Wall clock time and date at job start Tue Mar 31 2020 05:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46981 * 2 1 4 4 N 1.46495 * 109.47280 * 239.99542 * 2 1 3 5 5 C 1.34779 * 119.99905 * 84.99787 * 4 2 1 6 6 O 1.21586 * 119.99798 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99859 * 180.02562 * 5 4 2 8 8 C 1.47017 * 125.64842 * 0.02563 * 7 5 4 9 9 C 1.54326 * 107.27135 * 178.90082 * 8 7 5 10 10 C 1.55159 * 102.94213 * 337.81214 * 9 8 7 11 11 O 1.42902 * 110.99974 * 277.38757 * 10 9 8 12 12 C 1.50698 * 111.00704 * 153.57646 * 10 9 8 13 13 H 1.08000 * 119.99830 * 3.17777 * 12 10 9 14 14 C 1.37879 * 120.00044 * 182.90314 * 12 10 9 15 15 N 1.31515 * 120.00082 * 0.27528 * 14 12 10 16 16 Si 1.86797 * 119.99763 * 180.27343 * 14 12 10 17 17 H 1.48500 * 109.47253 * 60.00270 * 16 14 12 18 18 H 1.48503 * 109.47225 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47512 * 299.99828 * 16 14 12 20 20 C 1.47465 * 125.62830 * 179.97438 * 7 5 4 21 21 C 1.53003 * 109.46814 * 119.99520 * 2 1 3 22 22 C 1.53784 * 113.61656 * 281.80190 * 21 2 1 23 23 C 1.53784 * 87.08139 * 220.02051 * 22 21 2 24 24 C 1.53785 * 113.61180 * 184.30386 * 21 2 1 25 25 H 1.08999 * 109.47252 * 58.74511 * 1 2 3 26 26 H 1.08996 * 109.47457 * 178.74886 * 1 2 3 27 27 H 1.09004 * 109.47239 * 298.75301 * 1 2 3 28 28 H 0.97002 * 120.00289 * 265.00112 * 4 2 1 29 29 H 1.09004 * 109.88347 * 59.48970 * 8 7 5 30 30 H 1.09000 * 109.88587 * 298.31941 * 8 7 5 31 31 H 1.09002 * 110.72422 * 219.44839 * 9 8 7 32 32 H 1.09000 * 110.71791 * 96.17086 * 9 8 7 33 33 H 0.96701 * 113.99615 * 176.81676 * 11 10 9 34 34 H 0.96994 * 119.99902 * 179.97438 * 15 14 12 35 35 H 1.08999 * 110.35280 * 85.32183 * 20 7 5 36 36 H 1.09008 * 110.40123 * 322.98948 * 20 7 5 37 37 H 1.09004 * 112.84970 * 53.11071 * 21 2 1 38 38 H 1.09000 * 113.61128 * 334.57124 * 22 21 2 39 39 H 1.08999 * 113.61101 * 105.47494 * 22 21 2 40 40 H 1.09003 * 113.61301 * 270.88578 * 23 22 21 41 41 H 1.08997 * 113.68594 * 139.99383 * 23 22 21 42 42 H 1.08996 * 113.61490 * 254.53238 * 24 21 2 43 43 H 1.08998 * 113.61454 * 25.44071 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8582 1.1614 -2.4116 7 7 2.5958 -0.6540 -3.4576 8 6 2.9786 -2.0715 -3.5322 9 6 3.4000 -2.3562 -4.9893 10 6 2.6932 -1.2256 -5.7827 11 8 1.3318 -1.5646 -6.0546 12 6 3.4345 -0.9154 -7.0576 13 1 4.3038 -1.4948 -7.3313 14 6 2.9995 0.1043 -7.8773 15 7 1.9409 0.8099 -7.5440 16 14 3.9140 0.4837 -9.4613 17 1 3.9000 -0.7134 -10.3399 18 1 3.2510 1.6162 -10.1566 19 1 5.3182 0.8506 -9.1467 20 6 2.7831 -0.0425 -4.7864 21 6 2.0399 -0.7212 1.2493 22 6 1.9735 0.1350 2.5251 23 6 3.3384 -0.4640 2.9037 24 6 3.5700 -0.6858 1.3996 25 1 -0.3634 0.5332 -0.8785 26 1 -0.3634 -1.0274 -0.0224 27 1 -0.3634 0.4944 0.9010 28 1 2.2490 -1.6319 -1.1525 29 1 2.1294 -2.6995 -3.2625 30 1 3.8143 -2.2657 -2.8599 31 1 3.0419 -3.3344 -5.3102 32 1 4.4822 -2.2855 -5.0985 33 1 0.8357 -0.8680 -6.5059 34 1 1.6352 1.5275 -8.1205 35 1 3.7614 0.4339 -4.8500 36 1 1.9936 0.6823 -4.9858 37 1 1.6125 -1.7169 1.3674 38 1 2.0053 1.2075 2.3333 39 1 1.1683 -0.1514 3.2017 40 1 3.2658 -1.3892 3.4754 41 1 4.0242 0.2564 3.3495 42 1 4.0535 -1.6347 1.1676 43 1 4.0383 0.1624 0.9002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591995753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:56 Heat of formation + Delta-G solvation = -66.631732 kcal Electronic energy + Delta-G solvation = -23169.688256 eV Core-core repulsion = 19829.131678 eV Total energy + Delta-G solvation = -3340.556578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.97783 -38.88077 -37.24036 -34.43206 -34.18520 -32.15810 -30.81944 -29.44746 -27.69827 -26.05135 -25.45984 -24.91778 -22.73369 -21.28527 -19.91927 -19.59735 -19.10049 -17.54653 -17.01275 -16.19129 -15.39141 -15.10959 -14.98156 -14.90918 -14.33278 -13.98948 -13.65580 -13.02850 -12.93722 -12.79017 -12.63886 -12.56122 -12.08622 -12.01681 -11.87730 -11.61259 -11.47626 -11.14898 -11.00398 -10.78368 -10.64353 -10.56475 -10.49844 -10.46664 -10.29638 -10.15865 -9.52679 -9.34078 -8.72499 -8.65517 -8.32674 -7.62688 -6.25387 -4.35190 3.17752 3.24791 3.29651 3.31571 3.82644 4.27239 4.38535 4.47799 4.52394 4.64821 4.78861 5.01607 5.13891 5.26185 5.44804 5.48709 5.55459 5.61245 5.63426 5.68877 5.71876 5.80075 5.81497 5.83200 6.01236 6.05663 6.09222 6.20794 6.29313 6.42827 6.54417 6.74116 6.91828 6.92768 7.03281 7.27670 7.36547 7.72319 7.77364 8.05441 8.60975 8.69824 9.22472 9.33969 9.44712 10.81766 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033033 B = 0.003795 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.426469 B = 7376.189226 C = 7519.297558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.172 3.828 3 H 0.085 0.915 4 N -0.745 5.745 5 C 0.717 3.283 6 O -0.599 6.599 7 N -0.629 5.629 8 C 0.107 3.893 9 C -0.116 4.116 10 C 0.249 3.751 11 O -0.584 6.584 12 C -0.539 4.539 13 H 0.066 0.934 14 C 0.071 3.929 15 N -0.893 5.893 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.114 3.886 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.133 4.133 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.391 0.609 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.383 0.617 34 H 0.271 0.729 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.076 -4.740 16.798 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.066 3.934 3 H 0.103 0.897 4 N -0.401 5.401 5 C 0.419 3.581 6 O -0.478 6.478 7 N -0.365 5.365 8 C -0.017 4.017 9 C -0.154 4.154 10 C 0.208 3.792 11 O -0.393 6.393 12 C -0.578 4.578 13 H 0.084 0.916 14 C -0.132 4.132 15 N -0.532 5.532 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.008 4.008 21 C -0.139 4.139 22 C -0.167 4.167 23 C -0.181 4.181 24 C -0.171 4.171 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.224 0.776 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.234 0.766 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.895 -4.210 17.035 17.570 hybrid contribution 0.379 0.290 -1.107 1.206 sum 1.275 -3.920 15.928 16.452 Atomic orbital electron populations 1.22179 0.95877 1.01810 1.02252 1.20714 0.93531 0.96792 0.82350 0.89719 1.45157 1.72655 1.13372 1.08880 1.15541 0.78382 0.84618 0.79600 1.90871 1.58109 1.14503 1.84313 1.47925 1.67523 1.10885 1.10216 1.21898 0.97981 0.82890 0.98920 1.22592 1.00282 1.00424 0.92117 1.19614 0.80967 0.87637 0.90985 1.86077 1.24645 1.47082 1.81476 1.21446 1.13561 1.17167 1.05583 0.91592 1.25079 0.94827 0.94993 0.98298 1.69648 1.23887 1.21325 1.38302 0.86459 0.79847 0.77930 0.82634 1.20023 1.21087 1.20025 1.23121 1.01075 0.98688 0.77945 1.22866 0.96737 0.99873 0.94389 1.22872 0.97554 0.99848 0.96428 1.22823 0.97544 1.00996 0.96729 1.22882 0.95735 1.02359 0.96078 0.91854 0.92841 0.92115 0.77586 0.92769 0.93258 0.90841 0.90498 0.76582 0.91897 0.92610 0.89963 0.88985 0.89807 0.91394 0.90356 0.91530 0.91594 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.44 37.16 0.35 -1.71 16 2 C 0.17 2.25 2.29 -67.93 -0.16 2.10 16 3 H 0.08 1.29 7.47 -51.93 -0.39 0.90 16 4 N -0.74 -11.39 4.89 -58.68 -0.29 -11.68 16 5 C 0.72 14.79 8.45 -86.92 -0.73 14.06 16 6 O -0.60 -14.70 16.26 5.29 0.09 -14.61 16 7 N -0.63 -13.23 3.33 -176.19 -0.59 -13.82 16 8 C 0.11 1.88 6.15 -3.07 -0.02 1.86 16 9 C -0.12 -2.30 6.13 -24.89 -0.15 -2.46 16 10 C 0.25 6.06 0.88 -89.61 -0.08 5.98 16 11 O -0.58 -15.07 13.17 -35.23 -0.46 -15.53 16 12 C -0.54 -14.08 8.25 -34.44 -0.28 -14.37 16 13 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 14 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 15 N -0.89 -24.06 10.69 55.43 0.59 -23.47 16 16 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 20 C 0.11 2.79 5.52 -2.49 -0.01 2.78 16 21 C -0.12 -1.16 3.18 -89.80 -0.29 -1.44 16 22 C -0.13 -1.08 7.50 -25.92 -0.19 -1.28 16 23 C -0.14 -1.14 8.08 -25.91 -0.21 -1.35 16 24 C -0.13 -1.27 7.49 -25.91 -0.19 -1.46 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 28 H 0.39 5.11 7.59 -40.82 -0.31 4.80 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 33 H 0.38 10.25 7.24 45.56 0.33 10.58 16 34 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.06 1.41 8.03 -51.93 -0.42 0.99 16 36 H 0.08 2.28 7.48 -51.92 -0.39 1.90 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.73 8.02 -51.93 -0.42 0.32 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -29.88 345.37 -9.16 -39.03 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -6.62 Total: 15.00 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -2.07 Total: 4.47 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.28 Total: -48.97 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.38 Total: -30.14 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.88 -9.16 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591995753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.599 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds