Wall clock time and date at job start Tue Mar 31 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47393 * 2 1 4 4 C 1.46767 * 124.34891 * 90.00006 * 3 2 1 5 5 C 1.54475 * 105.47233 * 163.00630 * 4 3 2 6 6 H 1.08999 * 110.96938 * 267.25819 * 5 4 3 7 7 N 1.46504 * 110.96912 * 143.53752 * 5 4 3 8 8 C 1.34774 * 120.00240 * 154.99783 * 7 5 4 9 9 O 1.21283 * 119.99643 * 359.97438 * 8 7 5 10 10 C 1.50694 * 119.99993 * 179.97438 * 8 7 5 11 11 C 1.53001 * 109.47168 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47355 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47355 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47168 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.54625 * 101.76679 * 25.41758 * 5 4 3 23 23 C 1.34419 * 124.35175 * 270.02535 * 3 2 1 24 24 O 1.21276 * 124.94147 * 0.38580 * 23 3 2 25 25 H 1.08998 * 109.47156 * 59.99540 * 1 2 3 26 26 H 1.09003 * 109.47450 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47082 * 300.00045 * 1 2 3 28 28 H 1.09003 * 109.47082 * 239.99955 * 2 1 3 29 29 H 1.08998 * 109.46805 * 120.00045 * 2 1 3 30 30 H 1.08999 * 110.24174 * 44.00244 * 4 3 2 31 31 H 1.09001 * 110.31861 * 282.04752 * 4 3 2 32 32 H 0.97005 * 119.99919 * 334.99566 * 7 5 4 33 33 H 1.08994 * 109.47211 * 59.99931 * 10 8 7 34 34 H 1.09003 * 109.47615 * 299.99937 * 10 8 7 35 35 H 1.09002 * 109.46926 * 60.00175 * 11 10 8 36 36 H 1.08992 * 109.47494 * 300.00169 * 11 10 8 37 37 H 1.09002 * 109.46807 * 60.00291 * 12 11 10 38 38 H 1.08998 * 109.47285 * 299.99893 * 12 11 10 39 39 H 1.09007 * 109.46922 * 59.99890 * 13 12 11 40 40 H 1.09003 * 109.46836 * 300.00646 * 13 12 11 41 41 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 42 42 H 1.09001 * 110.48764 * 93.88039 * 22 5 4 43 43 H 1.09003 * 110.48243 * 216.52789 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 3.1741 3.3443 0.7486 6 1 4.2329 3.1040 0.8451 7 7 2.8463 4.5639 1.4912 8 6 3.7681 5.5375 1.6286 9 8 4.8691 5.4037 1.1379 10 6 3.4307 6.7922 2.3919 11 6 4.6424 7.7264 2.3988 12 6 4.2997 9.0006 3.1732 13 6 5.5116 9.9345 3.1806 14 6 5.1742 11.1893 3.9440 15 1 4.1936 11.3086 4.3806 16 6 6.1174 12.1851 4.0850 17 7 7.3117 12.0396 3.5537 18 14 5.6989 13.7407 5.0306 19 1 5.1348 14.7499 4.0986 20 1 4.7002 13.4264 6.0836 21 1 6.9293 14.2826 5.6613 22 6 2.7687 3.4756 -0.7377 23 6 2.2708 2.0964 -1.1097 24 8 2.1211 1.6945 -2.2442 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8327 1.5531 1.9382 31 1 1.3645 2.5304 1.6446 32 1 1.9658 4.6707 1.8840 33 1 3.1659 6.5337 3.4171 34 1 2.5883 7.2927 1.9144 35 1 4.9075 7.9850 1.3736 36 1 5.4845 7.2258 2.8766 37 1 4.0343 8.7424 4.1984 38 1 3.4578 9.5012 2.6950 39 1 5.7775 10.1928 2.1555 40 1 6.3533 9.4337 3.6591 41 1 7.9751 12.7404 3.6526 42 1 1.9735 4.2122 -0.8527 43 1 3.6318 3.7464 -1.3460 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590776328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:57 Heat of formation + Delta-G solvation = -121.054597 kcal Electronic energy + Delta-G solvation = -21332.539449 eV Core-core repulsion = 17989.622918 eV Total energy + Delta-G solvation = -3342.916531 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77108 -40.49723 -37.82515 -36.62530 -35.89027 -34.58598 -33.51193 -31.47865 -30.02642 -28.61539 -27.28665 -24.66771 -24.11573 -22.62709 -21.76728 -21.37902 -20.43702 -18.41126 -18.20226 -17.98929 -17.23942 -16.83025 -16.74404 -16.49152 -16.02135 -15.56828 -15.03972 -14.72608 -14.67654 -14.53335 -14.50224 -14.27518 -13.71872 -13.55630 -13.31011 -13.22979 -12.97953 -12.82217 -12.74520 -12.35458 -12.31723 -12.11318 -12.07521 -12.02987 -11.33549 -11.32442 -11.20390 -11.11450 -10.73241 -10.53245 -10.14032 -9.82829 -8.17105 -6.28995 1.41635 1.42149 1.43728 1.54730 1.65446 1.83905 2.19153 2.43303 3.15626 3.27727 3.44044 3.73769 3.93416 3.96965 4.11253 4.13360 4.21803 4.25069 4.47775 4.52505 4.56793 4.67059 4.74408 4.77140 4.82391 4.86592 4.91994 4.93682 4.96227 5.24740 5.27518 5.37280 5.38741 5.46641 5.52673 5.61067 5.81830 5.91062 5.98848 6.27482 6.56297 6.90017 7.02381 7.30097 7.40537 8.94975 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.052320 B = 0.002161 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.036817 B =12956.352017 C =13171.010144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.613 5.613 4 C 0.105 3.895 5 C 0.138 3.862 6 H 0.097 0.903 7 N -0.704 5.704 8 C 0.517 3.483 9 O -0.583 6.583 10 C -0.128 4.128 11 C -0.098 4.098 12 C -0.096 4.096 13 C 0.017 3.983 14 C -0.540 4.540 15 H 0.067 0.933 16 C -0.009 4.009 17 N -0.938 5.938 18 Si 0.969 3.031 19 H -0.273 1.273 20 H -0.258 1.258 21 H -0.285 1.285 22 C -0.166 4.166 23 C 0.515 3.485 24 O -0.580 6.580 25 H 0.034 0.966 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.424 0.576 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.040 0.960 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.060 0.940 39 H -0.017 1.017 40 H -0.015 1.015 41 H 0.262 0.738 42 H 0.120 0.880 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.782 -24.807 -0.992 30.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.346 5.346 4 C -0.018 4.018 5 C 0.032 3.968 6 H 0.115 0.885 7 N -0.359 5.359 8 C 0.306 3.694 9 O -0.462 6.462 10 C -0.167 4.167 11 C -0.136 4.136 12 C -0.133 4.133 13 C -0.020 4.020 14 C -0.578 4.578 15 H 0.085 0.915 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.793 3.207 19 H -0.198 1.198 20 H -0.182 1.182 21 H -0.211 1.211 22 C -0.208 4.208 23 C 0.303 3.697 24 O -0.460 6.460 25 H 0.053 0.947 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.263 0.737 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.001 0.999 40 H 0.003 0.997 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.964 -25.134 -1.906 30.383 hybrid contribution 0.237 1.025 0.022 1.052 sum -16.727 -24.109 -1.884 29.404 Atomic orbital electron populations 1.22115 0.94908 1.03327 1.01875 1.21576 0.95047 0.79982 1.04013 1.48454 1.64878 1.14468 1.06830 1.22464 1.00775 0.91701 0.86856 1.21620 1.00819 0.85249 0.89136 0.88534 1.45713 1.17340 1.16849 1.55954 1.21197 0.83784 0.85350 0.79107 1.90729 1.24723 1.80594 1.50167 1.21676 1.00112 0.92017 1.02901 1.21258 0.97422 0.95264 0.99684 1.21448 0.97950 0.94309 0.99638 1.19077 0.94202 0.94199 0.94551 1.21769 0.99228 1.02901 1.33897 0.91502 1.26107 0.94868 1.02626 0.96982 1.70135 1.05732 1.35219 1.46755 0.85387 0.77794 0.78648 0.78835 1.19830 1.18214 1.21063 1.22811 1.03883 0.95317 0.98772 1.21110 0.76202 0.88091 0.84309 1.90700 1.55871 1.76249 1.23214 0.94723 0.89834 0.90962 0.91698 0.87042 0.86984 0.87397 0.73736 0.85792 0.86190 0.94081 0.93787 0.91910 0.92108 0.99857 0.99694 0.92922 0.86215 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 10.24 71.98 0.74 -0.62 16 2 C 0.11 1.10 6.65 86.38 0.57 1.68 16 3 N -0.61 -7.72 2.93 -818.00 -2.40 -10.12 16 4 C 0.10 0.65 7.08 86.83 0.61 1.27 16 5 C 0.14 1.77 3.53 46.05 0.16 1.94 16 6 H 0.10 1.67 7.54 -2.39 -0.02 1.66 16 7 N -0.70 -8.33 5.15 -437.55 -2.25 -10.58 16 8 C 0.52 11.31 7.83 87.66 0.69 11.99 16 9 O -0.58 -19.27 15.62 -3.04 -0.05 -19.32 16 10 C -0.13 -2.60 5.70 29.85 0.17 -2.43 16 11 C -0.10 -3.29 4.50 30.59 0.14 -3.16 16 12 C -0.10 -3.74 5.15 30.59 0.16 -3.58 16 13 C 0.02 0.91 4.97 29.85 0.15 1.06 16 14 C -0.54 -30.91 9.11 25.60 0.23 -30.67 16 15 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 16 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 17 N -0.94 -58.76 13.29 21.45 0.28 -58.48 16 18 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 C -0.17 -2.82 6.59 30.59 0.20 -2.61 16 23 C 0.51 10.55 8.02 87.90 0.71 11.25 16 24 O -0.58 -17.43 17.59 -3.02 -0.05 -17.49 16 25 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 0.89 7.93 -2.39 -0.02 0.87 16 29 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.11 0.12 7.80 -2.39 -0.02 0.10 16 32 H 0.42 1.64 8.43 -92.70 -0.78 0.86 16 33 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 36 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 40 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 41 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.12 1.74 8.08 -2.39 -0.02 1.72 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -83.71 360.01 2.75 -80.96 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 0.20 Total: 2.50 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 4.99 Total: -13.94 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -4.37 Total: -79.17 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.10 Total: -36.80 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -83.71 2.75 -80.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590776328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.091 kcal (2) G-P(sol) polarization free energy of solvation -83.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds