Wall clock time and date at job start Tue Mar 31 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46792 * 2 1 4 4 C 1.52998 * 109.47038 * 119.99257 * 2 1 3 5 5 N 1.46500 * 109.47286 * 295.00571 * 4 2 1 6 6 C 1.34777 * 119.99995 * 180.02562 * 5 4 2 7 7 O 1.21582 * 120.00297 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99967 * 179.97438 * 6 5 4 9 9 C 1.47028 * 125.64782 * 359.69129 * 8 6 5 10 10 C 1.54331 * 107.26523 * 178.84640 * 9 8 6 11 11 C 1.55162 * 103.02239 * 338.14049 * 10 9 8 12 12 O 1.42894 * 111.00565 * 277.23104 * 11 10 9 13 13 C 1.50703 * 111.03424 * 153.39001 * 11 10 9 14 14 H 1.08003 * 120.00400 * 272.60702 * 13 11 10 15 15 C 1.37879 * 119.99796 * 92.61417 * 13 11 10 16 16 N 1.31512 * 119.99915 * 173.51236 * 15 13 11 17 17 Si 1.86801 * 119.99929 * 353.51686 * 15 13 11 18 18 H 1.48503 * 109.47148 * 87.32106 * 17 15 13 19 19 H 1.48497 * 109.47304 * 207.32242 * 17 15 13 20 20 H 1.48499 * 109.47132 * 327.32497 * 17 15 13 21 21 C 1.47425 * 125.64930 * 179.97438 * 8 6 5 22 22 C 1.53000 * 109.47419 * 239.99814 * 2 1 3 23 23 C 1.52995 * 117.49987 * 111.37521 * 22 2 1 24 24 C 1.52997 * 117.49675 * 180.02562 * 22 2 1 25 25 H 1.09001 * 109.46821 * 60.00738 * 1 2 3 26 26 H 1.09003 * 109.46792 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47543 * 300.00542 * 1 2 3 28 28 H 1.09000 * 109.47262 * 55.00350 * 4 2 1 29 29 H 1.08997 * 109.47234 * 175.00685 * 4 2 1 30 30 H 0.97009 * 119.99977 * 359.97438 * 5 4 2 31 31 H 1.08995 * 109.88161 * 298.39336 * 9 8 6 32 32 H 1.09002 * 109.87787 * 59.56270 * 9 8 6 33 33 H 1.09001 * 110.85303 * 219.67439 * 10 9 8 34 34 H 1.09004 * 110.51712 * 96.45106 * 10 9 8 35 35 H 0.96698 * 113.99891 * 168.40082 * 12 11 10 36 36 H 0.97003 * 119.99861 * 179.97438 * 16 15 13 37 37 H 1.09008 * 110.36531 * 322.93013 * 21 8 6 38 38 H 1.08997 * 110.36993 * 85.14390 * 21 8 6 39 39 H 1.09000 * 115.56057 * 325.68759 * 22 2 1 40 40 H 1.08996 * 117.50206 * 214.97854 * 23 22 2 41 41 H 1.08996 * 117.49960 * 0.02562 * 23 22 2 42 42 H 1.08996 * 117.50178 * 359.97438 * 24 22 2 43 43 H 1.08998 * 117.50283 * 145.01975 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6524 0.0356 2.4424 6 6 1.9963 -0.4127 3.6660 7 8 2.6280 -1.4453 3.7797 8 7 1.6401 0.2837 4.7635 9 6 0.8848 1.5450 4.7703 10 6 0.6877 1.9531 6.2456 11 6 0.8595 0.6112 7.0054 12 8 -0.3562 -0.1397 7.0003 13 6 1.3408 0.8451 8.4142 14 1 2.3988 0.9180 8.6185 15 6 0.4303 0.9659 9.4426 16 7 0.8497 1.0419 10.6867 17 14 -1.3991 1.0214 9.0686 18 1 -1.9351 -0.3624 9.0125 19 1 -2.0996 1.7806 10.1353 20 1 -1.6169 1.6899 7.7606 21 6 1.9484 -0.0902 6.1559 22 6 2.0401 -0.7213 -1.2492 23 6 2.7420 0.1226 -2.3151 24 6 3.5551 -0.8286 -1.4338 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 1.6055 -1.7196 1.2953 29 1 3.1263 -0.7992 1.2058 30 1 1.1487 0.8597 2.3516 31 1 1.4459 2.3159 4.2422 32 1 -0.0854 1.3986 4.2954 33 1 -0.3102 2.3615 6.4052 34 1 1.4517 2.6688 6.5493 35 1 -0.2559 -1.0526 7.3029 36 1 0.2092 1.1273 11.4101 37 1 1.8888 -1.1715 6.2804 38 1 2.9390 0.2690 6.4347 39 1 1.4312 -1.5584 -1.5905 40 1 2.5949 -0.1594 -3.3576 41 1 2.8407 1.1915 -2.1262 42 1 4.1885 -0.3850 -0.6656 43 1 3.9428 -1.7360 -1.8968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591929896.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:02 Heat of formation + Delta-G solvation = -57.885458 kcal Electronic energy + Delta-G solvation = -22771.684631 eV Core-core repulsion = 19431.507319 eV Total energy + Delta-G solvation = -3340.177311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.98895 -38.63026 -37.62103 -34.93152 -34.69769 -32.37361 -31.94699 -30.16180 -28.35974 -26.70214 -24.96137 -23.23087 -22.64727 -22.22703 -20.37768 -19.83951 -19.54587 -17.86211 -17.37648 -16.02622 -15.94499 -15.57620 -15.13234 -14.83187 -14.72612 -14.52537 -14.11056 -13.58779 -13.46197 -12.95574 -12.76714 -12.66636 -12.34599 -11.97926 -11.89205 -11.76767 -11.61447 -11.52977 -11.48898 -11.14334 -11.01788 -10.50452 -10.48804 -10.38388 -10.25163 -10.19792 -9.80201 -9.23484 -8.95473 -8.66450 -8.52351 -7.97757 -6.19134 -4.31100 2.92159 3.45853 3.49182 3.52027 3.54998 3.68955 4.19713 4.38375 4.49848 4.52808 4.60943 4.79383 4.94140 5.02446 5.05617 5.14696 5.26471 5.34445 5.36261 5.53959 5.56042 5.57073 5.62795 5.75457 5.77843 5.79975 5.84338 5.86767 5.96668 6.10129 6.10706 6.50315 6.54540 6.64282 6.67031 6.72941 7.05678 7.35275 7.49242 8.12796 8.30791 8.62697 8.81928 8.92314 9.42389 10.89745 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038976 B = 0.003510 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.214932 B = 7976.249628 C = 8272.019069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 H 0.076 0.924 4 C 0.146 3.854 5 N -0.749 5.749 6 C 0.718 3.282 7 O -0.599 6.599 8 N -0.629 5.629 9 C 0.102 3.898 10 C -0.120 4.120 11 C 0.219 3.781 12 O -0.559 6.559 13 C -0.552 4.552 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.888 5.888 17 Si 0.952 3.048 18 H -0.293 1.293 19 H -0.327 1.327 20 H -0.270 1.270 21 C 0.108 3.892 22 C -0.145 4.145 23 C -0.178 4.178 24 C -0.180 4.180 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.393 0.607 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.371 0.629 36 H 0.267 0.733 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.344 0.515 -22.698 22.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 H 0.094 0.906 4 C 0.022 3.978 5 N -0.406 5.406 6 C 0.420 3.580 7 O -0.478 6.478 8 N -0.366 5.366 9 C -0.022 4.022 10 C -0.158 4.158 11 C 0.179 3.821 12 O -0.367 6.367 13 C -0.589 4.589 14 H 0.099 0.901 15 C -0.131 4.131 16 N -0.523 5.523 17 Si 0.788 3.212 18 H -0.221 1.221 19 H -0.258 1.258 20 H -0.196 1.196 21 C -0.014 4.014 22 C -0.164 4.164 23 C -0.215 4.215 24 C -0.217 4.217 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.227 0.773 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.219 0.781 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.095 0.273 -22.714 22.716 hybrid contribution -0.885 -0.049 0.043 0.888 sum -0.980 0.224 -22.671 22.694 Atomic orbital electron populations 1.21818 0.94201 1.02406 1.01820 1.20956 0.96456 0.99224 0.92514 0.90572 1.21153 0.99814 0.94927 0.81906 1.45124 1.61993 1.28863 1.04620 1.15462 0.79898 0.82922 0.79691 1.90885 1.46300 1.25031 1.85565 1.47711 1.57906 1.25031 1.05947 1.22042 0.94781 0.85388 0.99955 1.22947 1.02973 0.99047 0.90819 1.20247 0.80340 0.87418 0.94115 1.86101 1.34905 1.27392 1.88295 1.21110 0.95716 1.53101 0.88976 0.90051 1.25118 1.00882 0.92619 0.94471 1.69971 1.35785 1.47369 0.99166 0.85631 0.82540 0.77459 0.75594 1.22077 1.25849 1.19606 1.22975 1.00209 1.00390 0.77856 1.22231 0.95155 1.01970 0.97022 1.23015 1.04701 0.97610 0.96205 1.22990 0.93821 1.01784 1.03102 0.92346 0.92266 0.92389 0.91750 0.91737 0.77254 0.92821 0.92555 0.90202 0.89642 0.78058 0.92406 0.91244 0.91275 0.87518 0.88889 0.88813 0.88521 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.05 37.16 0.34 -0.82 16 2 C -0.07 -0.61 2.58 -90.62 -0.23 -0.85 16 3 H 0.08 0.62 7.90 -51.93 -0.41 0.21 16 4 C 0.15 1.71 4.98 -4.04 -0.02 1.69 16 5 N -0.75 -10.17 5.24 -65.23 -0.34 -10.52 16 6 C 0.72 13.14 8.49 -86.92 -0.74 12.41 16 7 O -0.60 -13.15 16.60 5.29 0.09 -13.07 16 8 N -0.63 -11.52 3.33 -176.24 -0.59 -12.10 16 9 C 0.10 1.62 6.15 -3.06 -0.02 1.60 16 10 C -0.12 -2.28 5.90 -24.89 -0.15 -2.43 16 11 C 0.22 4.79 0.70 -89.63 -0.06 4.73 16 12 O -0.56 -12.13 8.52 -35.23 -0.30 -12.43 16 13 C -0.55 -14.46 8.89 -34.44 -0.31 -14.77 16 14 H 0.08 2.32 8.00 -52.48 -0.42 1.90 16 15 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 16 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 17 Si 0.95 23.17 24.93 -169.99 -4.24 18.94 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.33 -8.18 7.11 56.52 0.40 -7.78 16 20 H -0.27 -6.39 5.42 56.52 0.31 -6.08 16 21 C 0.11 2.23 6.07 -2.54 -0.02 2.21 16 22 C -0.15 -1.11 5.15 -90.62 -0.47 -1.58 16 23 C -0.18 -1.22 10.18 -26.71 -0.27 -1.49 16 24 C -0.18 -1.38 9.67 -26.71 -0.26 -1.64 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.48 7.18 -51.93 -0.37 0.11 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.81 7.12 -51.93 -0.37 0.44 16 30 H 0.39 4.48 6.64 -40.82 -0.27 4.21 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.56 6.65 -51.93 -0.35 1.21 16 34 H 0.09 1.60 8.03 -51.93 -0.42 1.18 16 35 H 0.37 7.29 8.98 45.56 0.41 7.70 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 1.47 8.02 -51.92 -0.42 1.05 16 38 H 0.07 1.45 7.98 -51.93 -0.41 1.04 16 39 H 0.11 0.78 8.11 -51.93 -0.42 0.36 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 42 H 0.10 0.79 7.58 -51.93 -0.39 0.40 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -32.11 341.03 -8.21 -40.32 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.45 Total: 8.09 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.30 Total: 1.02 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.15 Total: -48.01 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.21 Total: -25.49 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.24 Total: 18.94 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.11 -8.21 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591929896.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.562 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds