Wall clock time and date at job start Tue Mar 31 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47393 * 2 1 4 4 C 1.46767 * 124.34891 * 90.00006 * 3 2 1 5 5 C 1.54475 * 105.47233 * 163.00630 * 4 3 2 6 6 H 1.08999 * 110.96938 * 267.25819 * 5 4 3 7 7 N 1.46504 * 110.96912 * 143.53752 * 5 4 3 8 8 C 1.34774 * 120.00240 * 154.99783 * 7 5 4 9 9 O 1.21283 * 119.99643 * 359.97438 * 8 7 5 10 10 C 1.50694 * 119.99993 * 179.97438 * 8 7 5 11 11 C 1.53001 * 109.47168 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47355 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47355 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47168 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.54625 * 101.76679 * 25.41758 * 5 4 3 23 23 C 1.34419 * 124.35175 * 270.02535 * 3 2 1 24 24 O 1.21276 * 124.94147 * 0.38580 * 23 3 2 25 25 H 1.08998 * 109.47156 * 59.99540 * 1 2 3 26 26 H 1.09003 * 109.47450 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47082 * 300.00045 * 1 2 3 28 28 H 1.09003 * 109.47082 * 239.99955 * 2 1 3 29 29 H 1.08998 * 109.46805 * 120.00045 * 2 1 3 30 30 H 1.08999 * 110.24174 * 44.00244 * 4 3 2 31 31 H 1.09001 * 110.31861 * 282.04752 * 4 3 2 32 32 H 0.97005 * 119.99919 * 334.99566 * 7 5 4 33 33 H 1.08994 * 109.47211 * 59.99931 * 10 8 7 34 34 H 1.09003 * 109.47615 * 299.99937 * 10 8 7 35 35 H 1.09002 * 109.46926 * 60.00175 * 11 10 8 36 36 H 1.08992 * 109.47494 * 300.00169 * 11 10 8 37 37 H 1.09002 * 109.46807 * 60.00291 * 12 11 10 38 38 H 1.08998 * 109.47285 * 299.99893 * 12 11 10 39 39 H 1.09007 * 109.46922 * 59.99890 * 13 12 11 40 40 H 1.09003 * 109.46836 * 300.00646 * 13 12 11 41 41 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 42 42 H 1.09001 * 110.48764 * 93.88039 * 22 5 4 43 43 H 1.09003 * 110.48243 * 216.52789 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 3.1741 3.3443 0.7486 6 1 4.2329 3.1040 0.8451 7 7 2.8463 4.5639 1.4912 8 6 3.7681 5.5375 1.6286 9 8 4.8691 5.4037 1.1379 10 6 3.4307 6.7922 2.3919 11 6 4.6424 7.7264 2.3988 12 6 4.2997 9.0006 3.1732 13 6 5.5116 9.9345 3.1806 14 6 5.1742 11.1893 3.9440 15 1 4.1936 11.3086 4.3806 16 6 6.1174 12.1851 4.0850 17 7 7.3117 12.0396 3.5537 18 14 5.6989 13.7407 5.0306 19 1 5.1348 14.7499 4.0986 20 1 4.7002 13.4264 6.0836 21 1 6.9293 14.2826 5.6613 22 6 2.7687 3.4756 -0.7377 23 6 2.2708 2.0964 -1.1097 24 8 2.1211 1.6945 -2.2442 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8327 1.5531 1.9382 31 1 1.3645 2.5304 1.6446 32 1 1.9658 4.6707 1.8840 33 1 3.1659 6.5337 3.4171 34 1 2.5883 7.2927 1.9144 35 1 4.9075 7.9850 1.3736 36 1 5.4845 7.2258 2.8766 37 1 4.0343 8.7424 4.1984 38 1 3.4578 9.5012 2.6950 39 1 5.7775 10.1928 2.1555 40 1 6.3533 9.4337 3.6591 41 1 7.9751 12.7404 3.6526 42 1 1.9735 4.2122 -0.8527 43 1 3.6318 3.7464 -1.3460 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590776328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:57 Heat of formation + Delta-G solvation = -95.820417 kcal Electronic energy + Delta-G solvation = -21331.445213 eV Core-core repulsion = 17989.622918 eV Total energy + Delta-G solvation = -3341.822295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05668 -39.56698 -36.98600 -35.34627 -34.82798 -32.94012 -32.51837 -30.06095 -29.21086 -27.87882 -25.66449 -23.91980 -22.84965 -21.68863 -20.60462 -20.00400 -19.74140 -17.37721 -17.31926 -16.48784 -16.23528 -16.04535 -15.71453 -15.27040 -14.54929 -14.43450 -14.20925 -14.07775 -13.81826 -13.70963 -13.55028 -12.84349 -12.64680 -12.48721 -12.39220 -12.05947 -11.72130 -11.67049 -11.61725 -11.56893 -10.99474 -10.56274 -10.51795 -10.43085 -10.35993 -9.91542 -9.63084 -9.36393 -9.24300 -9.23240 -8.99363 -8.30993 -5.95761 -3.98305 2.20577 2.40440 2.58932 2.91498 3.33581 3.39712 3.42631 3.87848 4.04201 4.40592 4.47129 4.48402 4.59513 4.70786 4.80153 4.86667 4.94369 5.05210 5.21277 5.25725 5.31737 5.34999 5.39614 5.47000 5.51099 5.67767 5.81562 6.05800 6.10853 6.11586 6.27375 6.51935 6.63506 6.81641 6.99541 7.17710 7.25571 7.73386 7.76191 7.89126 8.05438 8.11644 8.47174 9.09416 9.65322 11.15496 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.052320 B = 0.002161 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.036817 B =12956.352017 C =13171.010144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.098 3.902 5 C 0.136 3.864 6 H 0.114 0.886 7 N -0.730 5.730 8 C 0.516 3.484 9 O -0.528 6.528 10 C -0.138 4.138 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.274 1.274 21 H -0.287 1.287 22 C -0.169 4.169 23 C 0.522 3.478 24 O -0.528 6.528 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.403 0.597 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.109 0.891 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.871 -24.352 -3.421 28.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.026 4.026 5 C 0.029 3.971 6 H 0.132 0.868 7 N -0.384 5.384 8 C 0.304 3.696 9 O -0.403 6.403 10 C -0.178 4.178 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.018 4.018 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.199 1.199 21 H -0.213 1.213 22 C -0.211 4.211 23 C 0.310 3.690 24 O -0.404 6.404 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.238 0.762 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.128 0.872 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.980 -24.645 -4.392 28.672 hybrid contribution -0.693 0.930 0.783 1.399 sum -14.673 -23.715 -3.609 28.120 Atomic orbital electron populations 1.22165 0.95642 1.02507 1.02525 1.21379 0.94471 0.80834 1.03361 1.48328 1.66366 1.13959 1.06921 1.22301 0.99671 0.92849 0.87740 1.21689 1.01005 0.84435 0.89949 0.86786 1.46037 1.17239 1.17951 1.57203 1.21187 0.84097 0.84679 0.79681 1.90730 1.22275 1.79533 1.47769 1.21806 1.02267 0.93125 1.00602 1.21464 0.95351 0.95445 1.01954 1.21650 1.00754 0.94369 0.98025 1.19100 0.92298 0.93206 0.97174 1.21278 0.98668 1.02077 1.33848 0.92762 1.25052 0.95103 0.98558 0.95924 1.69976 1.04424 1.33819 1.45195 0.86607 0.77757 0.83569 0.80117 1.20717 1.19938 1.21265 1.22871 1.04372 0.95753 0.98092 1.20874 0.76429 0.87386 0.84348 1.90734 1.53381 1.75180 1.21108 0.92181 0.91285 0.92366 0.89847 0.90168 0.89361 0.90483 0.76236 0.88952 0.88962 0.91752 0.91753 0.93466 0.93461 0.96584 0.96583 0.93042 0.87239 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 2 C 0.12 0.70 6.65 -4.04 -0.03 0.67 16 3 N -0.62 -4.48 2.93 -172.42 -0.51 -4.99 16 4 C 0.10 0.48 7.08 -3.12 -0.02 0.46 16 5 C 0.14 1.00 3.53 -66.30 -0.23 0.76 16 6 H 0.11 1.03 7.54 -51.93 -0.39 0.63 16 7 N -0.73 -5.42 5.15 -52.23 -0.27 -5.69 16 8 C 0.52 6.09 7.83 -10.99 -0.09 6.00 16 9 O -0.53 -8.63 15.62 5.56 0.09 -8.54 16 10 C -0.14 -1.61 5.70 -27.89 -0.16 -1.76 16 11 C -0.10 -1.76 4.50 -26.73 -0.12 -1.88 16 12 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 13 C 0.02 0.50 4.97 -27.89 -0.14 0.37 16 14 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.17 -1.46 6.59 -26.74 -0.18 -1.64 16 23 C 0.52 5.35 8.02 -10.86 -0.09 5.27 16 24 O -0.53 -7.56 17.59 5.56 0.10 -7.47 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.58 7.93 -51.93 -0.41 0.17 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.25 7.80 -51.93 -0.40 -0.15 16 32 H 0.40 1.74 8.43 -40.82 -0.34 1.39 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.11 0.86 8.08 -51.93 -0.42 0.44 16 43 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -36.04 360.01 -8.10 -44.13 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -7.43 Total: -4.75 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -1.22 Total: -8.25 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.04 Total: -37.28 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.18 Total: -16.01 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.04 -8.10 -44.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590776328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.687 kcal (2) G-P(sol) polarization free energy of solvation -36.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds