Wall clock time and date at job start Tue Mar 31 2020 05:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46814 * 2 1 4 4 C 1.46760 * 124.34918 * 269.94736 * 3 2 1 5 5 C 1.54832 * 105.49381 * 197.06035 * 4 3 2 6 6 C 1.54633 * 101.60497 * 334.56967 * 5 4 3 7 7 H 1.09004 * 110.48586 * 143.56620 * 6 5 4 8 8 N 1.46498 * 110.48463 * 266.07920 * 6 5 4 9 9 C 1.34777 * 119.99828 * 202.88020 * 8 6 5 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 6 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 6 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47353 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47600 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47646 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99463 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00445 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00126 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99943 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47483 * 89.99798 * 19 17 15 21 21 H 1.48499 * 109.47134 * 210.00313 * 19 17 15 22 22 H 1.48507 * 109.46904 * 330.00135 * 19 17 15 23 23 C 1.34419 * 124.34844 * 89.97854 * 3 2 1 24 24 O 1.21282 * 124.94231 * 359.60384 * 23 3 2 25 25 H 1.09000 * 109.47197 * 300.00033 * 1 2 3 26 26 H 1.08996 * 109.47299 * 60.00031 * 1 2 3 27 27 H 1.09005 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47197 * 239.99967 * 2 1 3 29 29 H 1.08996 * 109.47299 * 119.99969 * 2 1 3 30 30 H 1.09000 * 110.24507 * 316.03999 * 4 3 2 31 31 H 1.09004 * 110.24283 * 77.95571 * 4 3 2 32 32 H 1.08997 * 111.08113 * 216.49035 * 5 4 3 33 33 H 1.09005 * 111.01291 * 92.61854 * 5 4 3 34 34 H 0.97001 * 120.00384 * 23.16467 * 8 6 5 35 35 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 36 36 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 37 37 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 38 38 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 39 39 H 1.08999 * 109.47616 * 300.00389 * 13 12 11 40 40 H 1.09003 * 109.47280 * 60.00024 * 13 12 11 41 41 H 1.08998 * 109.47382 * 300.00476 * 14 13 12 42 42 H 1.09005 * 109.46800 * 60.00677 * 14 13 12 43 43 H 0.97005 * 120.00032 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2953 2.1616 -1.2117 5 6 3.1779 3.3462 -0.7479 6 6 2.7695 3.4754 0.7379 7 1 3.6311 3.7467 1.3481 8 7 1.7013 4.4660 0.8918 9 6 1.5102 5.0718 2.0804 10 8 2.2259 4.8007 3.0213 11 6 0.4073 6.0863 2.2405 12 6 0.4079 6.6182 3.6750 13 6 -0.7114 7.6486 3.8374 14 6 -0.7105 8.1810 5.2717 15 6 -1.8133 9.1955 5.4318 16 1 -2.4509 9.4366 4.5941 17 6 -2.0078 9.8164 6.6473 18 7 -2.9706 10.7013 6.7871 19 14 -0.9037 9.4008 8.0956 20 1 0.2706 10.3099 8.0998 21 1 -1.6632 9.5674 9.3608 22 1 -0.4407 7.9947 7.9776 23 6 2.2706 2.0965 1.1098 24 8 2.1208 1.6946 2.2442 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.8336 1.5524 -1.9378 31 1 1.3649 2.5294 -1.6444 32 1 2.9359 4.2548 -1.2993 33 1 4.2367 3.1050 -0.8419 34 1 1.1288 4.6828 0.1394 35 1 0.5694 6.9116 1.5473 36 1 -0.5526 5.6160 2.0273 37 1 0.2460 5.7931 4.3686 38 1 1.3680 7.0887 3.8877 39 1 -0.5492 8.4737 3.1438 40 1 -1.6716 7.1786 3.6245 41 1 -0.8725 7.3562 5.9656 42 1 0.2497 8.6512 5.4840 43 1 -3.1076 11.1380 7.6424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588731061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:48 Heat of formation + Delta-G solvation = -89.436931 kcal Electronic energy + Delta-G solvation = -21864.651084 eV Core-core repulsion = 18523.105598 eV Total energy + Delta-G solvation = -3341.545486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.12579 -39.29279 -36.80422 -35.42998 -34.87582 -32.95408 -32.47932 -30.28370 -29.44216 -27.61143 -25.70455 -24.02282 -22.58320 -21.86008 -20.42393 -19.98847 -19.71526 -17.45944 -17.17975 -16.67687 -16.53322 -16.04286 -15.54934 -15.28303 -14.63520 -14.18386 -14.07224 -13.98154 -13.78972 -13.70650 -13.27995 -12.93377 -12.61805 -12.37806 -12.31544 -12.20902 -11.94527 -11.80500 -11.71111 -11.48291 -11.07985 -10.70195 -10.56763 -10.49485 -9.95613 -9.78433 -9.60818 -9.39951 -9.17991 -9.11302 -9.08328 -8.46181 -5.97639 -3.94919 2.08719 2.50715 2.72020 3.17924 3.38526 3.45460 3.52592 3.86098 3.94397 4.28729 4.46360 4.53473 4.61705 4.78108 4.79238 4.90852 4.97670 5.17038 5.22780 5.24954 5.27471 5.32110 5.37430 5.38304 5.47019 5.77610 5.79901 6.06655 6.10518 6.16560 6.19032 6.45158 6.71153 6.72418 6.86848 7.02966 7.28109 7.42242 7.55106 7.88059 7.88413 8.19052 8.61392 9.07306 9.66023 11.15860 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030383 B = 0.002698 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.359965 B =10375.429156 C =10479.121547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.622 5.622 4 C 0.101 3.899 5 C -0.140 4.140 6 C 0.115 3.885 7 H 0.120 0.880 8 N -0.723 5.723 9 C 0.512 3.488 10 O -0.517 6.517 11 C -0.136 4.136 12 C -0.107 4.107 13 C -0.102 4.102 14 C -0.016 4.016 15 C -0.519 4.519 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.907 5.907 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.264 1.264 23 C 0.504 3.496 24 O -0.505 6.505 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.403 0.597 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.016 0.984 42 H 0.011 0.989 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.959 -20.218 -23.647 33.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.359 5.359 4 C -0.022 4.022 5 C -0.178 4.178 6 C 0.006 3.994 7 H 0.138 0.862 8 N -0.379 5.379 9 C 0.299 3.701 10 O -0.391 6.391 11 C -0.175 4.175 12 C -0.145 4.145 13 C -0.140 4.140 14 C -0.053 4.053 15 C -0.557 4.557 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.188 1.188 23 C 0.288 3.712 24 O -0.377 6.377 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.238 0.762 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.299 -20.593 -22.165 32.659 hybrid contribution 0.125 -0.095 0.273 0.315 sum 12.423 -20.689 -21.892 32.582 Atomic orbital electron populations 1.22161 0.95631 1.02468 1.02594 1.21352 0.94528 0.80972 1.03094 1.48376 1.66416 1.13926 1.07190 1.22164 0.99528 0.92902 0.87609 1.22995 1.01338 0.99334 0.94169 1.21528 0.92982 0.86964 0.97952 0.86174 1.45893 1.35598 1.42177 1.14272 1.21210 0.85662 0.81537 0.81678 1.90750 1.46702 1.62960 1.38664 1.21762 0.96796 0.97337 1.01655 1.21497 1.00628 0.99560 0.92843 1.21470 0.96259 0.96503 0.99719 1.19581 0.96948 0.96282 0.92524 1.21186 1.14972 1.21512 0.97989 0.91119 1.25038 0.95157 0.94665 0.98758 1.69923 1.31838 1.27755 1.25100 0.86776 0.80831 0.79714 0.82010 1.20314 1.21475 1.18845 1.21356 0.77487 0.87723 0.84592 1.90776 1.51255 1.74629 1.21052 0.92100 0.92424 0.91337 0.90355 0.90022 0.89993 0.90956 0.88099 0.88405 0.76219 0.88819 0.89001 0.91714 0.91713 0.92856 0.92865 0.96589 0.97032 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.24 37.16 0.38 -0.76 16 2 C 0.12 0.83 6.65 -4.04 -0.03 0.80 16 3 N -0.62 -4.91 2.93 -172.19 -0.50 -5.41 16 4 C 0.10 0.39 7.36 -2.93 -0.02 0.37 16 5 C -0.14 -0.56 6.80 -24.91 -0.17 -0.73 16 6 C 0.11 1.06 3.24 -67.94 -0.22 0.84 16 7 H 0.12 1.33 7.61 -51.93 -0.40 0.94 16 8 N -0.72 -6.86 5.11 -53.81 -0.28 -7.13 16 9 C 0.51 7.11 7.83 -10.98 -0.09 7.03 16 10 O -0.52 -9.71 15.66 5.55 0.09 -9.62 16 11 C -0.14 -1.75 5.70 -27.89 -0.16 -1.91 16 12 C -0.11 -1.87 4.50 -26.74 -0.12 -1.99 16 13 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 14 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 15 C -0.52 -15.30 9.66 -34.44 -0.33 -15.63 16 16 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 17 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.91 -28.74 13.96 55.43 0.77 -27.96 16 19 Si 0.88 22.77 27.47 -169.99 -4.67 18.10 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.26 -6.68 6.54 56.52 0.37 -6.31 16 23 C 0.50 6.04 7.66 -10.86 -0.08 5.96 16 24 O -0.51 -8.81 17.60 5.56 0.10 -8.71 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.68 7.93 -51.93 -0.41 0.27 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.10 0.22 8.05 -51.93 -0.42 -0.20 16 33 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.40 2.38 8.60 -40.82 -0.35 2.03 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.06 1.17 8.10 -51.92 -0.42 0.75 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 42 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -38.98 356.81 -7.72 -46.70 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -7.42 Total: -4.47 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -1.19 Total: -6.87 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.01 Total: -40.51 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.18 Total: -18.33 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.67 Total: 18.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.98 -7.72 -46.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588731061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.733 kcal (2) G-P(sol) polarization free energy of solvation -38.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds