Wall clock time and date at job start Tue Mar 31 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47075 * 2 1 4 4 C 1.46764 * 124.35282 * 270.00057 * 3 2 1 5 5 C 1.54484 * 105.47181 * 196.99816 * 4 3 2 6 6 H 1.09000 * 110.96838 * 92.70823 * 5 4 3 7 7 N 1.46497 * 110.96270 * 216.42751 * 5 4 3 8 8 C 1.34778 * 119.99594 * 204.99720 * 7 5 4 9 9 O 1.21285 * 120.00201 * 0.02562 * 8 7 5 10 10 C 1.50705 * 119.99832 * 180.02562 * 8 7 5 11 11 C 1.53000 * 109.46825 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.46873 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46873 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47017 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00011 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00150 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99854 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99690 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.47063 * 90.00480 * 18 16 14 20 20 H 1.48504 * 109.47101 * 209.99919 * 18 16 14 21 21 H 1.48494 * 109.47294 * 330.00156 * 18 16 14 22 22 C 1.54624 * 101.76286 * 334.58202 * 5 4 3 23 23 C 1.34424 * 124.34411 * 89.97917 * 3 2 1 24 24 O 1.21279 * 124.94294 * 359.34446 * 23 3 2 25 25 H 1.09004 * 109.47219 * 59.99076 * 1 2 3 26 26 H 1.09000 * 109.47257 * 180.02562 * 1 2 3 27 27 H 1.09011 * 109.47076 * 299.99737 * 1 2 3 28 28 H 1.08998 * 109.46903 * 240.00468 * 2 1 3 29 29 H 1.08996 * 109.47099 * 120.00062 * 2 1 3 30 30 H 1.09002 * 110.24057 * 315.99681 * 4 3 2 31 31 H 1.08999 * 110.24524 * 77.99636 * 4 3 2 32 32 H 0.97003 * 120.00824 * 25.00346 * 7 5 4 33 33 H 1.08996 * 109.47301 * 300.00361 * 10 8 7 34 34 H 1.09000 * 109.46806 * 60.00599 * 10 8 7 35 35 H 1.09005 * 109.47298 * 299.99932 * 11 10 8 36 36 H 1.08995 * 109.47560 * 60.00193 * 11 10 8 37 37 H 1.08996 * 109.47008 * 299.99883 * 12 11 10 38 38 H 1.09000 * 109.47051 * 60.00091 * 12 11 10 39 39 H 1.09005 * 109.47298 * 299.99603 * 13 12 11 40 40 H 1.08995 * 109.47560 * 59.99864 * 13 12 11 41 41 H 0.97006 * 119.99890 * 179.97438 * 17 16 14 42 42 H 1.09000 * 110.48926 * 266.12016 * 22 5 4 43 43 H 1.09001 * 110.48194 * 143.48372 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1621 -1.2117 5 6 3.1740 3.3445 -0.7484 6 1 4.2328 3.1040 -0.8444 7 7 2.8467 4.5638 -1.4915 8 6 3.7688 5.5373 -1.6287 9 8 4.8696 5.4035 -1.1374 10 6 3.4319 6.7919 -2.3926 11 6 4.6438 7.7259 -2.3991 12 6 4.3016 9.0000 -3.1741 13 6 5.5133 9.9342 -3.1800 14 6 5.1761 11.1894 -3.9428 15 1 4.1958 11.3086 -4.3801 16 6 6.1194 12.1851 -4.0834 17 7 5.8253 13.2802 -4.7496 18 14 7.8152 11.9785 -3.3278 19 1 8.7187 11.3267 -4.3098 20 1 8.3600 13.3108 -2.9624 21 1 7.7151 11.1338 -2.1105 22 6 2.7687 3.4756 0.7379 23 6 2.2707 2.0964 1.1099 24 8 2.1166 1.6960 2.2442 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.8327 1.5533 -1.9381 31 1 1.3637 2.5306 -1.6430 32 1 1.9665 4.6708 -1.8848 33 1 3.1676 6.5331 -3.4179 34 1 2.5895 7.2926 -1.9155 35 1 4.9085 7.9847 -1.3738 36 1 5.4861 7.2250 -2.8763 37 1 4.0367 8.7415 -4.1993 38 1 3.4595 9.5007 -2.6964 39 1 5.7778 10.1927 -2.1546 40 1 6.3557 9.4337 -3.6573 41 1 6.4888 13.9809 -4.8482 42 1 1.9735 4.2122 0.8530 43 1 3.6317 3.7465 1.3462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590776329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:00 Heat of formation + Delta-G solvation = -92.545271 kcal Electronic energy + Delta-G solvation = -21388.129771 eV Core-core repulsion = 18046.449497 eV Total energy + Delta-G solvation = -3341.680274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.09506 -39.62818 -37.02568 -35.41480 -34.94650 -32.96988 -32.50189 -30.34479 -29.36835 -27.95811 -25.93907 -23.94053 -22.75460 -21.62159 -20.59471 -20.05191 -19.77465 -17.42462 -17.37452 -16.64358 -16.50871 -16.12829 -15.79688 -15.32489 -14.60136 -14.27432 -14.19984 -14.11310 -13.89303 -13.77410 -13.62029 -12.86869 -12.66640 -12.62004 -12.46744 -12.17441 -12.08043 -11.77602 -11.70637 -11.60557 -11.13830 -10.76681 -10.56513 -10.39931 -10.06073 -9.84543 -9.66754 -9.46020 -9.41771 -9.26504 -9.13117 -8.50244 -6.01381 -3.98928 2.17323 2.36658 2.52455 2.86407 3.34669 3.41937 3.47695 3.83821 4.00400 4.36662 4.43453 4.49308 4.56684 4.67924 4.73396 4.84145 4.91424 5.01634 5.15959 5.19010 5.23736 5.32325 5.33535 5.41802 5.47037 5.65884 5.73088 5.99205 6.02693 6.05787 6.11798 6.37881 6.60425 6.65302 6.79317 6.96943 7.18632 7.36625 7.49422 7.72981 7.83807 8.04788 8.57201 9.03507 9.61964 11.12047 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046632 B = 0.002293 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.298654 B =12207.252079 C =12482.925541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.098 3.902 5 C 0.136 3.864 6 H 0.114 0.886 7 N -0.729 5.729 8 C 0.516 3.484 9 O -0.530 6.530 10 C -0.138 4.138 11 C -0.107 4.107 12 C -0.103 4.103 13 C -0.016 4.016 14 C -0.520 4.520 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.264 1.264 22 C -0.170 4.170 23 C 0.522 3.478 24 O -0.528 6.528 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.403 0.597 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.016 0.984 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.110 0.890 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.600 -27.442 6.260 30.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.026 4.026 5 C 0.029 3.971 6 H 0.132 0.868 7 N -0.383 5.383 8 C 0.304 3.696 9 O -0.405 6.405 10 C -0.178 4.178 11 C -0.145 4.145 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.558 4.558 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.211 4.211 23 C 0.310 3.690 24 O -0.404 6.404 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.238 0.762 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.128 0.872 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.813 -27.650 7.161 30.541 hybrid contribution 0.353 0.067 0.012 0.359 sum -10.461 -27.584 7.173 30.360 Atomic orbital electron populations 1.22167 0.95614 1.02529 1.02540 1.21382 0.94497 0.80799 1.03362 1.48333 1.66354 1.13987 1.06905 1.22306 0.99680 0.92821 0.87756 1.21691 1.00999 0.84433 0.89961 0.86808 1.46025 1.17268 1.17953 1.57096 1.21169 0.84084 0.84679 0.79658 1.90724 1.22330 1.79584 1.47886 1.21790 1.02142 0.93100 1.00790 1.21497 0.95588 0.95536 1.01880 1.21477 1.00027 0.93846 0.98674 1.19580 0.93822 0.95037 0.96882 1.21179 1.00926 1.00097 1.33559 0.91115 1.25050 0.98695 0.95095 0.94830 1.69920 1.35060 1.07567 1.41936 0.86771 0.84680 0.77355 0.80464 1.20326 1.21463 1.18901 1.22869 1.04373 0.95798 0.98050 1.20868 0.76468 0.87355 0.84357 1.90736 1.53329 1.75195 1.21111 0.92345 0.91268 0.92177 0.90160 0.89848 0.89342 0.90443 0.76161 0.88782 0.88792 0.91741 0.91751 0.92848 0.92818 0.96612 0.97057 0.92815 0.87218 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 2 C 0.12 0.67 6.65 -4.04 -0.03 0.65 16 3 N -0.62 -4.31 2.93 -172.41 -0.51 -4.81 16 4 C 0.10 0.45 7.08 -3.12 -0.02 0.43 16 5 C 0.14 0.94 3.53 -66.30 -0.23 0.70 16 6 H 0.11 0.97 7.54 -51.93 -0.39 0.58 16 7 N -0.73 -5.05 5.15 -52.22 -0.27 -5.32 16 8 C 0.52 5.74 7.83 -10.98 -0.09 5.66 16 9 O -0.53 -8.23 15.62 5.55 0.09 -8.14 16 10 C -0.14 -1.50 5.70 -27.88 -0.16 -1.66 16 11 C -0.11 -1.68 4.50 -26.73 -0.12 -1.80 16 12 C -0.10 -1.94 5.15 -26.73 -0.14 -2.07 16 13 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 14 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 16 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 17 N -0.91 -28.17 13.96 55.43 0.77 -27.40 16 18 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 21 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 22 C -0.17 -1.40 6.59 -26.74 -0.18 -1.57 16 23 C 0.52 5.19 8.02 -10.86 -0.09 5.11 16 24 O -0.53 -7.42 17.60 5.56 0.10 -7.32 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.23 7.80 -51.93 -0.40 -0.17 16 32 H 0.40 1.57 8.43 -40.82 -0.34 1.22 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 36 H 0.06 1.07 8.10 -51.93 -0.42 0.64 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 40 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.11 0.82 8.08 -51.93 -0.42 0.40 16 43 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -36.35 356.42 -7.72 -44.07 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -7.39 Total: -4.97 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.21 Total: -8.99 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.00 Total: -37.54 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.18 Total: -15.46 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.35 -7.72 -44.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590776329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.470 kcal (2) G-P(sol) polarization free energy of solvation -36.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds