Wall clock time and date at job start Tue Mar 31 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47002 * 2 1 4 4 C 1.52998 * 109.46678 * 119.99966 * 2 1 3 5 5 N 1.46496 * 109.47185 * 294.99818 * 4 2 1 6 6 C 1.34778 * 119.99967 * 180.02562 * 5 4 2 7 7 O 1.21585 * 119.99945 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00134 * 180.02562 * 6 5 4 9 9 C 1.47031 * 125.64691 * 0.02562 * 8 6 5 10 10 C 1.54327 * 107.26879 * 181.01415 * 9 8 6 11 11 C 1.55156 * 102.94181 * 22.19441 * 10 9 8 12 12 O 1.42897 * 111.00579 * 82.57426 * 11 10 9 13 13 C 1.50708 * 110.99876 * 206.38340 * 11 10 9 14 14 H 1.07995 * 120.00149 * 0.02562 * 13 11 10 15 15 C 1.37875 * 119.99534 * 180.02562 * 13 11 10 16 16 N 1.31519 * 120.00164 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99936 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47324 * 59.99299 * 17 15 13 19 19 H 1.48498 * 109.47370 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47013 * 299.99548 * 17 15 13 21 21 C 1.47422 * 125.65171 * 179.97438 * 8 6 5 22 22 C 1.53000 * 109.47112 * 239.99835 * 2 1 3 23 23 C 1.53007 * 117.49807 * 128.62359 * 22 2 1 24 24 C 1.52998 * 59.99875 * 252.50718 * 23 22 2 25 25 H 1.09004 * 109.47331 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47328 * 300.00244 * 1 2 3 27 27 H 1.09005 * 109.46927 * 60.00021 * 1 2 3 28 28 H 1.09006 * 109.47079 * 175.00125 * 4 2 1 29 29 H 1.08998 * 109.47325 * 55.00483 * 4 2 1 30 30 H 0.97000 * 120.00179 * 0.02562 * 5 4 2 31 31 H 1.08998 * 109.88059 * 61.59780 * 9 8 6 32 32 H 1.08994 * 109.87878 * 300.43060 * 9 8 6 33 33 H 1.09001 * 110.71763 * 140.55775 * 10 9 8 34 34 H 1.08997 * 110.72099 * 263.64813 * 10 9 8 35 35 H 0.96698 * 114.00190 * 179.97438 * 12 11 10 36 36 H 0.97003 * 119.99594 * 180.02562 * 16 15 13 37 37 H 1.09000 * 110.36378 * 37.07938 * 21 8 6 38 38 H 1.09001 * 110.46274 * 274.80114 * 21 8 6 39 39 H 1.08999 * 115.55267 * 274.33050 * 22 2 1 40 40 H 1.08998 * 117.49362 * 0.02562 * 23 22 2 41 41 H 1.08998 * 117.49521 * 145.02036 * 23 22 2 42 42 H 1.09001 * 117.50275 * 252.50780 * 24 23 22 43 43 H 1.09001 * 117.49606 * 107.48492 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6523 0.0354 2.4423 6 6 1.9962 -0.4131 3.6659 7 8 2.6277 -1.4458 3.7795 8 7 1.6393 0.2827 4.7636 9 6 0.8770 1.5400 4.7708 10 6 0.7294 1.9777 6.2433 11 6 1.9018 1.2415 6.9439 12 8 3.1240 1.9668 6.7951 13 6 1.5946 0.9993 8.3994 14 1 0.6543 1.3298 8.8151 15 6 2.5142 0.3558 9.2001 16 7 3.6592 -0.0471 8.6936 17 14 2.1334 0.0548 11.0039 18 1 0.9108 -0.7801 11.1191 19 1 3.2753 -0.6498 11.6401 20 1 1.9110 1.3549 11.6864 21 6 1.9474 -0.0913 6.1559 22 6 2.0400 -0.7213 -1.2492 23 6 3.0742 0.0051 -2.1117 24 6 1.6358 -0.1496 -2.6096 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.1262 -0.7995 1.2057 29 1 1.6053 -1.7198 1.2951 30 1 1.1482 0.8591 2.3517 31 1 -0.1074 1.3792 4.3314 32 1 1.4158 2.3032 4.2094 33 1 0.8409 3.0579 6.3375 34 1 -0.2296 1.6538 6.6476 35 1 3.8852 1.5455 7.2170 36 1 4.3060 -0.5002 9.2570 37 1 2.9410 -0.5351 6.2184 38 1 1.1983 -0.7843 6.5390 39 1 2.1267 -1.8045 -1.1642 40 1 3.3915 0.9967 -1.7888 41 1 3.8416 -0.6002 -2.5941 42 1 1.4569 -0.8567 -3.4197 43 1 1.0065 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591929895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:59 Heat of formation + Delta-G solvation = -63.607951 kcal Electronic energy + Delta-G solvation = -22706.583724 eV Core-core repulsion = 19366.158267 eV Total energy + Delta-G solvation = -3340.425457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.70304 -38.45042 -37.24933 -34.79495 -34.20285 -32.12314 -31.66990 -29.91685 -27.83683 -26.64748 -24.91477 -23.16813 -22.50855 -22.11445 -20.26192 -19.60851 -19.24446 -17.60799 -17.05639 -16.00078 -15.61802 -15.33799 -15.05613 -14.69854 -14.34831 -14.25296 -13.92747 -13.32512 -12.97874 -12.95130 -12.79761 -12.62933 -12.04592 -11.84347 -11.70355 -11.60073 -11.37290 -11.30265 -11.01060 -10.98778 -10.77719 -10.56932 -10.49160 -10.46646 -10.16835 -10.15299 -9.57802 -9.36675 -8.75690 -8.65609 -8.34049 -7.63221 -6.26720 -4.36467 3.16147 3.24136 3.29161 3.31007 3.56634 3.81164 4.26272 4.34936 4.55652 4.62055 4.68034 4.86771 5.00189 5.12503 5.15793 5.30739 5.39283 5.43956 5.60582 5.63433 5.66968 5.71484 5.81223 5.86244 5.88920 5.91715 6.04573 6.06457 6.15531 6.20250 6.53644 6.73441 6.83850 6.90383 7.00923 7.26811 7.35581 7.68485 7.76904 8.03104 8.58343 8.68022 9.19335 9.33283 9.49306 10.80469 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039295 B = 0.003326 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.386238 B = 8417.036953 C = 8631.976647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 H 0.076 0.924 4 C 0.148 3.852 5 N -0.751 5.751 6 C 0.716 3.284 7 O -0.598 6.598 8 N -0.628 5.628 9 C 0.106 3.894 10 C -0.116 4.116 11 C 0.249 3.751 12 O -0.585 6.585 13 C -0.538 4.538 14 H 0.066 0.934 15 C 0.070 3.930 16 N -0.894 5.894 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.112 3.888 22 C -0.144 4.144 23 C -0.180 4.180 24 C -0.178 4.178 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.392 0.608 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.386 0.614 36 H 0.272 0.728 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 2.000 -17.416 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 H 0.094 0.906 4 C 0.024 3.976 5 N -0.408 5.408 6 C 0.417 3.583 7 O -0.477 6.477 8 N -0.364 5.364 9 C -0.017 4.017 10 C -0.154 4.154 11 C 0.208 3.792 12 O -0.395 6.395 13 C -0.577 4.577 14 H 0.085 0.915 15 C -0.133 4.133 16 N -0.533 5.533 17 Si 0.732 3.268 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.010 4.010 22 C -0.163 4.163 23 C -0.217 4.217 24 C -0.215 4.215 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.226 0.774 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.238 0.762 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.316 1.487 -17.663 18.505 hybrid contribution -0.023 -0.245 1.150 1.176 sum -5.339 1.241 -16.512 17.398 Atomic orbital electron populations 1.21820 0.94437 1.02366 1.01579 1.20952 0.96228 0.99373 0.92574 0.90590 1.21086 0.99841 0.94713 0.82003 1.45117 1.62274 1.28802 1.04643 1.15522 0.79954 0.83123 0.79654 1.90879 1.46123 1.25208 1.85516 1.47888 1.57403 1.24602 1.06554 1.21912 0.94094 0.86287 0.99447 1.22595 0.99694 1.00911 0.92229 1.19590 0.82088 0.85409 0.92067 1.86053 1.20184 1.53063 1.80189 1.21459 1.03717 1.38732 0.93754 0.91537 1.25090 0.94791 0.93951 0.99436 1.69567 1.07710 1.39240 1.36816 0.86439 0.78005 0.78489 0.83825 1.20023 1.21072 1.20006 1.23134 1.01374 1.00311 0.76201 1.22195 1.03708 0.99437 0.90944 1.23037 0.92471 1.02138 1.04037 1.22929 0.98190 1.03264 0.97130 0.92288 0.92504 0.92506 0.91811 0.91899 0.77446 0.93254 0.92728 0.90810 0.90517 0.76179 0.91811 0.90155 0.92539 0.87470 0.88726 0.88847 0.88910 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.91 37.16 0.33 -0.92 16 2 C -0.07 -0.69 2.58 -90.62 -0.23 -0.92 16 3 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 4 C 0.15 1.95 5.05 -4.04 -0.02 1.93 16 5 N -0.75 -11.57 5.24 -65.23 -0.34 -11.91 16 6 C 0.72 14.96 8.49 -86.92 -0.74 14.22 16 7 O -0.60 -14.92 16.60 5.29 0.09 -14.83 16 8 N -0.63 -13.27 3.33 -176.24 -0.59 -13.86 16 9 C 0.11 1.86 6.15 -3.06 -0.02 1.85 16 10 C -0.12 -2.30 6.12 -24.90 -0.15 -2.45 16 11 C 0.25 6.08 0.89 -89.62 -0.08 6.00 16 12 O -0.58 -15.19 13.18 -35.23 -0.46 -15.65 16 13 C -0.54 -14.01 8.25 -34.44 -0.28 -14.30 16 14 H 0.07 1.68 7.76 -52.49 -0.41 1.27 16 15 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 16 N -0.89 -24.07 10.72 55.43 0.59 -23.48 16 17 Si 0.91 20.39 29.54 -169.99 -5.02 15.36 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 21 C 0.11 2.75 5.63 -2.53 -0.01 2.73 16 22 C -0.14 -1.24 5.15 -90.62 -0.47 -1.71 16 23 C -0.18 -1.44 10.18 -26.73 -0.27 -1.71 16 24 C -0.18 -1.31 9.73 -26.73 -0.26 -1.57 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.50 7.18 -51.93 -0.37 0.13 16 27 H 0.06 0.42 7.29 -51.93 -0.38 0.04 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.39 5.07 6.64 -40.82 -0.27 4.80 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.08 1.42 8.02 -51.93 -0.42 1.00 16 35 H 0.39 10.42 6.93 45.56 0.32 10.74 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.08 2.23 7.64 -51.93 -0.40 1.84 16 38 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 39 H 0.11 0.93 8.11 -51.93 -0.42 0.51 16 40 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.65 7.61 -51.93 -0.40 0.25 16 LS Contribution 346.95 15.07 5.23 5.23 Total: -1.00 -30.24 346.95 -9.31 -39.56 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -6.51 Total: 14.67 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -2.30 Total: 4.91 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.33 Total: -49.25 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.38 Total: -30.48 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.24 -9.31 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591929895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.051 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds