Wall clock time and date at job start Tue Mar 31 2020 05:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21593 * 119.99949 * 0.28071 * 5 4 2 7 7 N 1.34777 * 120.00128 * 180.27942 * 5 4 2 8 8 C 1.47427 * 125.64523 * 359.69225 * 7 5 4 9 9 C 1.55133 * 104.72081 * 155.82127 * 8 7 5 10 10 C 1.55157 * 101.48578 * 37.29249 * 9 8 7 11 11 O 1.42899 * 110.72199 * 82.69974 * 10 9 8 12 12 C 1.50700 * 110.87097 * 205.89947 * 10 9 8 13 13 H 1.07996 * 120.00357 * 355.06275 * 12 10 9 14 14 C 1.37882 * 119.99967 * 175.06652 * 12 10 9 15 15 N 1.31520 * 119.99869 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00130 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46817 * 90.00118 * 16 14 12 18 18 H 1.48495 * 109.47138 * 209.99988 * 16 14 12 19 19 H 1.48501 * 109.46836 * 329.99898 * 16 14 12 20 20 C 1.47021 * 125.64915 * 180.02562 * 7 5 4 21 21 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 22 22 C 1.53781 * 113.61430 * 159.13255 * 21 2 1 23 23 C 1.53948 * 87.02136 * 220.05114 * 22 21 2 24 24 C 1.53780 * 87.11519 * 25.36522 * 23 22 21 25 25 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 26 26 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 27 27 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 29 29 H 1.09006 * 110.36477 * 274.74432 * 8 7 5 30 30 H 1.09000 * 110.36585 * 37.07226 * 8 7 5 31 31 H 1.09000 * 111.18680 * 279.19110 * 9 8 7 32 32 H 1.08999 * 110.90638 * 155.27535 * 9 8 7 33 33 H 0.96697 * 114.00773 * 185.02628 * 11 10 9 34 34 H 0.97002 * 119.99668 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.88345 * 300.43408 * 20 7 5 36 36 H 1.08997 * 109.88642 * 61.44600 * 20 7 5 37 37 H 1.09001 * 112.85342 * 290.33537 * 21 2 1 38 38 H 1.09000 * 113.61496 * 334.57497 * 22 21 2 39 39 H 1.09009 * 113.61320 * 105.47007 * 22 21 2 40 40 H 1.09009 * 113.53920 * 270.81346 * 23 22 21 41 41 H 1.09002 * 113.74449 * 139.95025 * 23 22 21 42 42 H 1.09000 * 113.61555 * 220.09635 * 24 23 22 43 43 H 1.08994 * 113.61582 * 89.18076 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8631 1.1629 2.4103 7 7 2.6069 -0.6508 3.4548 8 6 2.9864 -2.0734 3.5309 9 6 3.9800 -2.1533 4.7196 10 6 3.3578 -1.1351 5.7113 11 8 2.3054 -1.7413 6.4644 12 6 4.4098 -0.5685 6.6296 13 1 5.4210 -0.9457 6.5901 14 6 4.0814 0.4316 7.5202 15 7 2.8498 0.8906 7.5686 16 14 5.3852 1.1335 8.6589 17 1 6.0531 2.2831 7.9974 18 1 4.7474 1.5901 9.9198 19 1 6.3916 0.0852 8.9646 20 6 2.7999 -0.0399 4.7781 21 6 2.0400 -0.7213 -1.2492 22 6 3.4866 -0.3576 -1.6231 23 6 3.0233 -0.3619 -3.0912 24 6 1.6120 -0.0509 -2.5655 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.2491 -1.6318 1.1526 29 1 2.1088 -2.6902 3.7249 30 1 3.4742 -2.3858 2.6075 31 1 4.9806 -1.8435 4.4181 32 1 3.9952 -3.1558 5.1471 33 1 1.8325 -1.1281 7.0436 34 1 2.6189 1.5944 8.1949 35 1 3.5109 0.7831 4.7063 36 1 1.8469 0.3260 5.1601 37 1 1.8520 -1.7947 -1.2247 38 1 3.7962 0.6246 -1.2658 39 1 4.2080 -1.1408 -1.3896 40 1 3.1054 -1.3374 -3.5708 41 1 3.4532 0.4414 -3.6895 42 1 0.8221 -0.5869 -3.0917 43 1 1.4081 1.0152 -2.4663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591995755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:57 Heat of formation + Delta-G solvation = -86.921998 kcal Electronic energy + Delta-G solvation = -23111.136630 eV Core-core repulsion = 19769.700199 eV Total energy + Delta-G solvation = -3341.436430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.40700 -40.02928 -38.93671 -36.06026 -35.75926 -34.23197 -32.23936 -30.89718 -29.48337 -27.21149 -26.59289 -26.11678 -24.36056 -22.45921 -21.41967 -21.20639 -20.15788 -19.20868 -18.79921 -17.64266 -16.99679 -16.69625 -16.27291 -16.21630 -15.86243 -15.20344 -15.07318 -14.76258 -14.68541 -14.29841 -13.84685 -13.53068 -13.50959 -13.34447 -13.30137 -13.03221 -12.85124 -12.55782 -12.51579 -12.34098 -12.28659 -12.17829 -12.05856 -11.43572 -11.38635 -11.16965 -11.12909 -11.08300 -10.65947 -10.29352 -10.14396 -9.38339 -8.26402 -6.42474 1.40856 1.42704 1.52657 1.69386 2.16918 2.37765 3.00431 3.06887 3.64970 3.74420 3.80158 3.84833 4.03060 4.06157 4.17973 4.30549 4.34657 4.38551 4.49815 4.59299 4.72182 4.76583 4.86733 4.90299 4.91650 5.03248 5.05652 5.11984 5.13056 5.14752 5.25227 5.30283 5.34269 5.37356 5.50827 5.58029 5.71548 5.74541 6.04076 6.21083 6.64639 7.09662 7.27153 7.34643 7.60736 8.79743 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028882 B = 0.003799 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.220263 B = 7368.857195 C = 7395.384386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.167 3.833 3 H 0.056 0.944 4 N -0.722 5.722 5 C 0.709 3.291 6 O -0.647 6.647 7 N -0.637 5.637 8 C 0.108 3.892 9 C -0.110 4.110 10 C 0.233 3.767 11 O -0.587 6.587 12 C -0.558 4.558 13 H 0.068 0.932 14 C 0.025 3.975 15 N -0.916 5.916 16 Si 0.964 3.036 17 H -0.280 1.280 18 H -0.282 1.282 19 H -0.263 1.263 20 C 0.144 3.856 21 C -0.111 4.111 22 C -0.143 4.143 23 C -0.134 4.134 24 C -0.125 4.125 25 H 0.024 0.976 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.407 0.593 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.375 0.625 34 H 0.269 0.731 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.835 -7.290 -19.108 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.063 3.937 3 H 0.074 0.926 4 N -0.379 5.379 5 C 0.411 3.589 6 O -0.529 6.529 7 N -0.374 5.374 8 C -0.013 4.013 9 C -0.148 4.148 10 C 0.193 3.807 11 O -0.394 6.394 12 C -0.596 4.596 13 H 0.086 0.914 14 C -0.176 4.176 15 N -0.555 5.555 16 Si 0.789 3.211 17 H -0.205 1.205 18 H -0.207 1.207 19 H -0.188 1.188 20 C 0.020 3.980 21 C -0.129 4.129 22 C -0.180 4.180 23 C -0.172 4.172 24 C -0.163 4.163 25 H 0.044 0.956 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.244 0.756 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.224 0.776 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.131 0.869 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.987 -6.824 -19.378 20.568 hybrid contribution 0.290 1.190 1.542 1.969 sum -0.697 -5.634 -17.836 18.717 Atomic orbital electron populations 1.22120 0.95123 1.02636 1.01589 1.20933 0.94086 0.95915 0.82783 0.92596 1.45060 1.71198 1.13902 1.07703 1.15799 0.78207 0.84214 0.80644 1.90838 1.59992 1.16900 1.85212 1.47915 1.67843 1.12367 1.09264 1.22436 0.98316 0.80707 0.99873 1.22754 0.98042 1.00077 0.93912 1.19719 0.84912 0.88294 0.87802 1.86088 1.51031 1.41517 1.60791 1.21849 0.96841 1.20440 1.20494 0.91408 1.25838 0.97607 0.95957 0.98218 1.69820 1.19346 1.28745 1.37632 0.85466 0.79113 0.78521 0.78009 1.20546 1.20705 1.18766 1.22302 0.97789 0.97122 0.80832 1.22865 0.96804 1.00945 0.92330 1.22989 0.96236 1.01356 0.97451 1.22834 0.96141 1.02746 0.95443 1.22873 0.97909 1.00923 0.94633 0.95648 0.89722 0.91082 0.75613 0.91123 0.88029 0.89843 0.89075 0.77646 0.92140 0.95558 0.95692 0.86891 0.91978 0.91043 0.88714 0.91233 0.89553 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 9.31 71.98 0.67 -2.97 16 2 C 0.17 4.15 2.38 44.99 0.11 4.26 16 3 H 0.06 1.74 7.41 -2.39 -0.02 1.72 16 4 N -0.72 -20.81 5.04 -457.81 -2.31 -23.11 16 5 C 0.71 29.37 8.46 179.05 1.51 30.88 16 6 O -0.65 -33.08 16.33 -4.01 -0.07 -33.14 16 7 N -0.64 -26.76 3.32 -829.29 -2.76 -29.52 16 8 C 0.11 3.53 6.58 86.93 0.57 4.10 16 9 C -0.11 -4.17 6.24 32.06 0.20 -3.97 16 10 C 0.23 11.43 0.85 -10.35 -0.01 11.43 16 11 O -0.59 -29.93 13.07 -148.98 -1.95 -31.88 16 12 C -0.56 -29.68 8.13 25.60 0.21 -29.47 16 13 H 0.07 3.49 7.78 -2.91 -0.02 3.47 16 14 C 0.02 1.32 5.28 84.66 0.45 1.76 16 15 N -0.92 -51.02 10.96 21.45 0.24 -50.78 16 16 Si 0.96 42.69 29.54 68.60 2.03 44.71 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 20 C 0.14 7.39 5.23 86.73 0.45 7.84 16 21 C -0.11 -1.80 3.29 -10.26 -0.03 -1.83 16 22 C -0.14 -2.43 7.65 31.18 0.24 -2.19 16 23 C -0.13 -1.70 8.09 31.18 0.25 -1.44 16 24 C -0.13 -1.67 6.75 31.12 0.21 -1.46 16 25 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.08 1.56 7.50 -2.39 -0.02 1.55 16 27 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.41 9.05 7.08 -92.71 -0.66 8.40 16 29 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.10 2.39 7.29 -2.39 -0.02 2.37 16 31 H 0.08 3.04 8.04 -2.39 -0.02 3.02 16 32 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.37 20.06 7.45 -74.06 -0.55 19.51 16 34 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.03 1.50 7.81 -2.39 -0.02 1.48 16 36 H 0.02 1.43 7.92 -2.39 -0.02 1.41 16 37 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.32 7.99 -2.39 -0.02 1.30 16 39 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 Total: -1.00 -68.71 343.76 -0.19 -68.90 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.20 Total: 37.89 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 4.83 Total: 16.93 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -4.83 Total: -103.41 kcal Atomic # 8 Polarization: -63.01 SS G_CDS: -2.01 Total: -65.02 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -68.71 -0.19 -68.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591995755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.024 kcal (2) G-P(sol) polarization free energy of solvation -68.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds