Wall clock time and date at job start Tue Mar 31 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 N 1.46500 * 109.47177 * 65.00225 * 4 2 1 6 6 C 1.34778 * 120.00010 * 179.97438 * 5 4 2 7 7 O 1.21583 * 120.00292 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99887 * 179.97438 * 6 5 4 9 9 C 1.47022 * 125.64987 * 0.02659 * 8 6 5 10 10 C 1.54323 * 107.27278 * 181.02409 * 9 8 6 11 11 C 1.55160 * 102.94332 * 22.18727 * 10 9 8 12 12 O 1.42902 * 110.99895 * 82.57542 * 11 10 9 13 13 C 1.50690 * 111.00553 * 206.38902 * 11 10 9 14 14 H 1.08006 * 120.00563 * 359.97438 * 13 11 10 15 15 C 1.37880 * 120.00336 * 180.02562 * 13 11 10 16 16 N 1.31522 * 119.99726 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00384 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46571 * 90.00323 * 17 15 13 19 19 H 1.48503 * 109.47157 * 209.99872 * 17 15 13 20 20 H 1.48493 * 109.47048 * 330.00323 * 17 15 13 21 21 C 1.47427 * 125.64709 * 179.71337 * 8 6 5 22 22 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 23 23 C 1.52996 * 117.49930 * 248.74579 * 22 2 1 24 24 C 1.53005 * 117.49949 * 180.08390 * 22 2 1 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46738 * 184.99930 * 4 2 1 29 29 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 30 30 H 0.97003 * 120.00376 * 359.97438 * 5 4 2 31 31 H 1.09004 * 109.87778 * 300.43642 * 9 8 6 32 32 H 1.08998 * 109.88354 * 61.60505 * 9 8 6 33 33 H 1.08998 * 110.72437 * 140.55194 * 10 9 8 34 34 H 1.09008 * 110.71748 * 263.65127 * 10 9 8 35 35 H 0.96699 * 113.99182 * 180.02562 * 12 11 10 36 36 H 0.96997 * 120.00207 * 180.02562 * 16 15 13 37 37 H 1.09003 * 110.36573 * 274.74801 * 21 8 6 38 38 H 1.08999 * 110.36456 * 37.07437 * 21 8 6 39 39 H 1.09007 * 115.55242 * 34.41619 * 22 2 1 40 40 H 1.09002 * 117.49978 * 359.97438 * 23 22 2 41 41 H 1.08999 * 117.49879 * 145.02328 * 23 22 2 42 42 H 1.08994 * 117.49920 * 214.98035 * 24 22 2 43 43 H 1.09002 * 117.49617 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.6524 0.0353 -2.4424 6 6 1.9963 -0.4131 -3.6659 7 8 2.6286 -1.4454 -3.7796 8 7 1.6393 0.2827 -4.7636 9 6 0.8780 1.5405 -4.7708 10 6 0.6852 1.9509 -6.2459 11 6 0.8583 0.6090 -7.0055 12 8 -0.3569 -0.1429 -7.0000 13 6 1.3384 0.8439 -8.4144 14 1 1.5128 1.8505 -8.7648 15 6 1.5542 -0.2262 -9.2566 16 7 1.3405 -1.4520 -8.8305 17 14 2.1488 0.0650 -11.0034 18 1 3.6336 0.0643 -11.0273 19 1 1.6390 -1.0148 -11.8863 20 1 1.6465 1.3768 -11.4850 21 6 1.9530 -0.0880 -6.1556 22 6 2.0401 -0.7212 1.2492 23 6 2.7394 0.1231 2.3164 24 6 3.5551 -0.8264 1.4353 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1263 -0.7995 -1.2056 29 1 1.6053 -1.7198 -1.2952 30 1 1.1482 0.8591 -2.3518 31 1 -0.0925 1.3890 -4.2982 32 1 1.4343 2.3135 -4.2407 33 1 -0.3131 2.3584 -6.4055 34 1 1.4466 2.6697 -6.5489 35 1 -0.2972 -0.9899 -7.4627 36 1 1.4926 -2.2048 -9.4228 37 1 2.9417 0.2783 -6.4320 38 1 1.8991 -1.1694 -6.2815 39 1 1.4319 -1.5595 1.5894 40 1 2.8365 1.1924 2.1283 41 1 2.5916 -0.1599 3.3586 42 1 3.9436 -1.7334 1.8981 43 1 4.1885 -0.3820 0.6674 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591929897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:04 Heat of formation + Delta-G solvation = -63.569400 kcal Electronic energy + Delta-G solvation = -22775.076440 eV Core-core repulsion = 19434.652654 eV Total energy + Delta-G solvation = -3340.423786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.71103 -38.44205 -37.21818 -34.73594 -34.20135 -32.12325 -31.76582 -29.93899 -27.83445 -26.52972 -24.83224 -23.19929 -22.58699 -22.09570 -20.25231 -19.61225 -19.26649 -17.54558 -17.05303 -15.86898 -15.80023 -15.31842 -15.01909 -14.64294 -14.49108 -14.12898 -14.02403 -13.29001 -12.98543 -12.81076 -12.78563 -12.60112 -12.03108 -11.81383 -11.65578 -11.60253 -11.42790 -11.38202 -11.03697 -11.01905 -10.76003 -10.56536 -10.48001 -10.40905 -10.16426 -10.14363 -9.57490 -9.36579 -8.74969 -8.66030 -8.33557 -7.63072 -6.26878 -4.36461 3.15417 3.22612 3.29457 3.32199 3.59063 3.81327 4.26536 4.35789 4.56250 4.62555 4.70852 4.89437 5.00171 5.05412 5.15514 5.36090 5.43380 5.44111 5.63609 5.66664 5.67300 5.73091 5.82403 5.86477 5.88604 5.93702 6.03309 6.06085 6.16828 6.22101 6.53646 6.73342 6.84376 6.90357 7.00769 7.26379 7.35670 7.68633 7.76854 8.03128 8.58557 8.68241 9.19615 9.33299 9.49181 10.80352 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036923 B = 0.003431 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.154246 B = 8159.736869 C = 8437.659194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 H 0.075 0.925 4 C 0.147 3.853 5 N -0.752 5.752 6 C 0.715 3.285 7 O -0.598 6.598 8 N -0.628 5.628 9 C 0.106 3.894 10 C -0.116 4.116 11 C 0.249 3.751 12 O -0.584 6.584 13 C -0.538 4.538 14 H 0.067 0.933 15 C 0.070 3.930 16 N -0.894 5.894 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.112 3.888 22 C -0.144 4.144 23 C -0.179 4.179 24 C -0.180 4.180 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.391 0.609 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.386 0.614 36 H 0.271 0.729 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.282 4.853 17.481 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.091 4.091 3 H 0.094 0.906 4 C 0.022 3.978 5 N -0.409 5.409 6 C 0.417 3.583 7 O -0.477 6.477 8 N -0.365 5.365 9 C -0.017 4.017 10 C -0.154 4.154 11 C 0.208 3.792 12 O -0.394 6.394 13 C -0.576 4.576 14 H 0.085 0.915 15 C -0.133 4.133 16 N -0.533 5.533 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.010 4.010 22 C -0.163 4.163 23 C -0.216 4.216 24 C -0.217 4.217 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.238 0.762 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.007 4.349 17.726 18.251 hybrid contribution 0.358 -0.031 -1.123 1.180 sum 0.365 4.317 16.602 17.158 Atomic orbital electron populations 1.21814 0.94232 1.02416 1.01748 1.20954 0.96444 0.99171 0.92559 0.90643 1.21119 0.99704 0.94961 0.81990 1.45138 1.62233 1.28833 1.04672 1.15529 0.80056 0.83029 0.79663 1.90879 1.46348 1.24981 1.85505 1.47894 1.57126 1.24883 1.06575 1.21910 0.94725 0.85769 0.99329 1.22596 1.01870 0.98932 0.92038 1.19626 0.81582 0.86020 0.91936 1.86056 1.35830 1.37540 1.80004 1.21497 1.45960 0.93726 0.96411 0.91497 1.25093 0.93999 0.94941 0.99257 1.69573 1.48507 0.98328 1.36914 0.86383 0.78969 0.78082 0.83350 1.20409 1.20991 1.19707 1.23182 0.99514 1.02185 0.76138 1.22238 0.95156 1.01911 0.97003 1.23016 1.04812 0.97592 0.96161 1.22991 0.93881 1.01757 1.03076 0.92438 0.92349 0.92265 0.91885 0.91844 0.77469 0.92716 0.93281 0.90812 0.90526 0.76178 0.91875 0.92556 0.90151 0.87539 0.88849 0.88941 0.88745 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.05 37.16 0.34 -0.97 16 2 C -0.07 -0.69 2.58 -90.62 -0.23 -0.93 16 3 H 0.08 0.69 7.90 -51.93 -0.41 0.28 16 4 C 0.15 1.95 4.98 -4.04 -0.02 1.93 16 5 N -0.75 -11.60 5.24 -65.23 -0.34 -11.94 16 6 C 0.72 14.97 8.49 -86.92 -0.74 14.23 16 7 O -0.60 -14.93 16.60 5.29 0.09 -14.85 16 8 N -0.63 -13.28 3.32 -176.09 -0.59 -13.87 16 9 C 0.11 1.87 6.15 -3.06 -0.02 1.85 16 10 C -0.12 -2.30 6.12 -24.90 -0.15 -2.45 16 11 C 0.25 6.08 0.89 -89.51 -0.08 6.00 16 12 O -0.58 -15.16 13.19 -35.23 -0.46 -15.62 16 13 C -0.54 -13.99 8.25 -34.44 -0.28 -14.28 16 14 H 0.07 1.70 7.77 -52.48 -0.41 1.29 16 15 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 16 N -0.89 -24.05 10.72 55.43 0.59 -23.46 16 17 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.11 2.75 5.65 -2.41 -0.01 2.73 16 22 C -0.14 -1.24 5.15 -90.62 -0.47 -1.71 16 23 C -0.18 -1.36 10.18 -26.69 -0.27 -1.63 16 24 C -0.18 -1.54 9.68 -26.69 -0.26 -1.80 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.55 7.18 -51.93 -0.37 0.18 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.89 7.13 -51.93 -0.37 0.52 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.39 5.08 6.64 -40.82 -0.27 4.80 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.08 1.42 8.02 -51.92 -0.42 1.00 16 35 H 0.39 10.42 6.93 45.56 0.32 10.73 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.06 1.41 8.04 -51.93 -0.42 1.00 16 38 H 0.08 2.24 7.64 -51.93 -0.40 1.84 16 39 H 0.11 0.88 8.11 -51.93 -0.42 0.46 16 40 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.89 7.59 -51.93 -0.39 0.50 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -30.25 346.83 -9.30 -39.54 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -6.50 Total: 14.89 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -2.29 Total: 4.72 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.33 Total: -49.27 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.38 Total: -30.47 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.25 -9.30 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591929897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.028 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds