Wall clock time and date at job start Tue Mar 31 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 5 5 N 1.46499 * 109.46840 * 65.00000 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21590 * 120.00297 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99768 * 180.02562 * 6 5 4 9 9 C 1.47021 * 125.65051 * 359.69426 * 8 6 5 10 10 C 1.54325 * 107.26415 * 178.84834 * 9 8 6 11 11 C 1.55151 * 103.02398 * 338.14046 * 10 9 8 12 12 O 1.42903 * 111.00780 * 277.23142 * 11 10 9 13 13 C 1.50703 * 111.03847 * 153.39506 * 11 10 9 14 14 H 1.08001 * 120.00381 * 6.33172 * 13 11 10 15 15 C 1.37882 * 119.99887 * 186.33148 * 13 11 10 16 16 N 1.31512 * 120.00194 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99699 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47568 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47335 * 120.00325 * 17 15 13 20 20 H 1.48507 * 109.47042 * 240.00005 * 17 15 13 21 21 C 1.47423 * 125.64261 * 179.97438 * 8 6 5 22 22 C 1.53006 * 109.47155 * 119.99883 * 2 1 3 23 23 C 1.52995 * 117.49873 * 248.74741 * 22 2 1 24 24 C 1.52995 * 117.49950 * 180.08682 * 22 2 1 25 25 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 26 26 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 28 28 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 29 29 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 30 30 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 31 31 H 1.09002 * 109.87993 * 298.39516 * 9 8 6 32 32 H 1.09001 * 109.87651 * 59.55698 * 9 8 6 33 33 H 1.09002 * 110.85329 * 219.66968 * 10 9 8 34 34 H 1.09003 * 110.51494 * 96.45588 * 10 9 8 35 35 H 0.96693 * 114.00163 * 173.64968 * 12 11 10 36 36 H 0.96994 * 120.00002 * 179.97438 * 16 15 13 37 37 H 1.08999 * 110.36961 * 322.92917 * 21 8 6 38 38 H 1.09005 * 110.36791 * 85.14749 * 21 8 6 39 39 H 1.09001 * 115.54725 * 34.41488 * 22 2 1 40 40 H 1.08997 * 117.50240 * 359.97438 * 23 22 2 41 41 H 1.09002 * 117.50256 * 145.01913 * 23 22 2 42 42 H 1.09001 * 117.49609 * 214.97969 * 24 22 2 43 43 H 1.09004 * 117.50084 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 1.9956 -0.4137 -3.6659 7 8 2.6264 -1.4469 -3.7796 8 7 1.6394 0.2826 -4.7636 9 6 0.8741 1.5379 -4.7711 10 6 0.7320 1.9789 -6.2432 11 6 1.9035 1.2414 -6.9438 12 8 3.1267 1.9650 -6.7947 13 6 1.5969 0.9987 -8.3992 14 1 0.7049 1.4184 -8.8405 15 6 2.4551 0.2409 -9.1675 16 7 3.5416 -0.2697 -8.6304 17 14 2.0754 -0.0592 -10.9717 18 1 0.8045 0.6204 -11.3299 19 1 3.1779 0.4821 -11.8063 20 1 1.9422 -1.5184 -11.2134 21 6 1.9479 -0.0914 -6.1558 22 6 2.0400 -0.7213 1.2493 23 6 2.7392 0.1231 2.3165 24 6 3.5549 -0.8263 1.4354 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.1263 -0.7996 -1.2055 29 1 1.6053 -1.7198 -1.2951 30 1 1.1488 0.8594 -2.3518 31 1 -0.1110 1.3740 -4.3343 32 1 1.4095 2.3018 -4.2072 33 1 0.8448 3.0589 -6.3374 34 1 -0.2261 1.6535 -6.6486 35 1 3.9036 1.4977 -7.1308 36 1 4.1451 -0.8031 -9.1708 37 1 2.9411 -0.5361 -6.2181 38 1 1.1981 -0.7845 -6.5374 39 1 1.4317 -1.5594 1.5894 40 1 2.8363 1.1923 2.1285 41 1 2.5915 -0.1598 3.3587 42 1 3.9434 -1.7335 1.8983 43 1 4.1883 -0.3820 0.6676 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591929898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:06 Heat of formation + Delta-G solvation = -63.471141 kcal Electronic energy + Delta-G solvation = -22790.369797 eV Core-core repulsion = 19449.950272 eV Total energy + Delta-G solvation = -3340.419525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.71100 -38.44248 -37.22918 -34.73180 -34.17410 -32.20132 -31.76616 -29.93907 -27.79618 -26.53387 -24.83209 -23.20126 -22.57781 -22.09614 -20.25337 -19.62936 -19.26656 -17.53696 -16.98538 -15.91485 -15.79540 -15.25381 -15.07167 -14.65285 -14.41885 -14.24280 -13.98180 -13.30416 -12.98936 -12.85005 -12.74113 -12.62000 -12.02792 -11.80392 -11.64902 -11.63346 -11.44431 -11.33965 -11.05438 -11.01062 -10.78481 -10.57020 -10.44151 -10.40244 -10.16425 -10.14273 -9.55878 -9.33478 -8.74652 -8.67134 -8.31872 -7.63705 -6.24763 -4.34533 3.15702 3.22742 3.30632 3.33853 3.59870 3.81755 4.27699 4.36302 4.56297 4.63172 4.71576 4.89524 5.02255 5.05288 5.15225 5.36154 5.43624 5.44789 5.62780 5.65615 5.66838 5.72998 5.79722 5.86314 5.88470 5.93621 6.02299 6.05482 6.16949 6.21351 6.53842 6.73328 6.84583 6.92090 7.01873 7.27319 7.36488 7.70326 7.77440 8.06696 8.59252 8.70525 9.20079 9.33072 9.41222 10.82257 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035664 B = 0.003467 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.908769 B = 8075.344923 C = 8342.764643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 H 0.076 0.924 4 C 0.147 3.853 5 N -0.752 5.752 6 C 0.715 3.285 7 O -0.597 6.597 8 N -0.629 5.629 9 C 0.106 3.894 10 C -0.116 4.116 11 C 0.248 3.752 12 O -0.583 6.583 13 C -0.537 4.537 14 H 0.067 0.933 15 C 0.071 3.929 16 N -0.891 5.891 17 Si 0.903 3.097 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.114 3.886 22 C -0.145 4.145 23 C -0.179 4.179 24 C -0.180 4.180 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.391 0.609 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.381 0.619 36 H 0.269 0.731 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.993 2.124 17.297 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 H 0.094 0.906 4 C 0.022 3.978 5 N -0.409 5.409 6 C 0.417 3.583 7 O -0.476 6.476 8 N -0.366 5.366 9 C -0.018 4.018 10 C -0.154 4.154 11 C 0.207 3.793 12 O -0.391 6.391 13 C -0.575 4.575 14 H 0.085 0.915 15 C -0.133 4.133 16 N -0.530 5.530 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.008 4.008 22 C -0.163 4.163 23 C -0.216 4.216 24 C -0.217 4.217 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.231 0.769 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.741 1.630 17.490 18.195 hybrid contribution -0.015 -0.297 -1.103 1.143 sum -4.756 1.333 16.387 17.115 Atomic orbital electron populations 1.21806 0.94312 1.02299 1.01717 1.20958 0.96368 0.99274 0.92583 0.90576 1.21118 0.99823 0.94834 0.81987 1.45141 1.62332 1.28745 1.04673 1.15530 0.79987 0.83120 0.79649 1.90883 1.46137 1.25120 1.85505 1.47935 1.57318 1.24686 1.06663 1.21914 0.94102 0.86352 0.99422 1.22583 0.99728 1.00823 0.92218 1.19639 0.81918 0.85525 0.92213 1.86096 1.18498 1.48917 1.85622 1.21489 1.08956 1.32965 0.94127 0.91517 1.25088 0.94663 0.94293 0.99243 1.69731 1.12248 1.34255 1.36737 0.86359 0.78486 0.77998 0.84099 1.19616 1.20786 1.20792 1.23107 1.01740 1.00025 0.75903 1.22230 0.95200 1.01901 0.97010 1.23016 1.04802 0.97634 0.96130 1.22996 0.93849 1.01753 1.03092 0.92412 0.92332 0.92440 0.91833 0.91900 0.77481 0.93229 0.92775 0.90819 0.90465 0.76932 0.92073 0.89702 0.92574 0.87579 0.88821 0.88950 0.88743 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.05 37.15 0.34 -0.90 16 2 C -0.07 -0.70 2.58 -90.62 -0.23 -0.93 16 3 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 4 C 0.15 1.95 4.98 -4.04 -0.02 1.93 16 5 N -0.75 -11.59 5.24 -65.22 -0.34 -11.93 16 6 C 0.72 14.95 8.49 -86.91 -0.74 14.22 16 7 O -0.60 -14.93 16.60 5.29 0.09 -14.84 16 8 N -0.63 -13.28 3.33 -176.24 -0.59 -13.87 16 9 C 0.11 1.85 6.15 -3.06 -0.02 1.83 16 10 C -0.12 -2.28 6.13 -24.90 -0.15 -2.43 16 11 C 0.25 6.01 0.87 -89.63 -0.08 5.94 16 12 O -0.58 -14.92 13.16 -35.23 -0.46 -15.38 16 13 C -0.54 -14.00 8.27 -34.44 -0.28 -14.29 16 14 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 15 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 16 N -0.89 -24.02 10.69 55.43 0.59 -23.43 16 17 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.11 2.80 5.38 -2.54 -0.01 2.79 16 22 C -0.14 -1.25 5.15 -90.62 -0.47 -1.72 16 23 C -0.18 -1.38 10.18 -26.70 -0.27 -1.65 16 24 C -0.18 -1.58 9.68 -26.70 -0.26 -1.84 16 25 H 0.06 0.51 7.18 -51.93 -0.37 0.14 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.92 7.13 -51.93 -0.37 0.55 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.39 5.07 6.64 -40.82 -0.27 4.80 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 35 H 0.38 10.05 7.56 45.56 0.34 10.40 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.08 2.36 7.33 -51.93 -0.38 1.98 16 38 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 39 H 0.11 0.86 8.11 -51.93 -0.42 0.44 16 40 H 0.09 0.70 8.05 -51.93 -0.42 0.29 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.10 0.93 7.59 -51.93 -0.39 0.54 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -30.29 346.86 -9.25 -39.54 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -6.45 Total: 14.55 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.29 Total: 4.69 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.34 Total: -49.22 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.38 Total: -30.22 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.29 -9.25 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591929898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.927 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds