Wall clock time and date at job start Tue Mar 31 2020 05:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46981 * 2 1 4 4 N 1.46495 * 109.47280 * 239.99542 * 2 1 3 5 5 C 1.34779 * 119.99905 * 84.99787 * 4 2 1 6 6 O 1.21586 * 119.99798 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99859 * 180.02562 * 5 4 2 8 8 C 1.47017 * 125.64842 * 0.02563 * 7 5 4 9 9 C 1.54326 * 107.27135 * 178.90082 * 8 7 5 10 10 C 1.55159 * 102.94213 * 337.81214 * 9 8 7 11 11 O 1.42902 * 110.99974 * 277.38757 * 10 9 8 12 12 C 1.50698 * 111.00704 * 153.57646 * 10 9 8 13 13 H 1.08000 * 119.99830 * 3.17777 * 12 10 9 14 14 C 1.37879 * 120.00044 * 182.90314 * 12 10 9 15 15 N 1.31515 * 120.00082 * 0.27528 * 14 12 10 16 16 Si 1.86797 * 119.99763 * 180.27343 * 14 12 10 17 17 H 1.48500 * 109.47253 * 60.00270 * 16 14 12 18 18 H 1.48503 * 109.47225 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47512 * 299.99828 * 16 14 12 20 20 C 1.47465 * 125.62830 * 179.97438 * 7 5 4 21 21 C 1.53003 * 109.46814 * 119.99520 * 2 1 3 22 22 C 1.53784 * 113.61656 * 281.80190 * 21 2 1 23 23 C 1.53784 * 87.08139 * 220.02051 * 22 21 2 24 24 C 1.53785 * 113.61180 * 184.30386 * 21 2 1 25 25 H 1.08999 * 109.47252 * 58.74511 * 1 2 3 26 26 H 1.08996 * 109.47457 * 178.74886 * 1 2 3 27 27 H 1.09004 * 109.47239 * 298.75301 * 1 2 3 28 28 H 0.97002 * 120.00289 * 265.00112 * 4 2 1 29 29 H 1.09004 * 109.88347 * 59.48970 * 8 7 5 30 30 H 1.09000 * 109.88587 * 298.31941 * 8 7 5 31 31 H 1.09002 * 110.72422 * 219.44839 * 9 8 7 32 32 H 1.09000 * 110.71791 * 96.17086 * 9 8 7 33 33 H 0.96701 * 113.99615 * 176.81676 * 11 10 9 34 34 H 0.96994 * 119.99902 * 179.97438 * 15 14 12 35 35 H 1.08999 * 110.35280 * 85.32183 * 20 7 5 36 36 H 1.09008 * 110.40123 * 322.98948 * 20 7 5 37 37 H 1.09004 * 112.84970 * 53.11071 * 21 2 1 38 38 H 1.09000 * 113.61128 * 334.57124 * 22 21 2 39 39 H 1.08999 * 113.61101 * 105.47494 * 22 21 2 40 40 H 1.09003 * 113.61301 * 270.88578 * 23 22 21 41 41 H 1.08997 * 113.68594 * 139.99383 * 23 22 21 42 42 H 1.08996 * 113.61490 * 254.53238 * 24 21 2 43 43 H 1.08998 * 113.61454 * 25.44071 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8582 1.1614 -2.4116 7 7 2.5958 -0.6540 -3.4576 8 6 2.9786 -2.0715 -3.5322 9 6 3.4000 -2.3562 -4.9893 10 6 2.6932 -1.2256 -5.7827 11 8 1.3318 -1.5646 -6.0546 12 6 3.4345 -0.9154 -7.0576 13 1 4.3038 -1.4948 -7.3313 14 6 2.9995 0.1043 -7.8773 15 7 1.9409 0.8099 -7.5440 16 14 3.9140 0.4837 -9.4613 17 1 3.9000 -0.7134 -10.3399 18 1 3.2510 1.6162 -10.1566 19 1 5.3182 0.8506 -9.1467 20 6 2.7831 -0.0425 -4.7864 21 6 2.0399 -0.7212 1.2493 22 6 1.9735 0.1350 2.5251 23 6 3.3384 -0.4640 2.9037 24 6 3.5700 -0.6858 1.3996 25 1 -0.3634 0.5332 -0.8785 26 1 -0.3634 -1.0274 -0.0224 27 1 -0.3634 0.4944 0.9010 28 1 2.2490 -1.6319 -1.1525 29 1 2.1294 -2.6995 -3.2625 30 1 3.8143 -2.2657 -2.8599 31 1 3.0419 -3.3344 -5.3102 32 1 4.4822 -2.2855 -5.0985 33 1 0.8357 -0.8680 -6.5059 34 1 1.6352 1.5275 -8.1205 35 1 3.7614 0.4339 -4.8500 36 1 1.9936 0.6823 -4.9858 37 1 1.6125 -1.7169 1.3674 38 1 2.0053 1.2075 2.3333 39 1 1.1683 -0.1514 3.2017 40 1 3.2658 -1.3892 3.4754 41 1 4.0242 0.2564 3.3495 42 1 4.0535 -1.6347 1.1676 43 1 4.0383 0.1624 0.9002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591995753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:55 Heat of formation + Delta-G solvation = -87.306334 kcal Electronic energy + Delta-G solvation = -23170.584774 eV Core-core repulsion = 19829.131678 eV Total energy + Delta-G solvation = -3341.453096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38651 -40.01071 -38.88725 -36.03673 -35.73405 -34.18697 -32.30617 -30.91086 -29.48492 -27.15510 -26.54637 -26.20673 -24.30508 -22.40321 -21.44162 -21.10929 -20.20603 -19.24476 -18.78037 -17.49685 -16.97318 -16.71858 -16.30026 -16.22495 -15.89678 -15.27741 -15.10007 -14.75726 -14.62361 -14.16018 -13.74295 -13.57897 -13.47622 -13.30158 -13.28877 -13.04536 -12.80852 -12.66682 -12.50985 -12.32535 -12.27666 -12.13505 -12.08716 -11.44015 -11.36734 -11.21576 -11.10436 -11.07434 -10.64591 -10.32982 -10.09943 -9.30099 -8.24416 -6.41959 1.43868 1.44274 1.52774 1.71888 2.19845 2.38771 3.01531 3.09661 3.67201 3.74690 3.80360 3.85531 4.03905 4.11049 4.19708 4.30501 4.33102 4.36106 4.47124 4.63124 4.76027 4.76949 4.88136 4.90589 4.91000 5.03748 5.06570 5.10514 5.11739 5.14064 5.26396 5.33225 5.36245 5.40785 5.46502 5.61379 5.69715 5.76675 6.05109 6.23084 6.65425 7.11793 7.29675 7.36496 7.63040 8.80853 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033033 B = 0.003795 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.426469 B = 7376.189226 C = 7519.297558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.168 3.832 3 H 0.056 0.944 4 N -0.722 5.722 5 C 0.710 3.290 6 O -0.647 6.647 7 N -0.635 5.635 8 C 0.109 3.891 9 C -0.110 4.110 10 C 0.232 3.768 11 O -0.588 6.588 12 C -0.558 4.558 13 H 0.071 0.929 14 C 0.025 3.975 15 N -0.918 5.918 16 Si 0.966 3.034 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.270 1.270 20 C 0.129 3.871 21 C -0.111 4.111 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.139 4.139 25 H 0.023 0.977 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.407 0.593 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.374 0.626 34 H 0.269 0.731 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 -6.993 18.613 19.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.075 0.925 4 N -0.378 5.378 5 C 0.412 3.588 6 O -0.530 6.530 7 N -0.371 5.371 8 C -0.013 4.013 9 C -0.148 4.148 10 C 0.192 3.808 11 O -0.397 6.397 12 C -0.596 4.596 13 H 0.089 0.911 14 C -0.176 4.176 15 N -0.557 5.557 16 Si 0.791 3.209 17 H -0.193 1.193 18 H -0.212 1.212 19 H -0.195 1.195 20 C 0.005 3.995 21 C -0.130 4.130 22 C -0.166 4.166 23 C -0.172 4.172 24 C -0.176 4.176 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.243 0.757 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.224 0.776 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.132 0.868 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.761 -6.530 18.900 20.074 hybrid contribution 0.100 1.009 -1.634 1.923 sum 1.861 -5.522 17.266 18.223 Atomic orbital electron populations 1.22129 0.95353 1.02475 1.01607 1.20912 0.93926 0.95919 0.82913 0.92526 1.45011 1.71243 1.13887 1.07643 1.15795 0.78167 0.84236 0.80651 1.90833 1.60050 1.16914 1.85232 1.47875 1.67893 1.12252 1.09115 1.22093 1.00129 0.80720 0.98404 1.22598 1.00525 0.99147 0.92545 1.19867 0.80399 0.89587 0.90996 1.86066 1.25513 1.46732 1.81348 1.21812 1.13926 1.17353 1.06521 0.91115 1.25860 0.95541 0.94890 1.01300 1.69779 1.25107 1.21613 1.39195 0.85491 0.78715 0.77705 0.79015 1.19306 1.21208 1.19455 1.22647 0.98315 0.98125 0.80432 1.22881 0.96771 1.00649 0.92691 1.22883 0.98639 0.99184 0.95845 1.22808 0.96978 1.01772 0.95592 1.22883 0.95439 1.01936 0.97392 0.95747 0.91253 0.89689 0.75737 0.91012 0.89214 0.89618 0.89249 0.77648 0.92135 0.94355 0.94385 0.86819 0.90785 0.89618 0.88577 0.91353 0.90640 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 9.44 71.98 0.68 -3.16 16 2 C 0.17 4.27 2.29 44.99 0.10 4.37 16 3 H 0.06 1.78 7.47 -2.39 -0.02 1.76 16 4 N -0.72 -21.30 4.89 -457.82 -2.24 -23.53 16 5 C 0.71 29.70 8.45 179.05 1.51 31.21 16 6 O -0.65 -33.35 16.26 -3.99 -0.06 -33.42 16 7 N -0.63 -26.72 3.33 -829.60 -2.76 -29.48 16 8 C 0.11 3.54 6.15 86.73 0.53 4.07 16 9 C -0.11 -4.17 6.13 31.78 0.19 -3.97 16 10 C 0.23 11.39 0.88 -10.14 -0.01 11.38 16 11 O -0.59 -30.90 13.17 -148.98 -1.96 -32.86 16 12 C -0.56 -29.31 8.25 25.60 0.21 -29.10 16 13 H 0.07 3.55 7.78 -2.91 -0.02 3.53 16 14 C 0.02 1.31 5.29 84.65 0.45 1.76 16 15 N -0.92 -51.14 10.69 21.45 0.23 -50.91 16 16 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 18 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 20 C 0.13 6.53 5.52 86.85 0.48 7.01 16 21 C -0.11 -1.85 3.18 -10.26 -0.03 -1.88 16 22 C -0.13 -1.81 7.50 31.12 0.23 -1.57 16 23 C -0.13 -1.73 8.08 31.12 0.25 -1.48 16 24 C -0.14 -2.34 7.49 31.12 0.23 -2.11 16 25 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.64 8.05 -2.38 -0.02 1.62 16 28 H 0.41 9.47 7.59 -92.71 -0.70 8.77 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.09 3.13 8.03 -2.39 -0.02 3.11 16 33 H 0.37 20.83 7.24 -74.06 -0.54 20.29 16 34 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.04 2.02 8.03 -2.39 -0.02 2.00 16 36 H 0.04 2.23 7.48 -2.38 -0.02 2.22 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.20 8.02 -2.39 -0.02 1.18 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 Total: -1.00 -68.18 345.37 -0.17 -68.35 By element: Atomic # 1 Polarization: 41.37 SS G_CDS: -0.24 Total: 41.13 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 4.84 Total: 16.54 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -4.77 Total: -103.93 kcal Atomic # 8 Polarization: -64.25 SS G_CDS: -2.03 Total: -66.28 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -68.18 -0.17 -68.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591995753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.959 kcal (2) G-P(sol) polarization free energy of solvation -68.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds