 0.98149 0.82228 1.22592 1.02742 0.76985 1.01641 1.48467 1.63059 1.08524 1.14967 1.21426 0.75638 0.87551 0.84576 1.90716 1.56862 1.16703 1.82060 1.21733 1.04337 0.98950 0.91185 1.21274 0.99789 0.97598 0.94988 1.21427 1.00195 0.97715 0.93743 1.19076 0.94137 0.94779 0.94060 1.21802 1.40817 0.93877 1.01073 0.91289 1.26107 0.96238 0.95716 1.02509 1.70147 1.48020 1.07989 1.31912 0.85340 0.77669 0.79345 0.78323 1.17787 1.20642 1.20692 0.89840 0.90848 0.91169 0.92798 0.87090 0.92045 0.90464 0.84828 0.84244 0.87802 0.85644 0.85325 0.93989 0.94250 0.91765 0.91642 0.99850 0.99966 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.37 71.98 0.67 -1.78 16 2 C 0.13 2.80 3.06 44.05 0.13 2.94 16 3 H 0.09 2.74 7.23 -2.39 -0.02 2.72 16 4 C 0.51 11.44 6.83 87.78 0.60 12.03 16 5 O -0.59 -17.65 16.24 -3.03 -0.05 -17.70 16 6 N -0.60 -8.60 3.20 -851.38 -2.73 -11.33 16 7 C 0.07 0.81 10.19 127.77 1.30 2.12 16 8 C 0.09 0.55 6.58 86.54 0.57 1.12 16 9 C 0.08 0.57 6.31 86.23 0.54 1.12 16 10 N -0.61 -11.19 2.62 -799.29 -2.10 -13.29 16 11 C 0.52 13.25 7.72 87.66 0.68 13.93 16 12 O -0.58 -21.65 15.54 -3.03 -0.05 -21.70 16 13 C -0.12 -2.59 4.07 29.85 0.12 -2.47 16 14 C -0.10 -3.34 4.50 30.59 0.14 -3.21 16 15 C -0.09 -3.57 5.15 30.59 0.16 -3.42 16 16 C 0.02 0.89 4.97 29.85 0.15 1.04 16 17 C -0.54 -30.49 9.11 25.60 0.23 -30.25 16 18 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 19 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 20 N -0.94 -58.89 13.29 21.45 0.28 -58.61 16 21 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 22 H -0.25 -10.71 7.11 99.48 0.71 -10.01 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H 0.08 1.04 7.51 -2.39 -0.02 1.02 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.11 0.35 7.80 -2.39 -0.02 0.33 16 30 H 0.06 0.93 7.22 -2.38 -0.02 0.92 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.13 -0.20 7.84 -2.39 -0.02 -0.22 16 33 H 0.14 0.29 6.03 -2.39 -0.01 0.28 16 34 H 0.10 0.38 7.52 -2.39 -0.02 0.36 16 35 H 0.13 1.87 7.87 -2.39 -0.02 1.85 16 36 H 0.13 1.87 7.83 -2.39 -0.02 1.85 16 37 H 0.04 1.59 8.10 -2.38 -0.02 1.57 16 38 H 0.04 1.51 8.10 -2.39 -0.02 1.49 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 41 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 43 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -84.74 349.35 4.13 -80.61 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: 0.97 Total: 2.77 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.76 Total: -6.88 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -4.54 Total: -83.23 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.10 Total: -39.40 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -84.74 4.13 -80.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588692272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.252 kcal (2) G-P(sol) polarization free energy of solvation -84.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds