Wall clock time and date at job start Tue Mar 31 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47304 * 2 1 4 4 C 1.34774 * 120.00240 * 89.99722 * 3 2 1 5 5 O 1.21279 * 119.99931 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.99956 * 0.02562 * 4 3 2 7 7 C 1.52992 * 109.47257 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47465 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.47535 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.46997 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99717 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.46499 * 119.99794 * 269.99974 * 3 2 1 19 19 H 1.09007 * 110.43694 * 0.70334 * 18 3 2 20 20 C 1.54623 * 110.48869 * 238.15758 * 18 3 2 21 21 C 1.54689 * 101.67027 * 216.60691 * 20 18 3 22 22 N 1.46761 * 105.53646 * 25.25961 * 21 20 18 23 23 C 1.34421 * 111.29653 * 343.07585 * 22 21 20 24 24 O 1.21281 * 124.93789 * 180.37526 * 23 22 21 25 25 H 1.08996 * 109.47306 * 300.00158 * 1 2 3 26 26 H 1.09001 * 109.46783 * 60.00151 * 1 2 3 27 27 H 1.08998 * 109.46893 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47306 * 239.99842 * 2 1 3 29 29 H 1.08999 * 109.47510 * 119.99742 * 2 1 3 30 30 H 1.08997 * 109.47392 * 59.99564 * 6 4 3 31 31 H 1.09004 * 109.46932 * 300.00225 * 6 4 3 32 32 H 1.09005 * 109.47124 * 59.99773 * 7 6 4 33 33 H 1.09004 * 109.47330 * 299.99977 * 7 6 4 34 34 H 1.09005 * 109.46889 * 59.99930 * 8 7 6 35 35 H 1.09002 * 109.47401 * 300.00018 * 8 7 6 36 36 H 1.09005 * 109.46767 * 60.00250 * 9 8 7 37 37 H 1.09002 * 109.47113 * 300.00590 * 9 8 7 38 38 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 39 39 H 1.09001 * 110.96646 * 334.64305 * 20 18 3 40 40 H 1.09000 * 110.97388 * 98.40737 * 20 18 3 41 41 H 1.09003 * 110.13718 * 266.27748 * 21 20 18 42 42 H 1.09003 * 110.36770 * 144.35789 * 21 20 18 43 43 H 0.96995 * 124.35088 * 163.06090 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6469 3.1602 1.1671 6 6 1.9923 1.3061 2.4723 7 6 2.3230 2.2437 3.6351 8 6 2.0679 1.5226 4.9602 9 6 2.3991 2.4600 6.1231 10 6 2.1472 1.7499 7.4282 11 1 1.7873 0.7316 7.4282 12 6 2.3763 2.4002 8.6223 13 7 2.1570 1.7803 9.7612 14 14 2.9982 4.1616 8.6221 15 1 4.4832 4.1623 8.6228 16 1 2.5033 4.8612 7.4093 17 1 2.5023 4.8616 9.8344 18 6 2.2626 2.0718 -1.2687 19 1 2.0193 1.4214 -2.1090 20 6 3.7334 2.5407 -1.3554 21 6 3.5874 3.8952 -2.0881 22 7 2.2250 4.3556 -1.7954 23 6 1.4576 3.3507 -1.3389 24 8 0.2900 3.4546 -1.0280 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.6227 0.4188 2.5299 31 1 0.9444 1.0115 2.5302 32 1 1.6921 3.1308 3.5773 33 1 3.3707 2.5387 3.5775 34 1 2.6984 0.6353 5.0182 35 1 1.0200 1.2280 5.0177 36 1 1.7688 3.3475 6.0652 37 1 3.4471 2.7543 6.0654 38 1 2.3185 2.2376 10.6012 39 1 4.1578 2.6793 -0.3610 40 1 4.3320 1.8415 -1.9394 41 1 3.7164 3.7569 -3.1616 42 1 4.3170 4.6115 -1.7102 43 1 1.9178 5.2677 -1.9156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588731456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:56 Heat of formation + Delta-G solvation = -84.786527 kcal Electronic energy + Delta-G solvation = -22659.995992 eV Core-core repulsion = 19318.652163 eV Total energy + Delta-G solvation = -3341.343829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18121 -39.13455 -36.53256 -36.02467 -35.02933 -32.62582 -31.71691 -30.24802 -29.60559 -27.50806 -25.70314 -23.62601 -22.66255 -21.98097 -20.87796 -19.99577 -18.73534 -17.61418 -17.28974 -16.71923 -16.40319 -16.07091 -15.58929 -14.66393 -14.47918 -14.15453 -14.09867 -13.99489 -13.72345 -13.54185 -13.01383 -12.93259 -12.67031 -12.59117 -12.19634 -12.05378 -11.87201 -11.69360 -11.61070 -11.35237 -11.03813 -10.69065 -10.49118 -10.26649 -9.90497 -9.77178 -9.61859 -9.41260 -9.28175 -9.09410 -8.84218 -8.47239 -5.98546 -3.95754 2.19876 2.62456 2.87425 3.19102 3.36699 3.43724 3.50390 4.06397 4.17173 4.40197 4.52090 4.62470 4.65860 4.71736 4.95768 4.98309 5.12762 5.19149 5.24581 5.33845 5.36890 5.43091 5.47200 5.61858 5.71692 5.78502 6.05033 6.09421 6.16090 6.26462 6.44368 6.57005 6.71452 6.79587 6.84625 7.01711 7.17456 7.40889 7.53843 7.87107 8.05659 8.13537 8.60692 9.06638 9.65001 11.15023 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023590 B = 0.003464 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.676589 B = 8081.048611 C = 8717.884336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 N -0.604 5.604 4 C 0.517 3.483 5 O -0.527 6.527 6 C -0.136 4.136 7 C -0.106 4.106 8 C -0.102 4.102 9 C -0.015 4.015 10 C -0.519 4.519 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.906 5.906 14 Si 0.879 3.121 15 H -0.277 1.277 16 H -0.265 1.265 17 H -0.288 1.288 18 C 0.116 3.884 19 H 0.121 0.879 20 C -0.145 4.145 21 C 0.108 3.892 22 N -0.726 5.726 23 C 0.520 3.480 24 O -0.524 6.524 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.015 0.985 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 -2.421 -29.332 29.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.016 4.016 3 N -0.339 5.339 4 C 0.307 3.693 5 O -0.402 6.402 6 C -0.176 4.176 7 C -0.144 4.144 8 C -0.140 4.140 9 C -0.053 4.053 10 C -0.557 4.557 11 H 0.089 0.911 12 C -0.136 4.136 13 N -0.546 5.546 14 Si 0.707 3.293 15 H -0.203 1.203 16 H -0.189 1.189 17 H -0.214 1.214 18 C 0.008 3.992 19 H 0.138 0.862 20 C -0.184 4.184 21 C -0.017 4.017 22 N -0.382 5.382 23 C 0.304 3.696 24 O -0.399 6.399 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.731 -1.858 -28.938 29.126 hybrid contribution 0.199 1.248 0.012 1.264 sum 2.930 -0.610 -28.925 29.080 Atomic orbital electron populations 1.22225 0.95403 1.02182 1.03368 1.21677 0.94995 0.81371 1.03595 1.47927 1.67207 1.14490 1.04303 1.21125 0.76109 0.86720 0.85384 1.90685 1.44695 1.17667 1.87182 1.21830 1.03798 1.00354 0.91625 1.21486 1.02111 0.97837 0.92927 1.21471 1.00705 0.98853 0.92926 1.19574 0.96028 0.95568 0.94089 1.21191 1.44286 1.01170 0.89018 0.91089 1.25042 0.95071 0.97942 0.95554 1.69924 1.49799 1.37462 0.97389 0.86777 0.79345 0.85546 0.77658 1.20320 1.18927 1.21446 1.21612 0.95426 0.93506 0.88631 0.86151 1.23069 0.95536 0.96144 1.03604 1.22003 0.83900 0.96399 0.99387 1.45978 1.12755 1.12094 1.67364 1.20896 0.86459 0.86731 0.75535 1.90744 1.15777 1.84749 1.48582 0.91904 0.92111 0.91401 0.90293 0.89394 0.88943 0.88875 0.91867 0.91861 0.92872 0.92834 0.96648 0.97092 0.92835 0.88214 0.89099 0.91113 0.90070 0.75097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.11 0.79 5.91 -4.04 -0.02 0.76 16 3 N -0.60 -6.41 2.50 -166.12 -0.42 -6.83 16 4 C 0.52 7.25 6.91 -10.99 -0.08 7.17 16 5 O -0.53 -9.08 13.29 5.56 0.07 -9.00 16 6 C -0.14 -1.83 4.25 -27.89 -0.12 -1.95 16 7 C -0.11 -1.84 4.50 -26.74 -0.12 -1.96 16 8 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 11 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 12 C 0.06 1.94 5.47 -17.82 -0.10 1.85 16 13 N -0.91 -28.66 13.96 55.43 0.77 -27.89 16 14 Si 0.88 22.64 27.47 -169.99 -4.67 17.97 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 16 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 18 C 0.12 1.09 3.41 -67.94 -0.23 0.86 16 19 H 0.12 0.77 7.86 -51.93 -0.41 0.36 16 20 C -0.14 -1.08 6.43 -24.99 -0.16 -1.25 16 21 C 0.11 0.71 7.79 -3.01 -0.02 0.68 16 22 N -0.73 -7.06 6.24 -59.09 -0.37 -7.43 16 23 C 0.52 6.66 6.53 -10.86 -0.07 6.59 16 24 O -0.52 -8.98 18.02 5.56 0.10 -8.88 16 25 H 0.06 0.65 7.22 -51.93 -0.38 0.27 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.38 7.95 -51.93 -0.41 -0.03 16 29 H 0.09 0.58 6.44 -51.93 -0.33 0.25 16 30 H 0.09 1.03 7.40 -51.93 -0.38 0.64 16 31 H 0.09 1.17 7.19 -51.93 -0.37 0.80 16 32 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 37 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 38 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 39 H 0.10 1.04 6.22 -51.93 -0.32 0.71 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.41 3.54 8.96 -40.82 -0.37 3.18 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -37.59 346.03 -7.55 -45.14 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.13 Total: -1.69 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -1.13 Total: -6.60 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.01 Total: -42.14 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.17 Total: -17.88 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.59 -7.55 -45.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588731456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.647 kcal (2) G-P(sol) polarization free energy of solvation -37.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds