Wall clock time and date at job start Tue Mar 31 2020 05:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21593 * 119.99949 * 0.28071 * 5 4 2 7 7 N 1.34777 * 120.00128 * 180.27942 * 5 4 2 8 8 C 1.47427 * 125.64523 * 359.69225 * 7 5 4 9 9 C 1.55133 * 104.72081 * 155.82127 * 8 7 5 10 10 C 1.55157 * 101.48578 * 37.29249 * 9 8 7 11 11 O 1.42899 * 110.72199 * 82.69974 * 10 9 8 12 12 C 1.50700 * 110.87097 * 205.89947 * 10 9 8 13 13 H 1.07996 * 120.00357 * 355.06275 * 12 10 9 14 14 C 1.37882 * 119.99967 * 175.06652 * 12 10 9 15 15 N 1.31520 * 119.99869 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00130 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46817 * 90.00118 * 16 14 12 18 18 H 1.48495 * 109.47138 * 209.99988 * 16 14 12 19 19 H 1.48501 * 109.46836 * 329.99898 * 16 14 12 20 20 C 1.47021 * 125.64915 * 180.02562 * 7 5 4 21 21 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 22 22 C 1.53781 * 113.61430 * 159.13255 * 21 2 1 23 23 C 1.53948 * 87.02136 * 220.05114 * 22 21 2 24 24 C 1.53780 * 87.11519 * 25.36522 * 23 22 21 25 25 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 26 26 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 27 27 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 29 29 H 1.09006 * 110.36477 * 274.74432 * 8 7 5 30 30 H 1.09000 * 110.36585 * 37.07226 * 8 7 5 31 31 H 1.09000 * 111.18680 * 279.19110 * 9 8 7 32 32 H 1.08999 * 110.90638 * 155.27535 * 9 8 7 33 33 H 0.96697 * 114.00773 * 185.02628 * 11 10 9 34 34 H 0.97002 * 119.99668 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.88345 * 300.43408 * 20 7 5 36 36 H 1.08997 * 109.88642 * 61.44600 * 20 7 5 37 37 H 1.09001 * 112.85342 * 290.33537 * 21 2 1 38 38 H 1.09000 * 113.61496 * 334.57497 * 22 21 2 39 39 H 1.09009 * 113.61320 * 105.47007 * 22 21 2 40 40 H 1.09009 * 113.53920 * 270.81346 * 23 22 21 41 41 H 1.09002 * 113.74449 * 139.95025 * 23 22 21 42 42 H 1.09000 * 113.61555 * 220.09635 * 24 23 22 43 43 H 1.08994 * 113.61582 * 89.18076 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8631 1.1629 2.4103 7 7 2.6069 -0.6508 3.4548 8 6 2.9864 -2.0734 3.5309 9 6 3.9800 -2.1533 4.7196 10 6 3.3578 -1.1351 5.7113 11 8 2.3054 -1.7413 6.4644 12 6 4.4098 -0.5685 6.6296 13 1 5.4210 -0.9457 6.5901 14 6 4.0814 0.4316 7.5202 15 7 2.8498 0.8906 7.5686 16 14 5.3852 1.1335 8.6589 17 1 6.0531 2.2831 7.9974 18 1 4.7474 1.5901 9.9198 19 1 6.3916 0.0852 8.9646 20 6 2.7999 -0.0399 4.7781 21 6 2.0400 -0.7213 -1.2492 22 6 3.4866 -0.3576 -1.6231 23 6 3.0233 -0.3619 -3.0912 24 6 1.6120 -0.0509 -2.5655 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.2491 -1.6318 1.1526 29 1 2.1088 -2.6902 3.7249 30 1 3.4742 -2.3858 2.6075 31 1 4.9806 -1.8435 4.4181 32 1 3.9952 -3.1558 5.1471 33 1 1.8325 -1.1281 7.0436 34 1 2.6189 1.5944 8.1949 35 1 3.5109 0.7831 4.7063 36 1 1.8469 0.3260 5.1601 37 1 1.8520 -1.7947 -1.2247 38 1 3.7962 0.6246 -1.2658 39 1 4.2080 -1.1408 -1.3896 40 1 3.1054 -1.3374 -3.5708 41 1 3.4532 0.4414 -3.6895 42 1 0.8221 -0.5869 -3.0917 43 1 1.4081 1.0152 -2.4663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591995755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:58 Heat of formation + Delta-G solvation = -65.959870 kcal Electronic energy + Delta-G solvation = -23110.227644 eV Core-core repulsion = 19769.700199 eV Total energy + Delta-G solvation = -3340.527444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.99187 -38.91381 -37.28850 -34.46494 -34.21786 -32.20025 -30.77646 -29.42577 -27.68430 -26.16170 -25.38119 -24.91571 -22.78168 -21.35529 -20.00144 -19.59268 -19.04554 -17.54623 -17.01744 -16.28578 -15.44737 -15.03647 -15.01452 -14.88570 -14.34331 -13.96385 -13.64645 -13.07367 -12.89584 -12.85792 -12.67755 -12.60804 -12.11340 -12.07521 -11.77806 -11.66436 -11.45366 -11.17551 -11.02503 -10.78533 -10.64933 -10.64558 -10.47914 -10.46479 -10.36524 -10.14662 -9.52518 -9.28959 -8.74537 -8.65635 -8.28988 -7.71139 -6.25629 -4.34210 3.16305 3.23934 3.30639 3.33403 3.79813 4.28210 4.35921 4.46496 4.51434 4.62596 4.74644 5.02157 5.11748 5.26451 5.40209 5.48606 5.53186 5.58674 5.61087 5.71107 5.71747 5.77893 5.80964 5.83174 5.98280 6.03084 6.07734 6.18769 6.27664 6.38665 6.53341 6.74728 6.90636 6.92132 7.03794 7.30356 7.35723 7.70567 7.75771 8.06823 8.59060 8.70094 9.20022 9.32039 9.40664 10.82182 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028882 B = 0.003799 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.220263 B = 7368.857195 C = 7395.384386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.171 3.829 3 H 0.085 0.915 4 N -0.746 5.746 5 C 0.715 3.285 6 O -0.598 6.598 7 N -0.631 5.631 8 C 0.104 3.896 9 C -0.116 4.116 10 C 0.248 3.752 11 O -0.585 6.585 12 C -0.538 4.538 13 H 0.066 0.934 14 C 0.071 3.929 15 N -0.893 5.893 16 Si 0.903 3.097 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.124 3.876 21 C -0.119 4.119 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.129 4.129 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.391 0.609 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.382 0.618 34 H 0.270 0.730 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 -5.117 -17.023 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.066 3.934 3 H 0.103 0.897 4 N -0.402 5.402 5 C 0.417 3.583 6 O -0.477 6.477 7 N -0.368 5.368 8 C -0.020 4.020 9 C -0.154 4.154 10 C 0.207 3.793 11 O -0.394 6.394 12 C -0.576 4.576 13 H 0.084 0.916 14 C -0.133 4.133 15 N -0.532 5.532 16 Si 0.731 3.269 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.002 3.998 21 C -0.137 4.137 22 C -0.172 4.172 23 C -0.181 4.181 24 C -0.167 4.167 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.224 0.776 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.232 0.768 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.644 -4.584 -17.242 17.916 hybrid contribution 0.511 0.489 0.931 1.170 sum -1.132 -4.095 -16.310 16.854 Atomic orbital electron populations 1.22175 0.95868 1.01748 1.02275 1.20730 0.93512 0.96876 0.82296 0.89665 1.45201 1.72654 1.13347 1.09001 1.15543 0.78488 0.84612 0.79616 1.90875 1.58081 1.14477 1.84296 1.47973 1.67469 1.10973 1.10428 1.22262 0.98164 0.82925 0.98599 1.22755 0.97496 1.00694 0.94422 1.19509 0.85384 0.86871 0.87507 1.86099 1.50792 1.41699 1.60814 1.21492 0.96223 1.20025 1.19863 0.91588 1.25074 0.95825 0.95601 0.96767 1.69705 1.17845 1.28484 1.37155 0.86407 0.81354 0.79261 0.79914 1.20428 1.21001 1.19710 1.22829 1.00910 0.97629 0.78461 1.22844 0.96872 1.00147 0.93884 1.22969 0.96120 1.02292 0.95814 1.22852 0.96878 1.01720 0.96659 1.22863 0.96993 1.01158 0.95657 0.91938 0.92031 0.92862 0.77557 0.92090 0.92701 0.90521 0.90684 0.76780 0.92022 0.91881 0.91982 0.89033 0.89887 0.91531 0.90366 0.91504 0.91384 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.31 37.16 0.35 -1.64 16 2 C 0.17 2.21 2.38 -67.93 -0.16 2.05 16 3 H 0.09 1.29 7.41 -51.93 -0.38 0.91 16 4 N -0.75 -11.25 5.04 -58.68 -0.30 -11.54 16 5 C 0.72 14.65 8.46 -86.92 -0.74 13.92 16 6 O -0.60 -14.61 16.33 5.28 0.09 -14.53 16 7 N -0.63 -13.24 3.32 -176.09 -0.59 -13.82 16 8 C 0.10 1.82 6.58 -2.41 -0.02 1.80 16 9 C -0.12 -2.30 6.24 -24.46 -0.15 -2.45 16 10 C 0.25 6.02 0.85 -89.94 -0.08 5.94 16 11 O -0.59 -14.75 13.07 -35.23 -0.46 -15.21 16 12 C -0.54 -14.15 8.13 -34.44 -0.28 -14.43 16 13 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 14 C 0.07 1.86 5.28 -17.82 -0.09 1.77 16 15 N -0.89 -24.06 10.96 55.43 0.61 -23.45 16 16 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 C 0.12 3.06 5.23 -3.06 -0.02 3.04 16 21 C -0.12 -1.13 3.29 -89.80 -0.30 -1.43 16 22 C -0.13 -1.28 7.65 -25.83 -0.20 -1.48 16 23 C -0.14 -1.13 8.09 -25.83 -0.21 -1.33 16 24 C -0.13 -1.05 6.75 -25.91 -0.17 -1.22 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.62 7.50 -51.93 -0.39 0.24 16 27 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.39 4.98 7.08 -40.82 -0.29 4.69 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.77 7.29 -51.93 -0.38 0.39 16 31 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.38 9.88 7.45 45.56 0.34 10.22 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.06 1.71 7.81 -51.93 -0.41 1.31 16 36 H 0.06 1.68 7.92 -51.93 -0.41 1.27 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.90 7.99 -51.93 -0.41 0.48 16 39 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -30.02 343.76 -9.07 -39.09 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -6.52 Total: 14.15 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -2.06 Total: 4.54 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.27 Total: -48.82 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.37 Total: -29.73 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.02 -9.07 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591995755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.872 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds