Wall clock time and date at job start Tue Mar 31 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46861 * 2 1 4 4 N 1.46499 * 109.47101 * 239.99992 * 2 1 3 5 5 C 1.34783 * 119.99736 * 85.00310 * 4 2 1 6 6 O 1.21579 * 120.00192 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99445 * 179.97438 * 5 4 2 8 8 C 1.47425 * 125.65337 * 359.69009 * 7 5 4 9 9 C 1.55127 * 104.72398 * 155.81253 * 8 7 5 10 10 C 1.55160 * 101.48181 * 37.30037 * 9 8 7 11 11 O 1.42897 * 110.72466 * 82.69247 * 10 9 8 12 12 C 1.50705 * 110.87096 * 205.89720 * 10 9 8 13 13 H 1.08001 * 120.00444 * 119.16823 * 12 10 9 14 14 C 1.37883 * 120.00002 * 299.16625 * 12 10 9 15 15 N 1.31504 * 120.00337 * 175.26765 * 14 12 10 16 16 Si 1.86801 * 119.99798 * 355.26956 * 14 12 10 17 17 H 1.48502 * 109.47325 * 94.86445 * 16 14 12 18 18 H 1.48493 * 109.47151 * 214.87042 * 16 14 12 19 19 H 1.48504 * 109.47395 * 334.86880 * 16 14 12 20 20 C 1.47021 * 125.64370 * 179.97438 * 7 5 4 21 21 C 1.52999 * 109.47300 * 120.00112 * 2 1 3 22 22 C 1.53778 * 113.61870 * 175.25501 * 21 2 1 23 23 C 1.53785 * 87.08311 * 139.97830 * 22 21 2 24 24 C 1.53777 * 87.17082 * 334.52603 * 23 22 21 25 25 H 1.09006 * 109.47155 * 64.98792 * 1 2 3 26 26 H 1.08997 * 109.47001 * 184.98867 * 1 2 3 27 27 H 1.08998 * 109.47460 * 304.99317 * 1 2 3 28 28 H 0.96996 * 120.00030 * 265.00024 * 4 2 1 29 29 H 1.08993 * 110.36633 * 274.74935 * 8 7 5 30 30 H 1.09002 * 110.36383 * 37.06975 * 8 7 5 31 31 H 1.08997 * 111.19872 * 279.19729 * 9 8 7 32 32 H 1.09002 * 110.90300 * 155.27240 * 9 8 7 33 33 H 0.96697 * 114.00433 * 185.01850 * 11 10 9 34 34 H 0.97002 * 120.00757 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.88496 * 300.44002 * 20 7 5 36 36 H 1.09002 * 109.88359 * 61.45336 * 20 7 5 37 37 H 1.08998 * 112.85002 * 44.05025 * 21 2 1 38 38 H 1.08999 * 113.61323 * 25.43109 * 22 21 2 39 39 H 1.09000 * 113.61440 * 254.53208 * 22 21 2 40 40 H 1.09003 * 113.61061 * 89.11502 * 23 22 21 41 41 H 1.08993 * 113.61445 * 219.93222 * 23 22 21 42 42 H 1.09009 * 113.61594 * 140.02391 * 24 23 22 43 43 H 1.09000 * 113.62014 * 270.92124 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8575 1.1614 -2.4118 7 7 2.5968 -0.6534 -3.4574 8 6 2.9882 -2.0729 -3.5305 9 6 2.8173 -2.4526 -5.0248 10 6 3.2883 -1.1530 -5.7296 11 8 4.7132 -1.1213 -5.8321 12 6 2.6546 -1.0204 -7.0904 13 1 2.0226 -0.1730 -7.3116 14 6 2.8818 -1.9808 -8.0533 15 7 2.2562 -1.9150 -9.2082 16 14 4.0782 -3.3755 -7.7173 17 1 3.3323 -4.5576 -7.2158 18 1 4.7867 -3.7330 -8.9724 19 1 5.0668 -2.9445 -6.6964 20 6 2.7838 -0.0441 -4.7823 21 6 2.0400 -0.7213 1.2492 22 6 3.5692 -0.8786 1.2886 23 6 3.4849 -0.5571 2.7901 24 6 2.1819 0.1975 2.4776 25 1 -0.3634 0.4345 -0.9313 26 1 -0.3633 -1.0237 0.0894 27 1 -0.3634 0.5893 0.8419 28 1 2.2490 -1.6317 -1.1526 29 1 4.0261 -2.1965 -3.2215 30 1 2.3312 -2.6801 -2.9077 31 1 1.7752 -2.6688 -5.2598 32 1 3.4583 -3.2941 -5.2880 33 1 5.0632 -0.2964 -6.1954 34 1 2.4157 -2.5909 -9.8855 35 1 1.8353 0.3511 -5.1459 36 1 3.5201 0.7574 -4.7211 37 1 1.5005 -1.6459 1.4540 38 1 4.1009 -0.1235 0.7096 39 1 3.9094 -1.8924 1.0775 40 1 3.3404 -1.4367 3.4175 41 1 4.2889 0.0880 3.1443 42 1 1.4028 0.0518 3.2260 43 1 2.3349 1.2462 2.2232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591995752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:53 Heat of formation + Delta-G solvation = -75.967927 kcal Electronic energy + Delta-G solvation = -23168.260550 eV Core-core repulsion = 19827.299124 eV Total energy + Delta-G solvation = -3340.961426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.49631 -40.09812 -39.05499 -36.15872 -35.76257 -34.50669 -32.35046 -31.01288 -29.88626 -27.22699 -26.53164 -26.24398 -24.19585 -22.56488 -21.51925 -21.11784 -20.33866 -19.54306 -18.92103 -17.49672 -16.95558 -16.75584 -16.55026 -16.26192 -15.95640 -15.29893 -15.08231 -15.01786 -14.71737 -14.23543 -14.02830 -13.89939 -13.54057 -13.29881 -13.21047 -13.16974 -13.03896 -12.83793 -12.72218 -12.36068 -12.22980 -12.13073 -11.82336 -11.44129 -11.34843 -11.09773 -11.08502 -10.89883 -10.78870 -10.25983 -10.16908 -9.45704 -8.35136 -6.51483 1.39778 1.49191 1.60910 1.76047 2.13475 2.42643 2.98681 3.00936 3.56278 3.67302 3.74897 3.78509 3.84227 4.03086 4.04325 4.26238 4.30902 4.33603 4.42853 4.47123 4.55651 4.75649 4.80660 4.89856 4.91073 4.91361 4.94973 5.03538 5.08531 5.11400 5.13144 5.15125 5.27520 5.37459 5.45126 5.54545 5.61010 5.67262 6.07514 6.11880 6.59358 7.01745 7.12554 7.30165 7.56373 8.79189 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032131 B = 0.003999 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.210524 B = 7000.864730 C = 7352.354192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.168 3.832 3 H 0.060 0.940 4 N -0.722 5.722 5 C 0.715 3.285 6 O -0.641 6.641 7 N -0.632 5.632 8 C 0.111 3.889 9 C -0.124 4.124 10 C 0.219 3.781 11 O -0.569 6.569 12 C -0.554 4.554 13 H 0.032 0.968 14 C 0.034 3.966 15 N -0.939 5.939 16 Si 0.933 3.067 17 H -0.274 1.274 18 H -0.308 1.308 19 H -0.193 1.193 20 C 0.123 3.877 21 C -0.112 4.112 22 C -0.138 4.138 23 C -0.137 4.137 24 C -0.129 4.129 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.407 0.593 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.375 0.625 34 H 0.268 0.732 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.114 0.886 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 -3.570 24.717 25.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.079 0.921 4 N -0.378 5.378 5 C 0.417 3.583 6 O -0.523 6.523 7 N -0.369 5.369 8 C -0.011 4.011 9 C -0.162 4.162 10 C 0.179 3.821 11 O -0.376 6.376 12 C -0.591 4.591 13 H 0.050 0.950 14 C -0.166 4.166 15 N -0.577 5.577 16 Si 0.758 3.242 17 H -0.200 1.200 18 H -0.236 1.236 19 H -0.115 1.115 20 C -0.001 4.001 21 C -0.131 4.131 22 C -0.175 4.175 23 C -0.174 4.174 24 C -0.167 4.167 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.244 0.756 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.224 0.776 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.132 0.868 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.055 -3.328 24.876 25.182 hybrid contribution 0.120 0.097 -1.369 1.378 sum 2.175 -3.231 23.507 23.827 Atomic orbital electron populations 1.22151 0.95174 1.02827 1.01467 1.20923 0.93988 0.95994 0.82742 0.92138 1.45045 1.71047 1.14025 1.07664 1.15665 0.78056 0.84152 0.80451 1.90849 1.59784 1.16537 1.85155 1.47627 1.68219 1.12378 1.08706 1.22434 1.01239 0.80445 0.96948 1.22988 1.01684 0.97356 0.94122 1.19786 0.79403 0.91789 0.91150 1.86503 1.21561 1.42616 1.86960 1.21426 1.31105 1.09176 0.97429 0.95012 1.25832 0.96331 1.00473 0.93940 1.70077 1.43296 1.36792 1.07562 0.86211 0.81350 0.77985 0.78700 1.19994 1.23645 1.11455 1.22304 0.99626 0.96655 0.81521 1.22958 0.96792 1.00259 0.93056 1.22859 0.95365 1.02011 0.97295 1.22812 0.97723 1.00901 0.95954 1.22946 0.98642 0.98361 0.96701 0.95354 0.91023 0.90079 0.75629 0.89856 0.88276 0.90516 0.90042 0.77600 0.92322 0.94151 0.92741 0.86801 0.91995 0.90545 0.88716 0.91511 0.89767 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 9.48 71.98 0.68 -2.58 16 2 C 0.17 3.63 2.42 44.99 0.11 3.74 16 3 H 0.06 1.64 7.29 -2.39 -0.02 1.63 16 4 N -0.72 -18.04 4.67 -457.82 -2.14 -20.18 16 5 C 0.71 25.56 8.45 179.05 1.51 27.08 16 6 O -0.64 -28.52 16.33 -3.97 -0.06 -28.59 16 7 N -0.63 -22.72 3.32 -829.32 -2.76 -25.48 16 8 C 0.11 3.24 6.58 86.93 0.57 3.82 16 9 C -0.12 -4.62 5.05 32.06 0.16 -4.46 16 10 C 0.22 9.55 0.67 -10.35 -0.01 9.55 16 11 O -0.57 -22.94 9.93 -148.98 -1.48 -24.41 16 12 C -0.55 -30.31 8.81 25.60 0.23 -30.08 16 13 H 0.03 1.98 7.83 -2.91 -0.02 1.95 16 14 C 0.03 1.92 5.44 84.66 0.46 2.38 16 15 N -0.94 -57.28 13.96 21.45 0.30 -56.98 16 16 Si 0.93 42.12 24.26 68.60 1.66 43.79 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.31 -14.36 7.11 99.48 0.71 -13.66 16 19 H -0.19 -8.01 5.13 99.48 0.51 -7.50 16 20 C 0.12 5.23 6.21 86.73 0.54 5.76 16 21 C -0.11 -1.57 3.24 -10.18 -0.03 -1.60 16 22 C -0.14 -2.00 7.28 31.12 0.23 -1.78 16 23 C -0.14 -1.57 8.07 31.12 0.25 -1.32 16 24 C -0.13 -1.60 7.65 31.21 0.24 -1.36 16 25 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.41 7.85 7.07 -92.71 -0.66 7.19 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.10 2.15 7.29 -2.39 -0.02 2.13 16 31 H 0.08 3.03 8.04 -2.39 -0.02 3.01 16 32 H 0.08 2.94 5.35 -2.39 -0.01 2.93 16 33 H 0.38 13.42 9.08 -74.06 -0.67 12.75 16 34 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.04 1.93 7.67 -2.39 -0.02 1.91 16 36 H 0.05 2.28 8.06 -2.39 -0.02 2.26 16 37 H 0.11 1.22 8.13 -2.39 -0.02 1.20 16 38 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.07 1.07 7.90 -2.39 -0.02 1.06 16 Total: -1.00 -72.33 336.41 -0.05 -72.38 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -0.51 Total: 30.34 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 4.94 Total: 9.13 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -4.60 Total: -102.64 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -1.54 Total: -53.00 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.66 Total: 43.79 kcal Total: -72.33 -0.05 -72.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591995752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.587 kcal (2) G-P(sol) polarization free energy of solvation -72.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds