Wall clock time and date at job start Tue Mar 31 2020 05:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46726 * 2 1 4 4 N 1.46500 * 109.46912 * 120.00252 * 2 1 3 5 5 C 1.34778 * 119.99925 * 274.99604 * 4 2 1 6 6 O 1.21585 * 119.99871 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99960 * 180.02562 * 5 4 2 8 8 C 1.47428 * 125.64698 * 0.02894 * 7 5 4 9 9 C 1.54912 * 104.82814 * 204.08801 * 8 7 5 10 10 C 1.55153 * 101.58404 * 322.99223 * 9 8 7 11 11 O 1.42901 * 110.71772 * 277.13705 * 10 9 8 12 12 C 1.50703 * 110.71850 * 154.04407 * 10 9 8 13 13 H 1.08005 * 119.99651 * 266.58229 * 12 10 9 14 14 C 1.37876 * 120.00098 * 86.59030 * 12 10 9 15 15 N 1.31510 * 119.99873 * 174.93580 * 14 12 10 16 16 Si 1.86801 * 119.99981 * 354.93108 * 14 12 10 17 17 H 1.48497 * 109.46897 * 84.83094 * 16 14 12 18 18 H 1.48502 * 109.46907 * 204.83019 * 16 14 12 19 19 H 1.48501 * 109.47039 * 324.82728 * 16 14 12 20 20 C 1.47020 * 125.65027 * 179.71914 * 7 5 4 21 21 C 1.53000 * 109.47080 * 239.99976 * 2 1 3 22 22 C 1.53780 * 113.61512 * 175.04242 * 21 2 1 23 23 C 1.53780 * 87.17140 * 219.98073 * 22 21 2 24 24 C 1.53784 * 113.61294 * 77.54522 * 21 2 1 25 25 H 1.08997 * 109.46784 * 304.74433 * 1 2 3 26 26 H 1.08997 * 109.46928 * 64.74944 * 1 2 3 27 27 H 1.09007 * 109.46770 * 184.74531 * 1 2 3 28 28 H 0.96999 * 119.99888 * 95.00651 * 4 2 1 29 29 H 1.09001 * 110.36543 * 322.92706 * 8 7 5 30 30 H 1.08993 * 110.36569 * 85.25673 * 8 7 5 31 31 H 1.09005 * 111.00160 * 81.07000 * 9 8 7 32 32 H 1.09005 * 111.00417 * 204.87723 * 9 8 7 33 33 H 0.96707 * 113.99523 * 184.07737 * 11 10 9 34 34 H 0.97008 * 119.99976 * 179.97438 * 15 14 12 35 35 H 1.09008 * 109.88288 * 298.39962 * 20 7 5 36 36 H 1.09002 * 109.88376 * 59.55642 * 20 7 5 37 37 H 1.09001 * 112.91073 * 306.29797 * 21 2 1 38 38 H 1.09005 * 113.61232 * 334.57105 * 22 21 2 39 39 H 1.08996 * 113.61636 * 105.38597 * 22 21 2 40 40 H 1.09006 * 113.61585 * 140.02550 * 23 22 21 41 41 H 1.09004 * 113.61609 * 270.91906 * 23 22 21 42 42 H 1.08996 * 113.61806 * 254.53119 * 24 21 2 43 43 H 1.09008 * 113.61076 * 25.34679 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1613 2.4118 7 7 2.5968 -0.6536 3.4574 8 6 2.9827 -2.0745 3.5318 9 6 2.8172 -2.4527 5.0249 10 6 3.2885 -1.1532 5.7295 11 8 4.7135 -1.1219 5.8318 12 6 2.6552 -1.0251 7.0909 13 1 1.7384 -0.4666 7.2096 14 6 3.2461 -1.6208 8.1850 15 7 2.7498 -1.4268 9.3873 16 14 4.7517 -2.7033 7.9594 17 1 5.9712 -1.8563 7.9360 18 1 4.8406 -3.6682 9.0848 19 1 4.6399 -3.4459 6.6783 20 6 2.7899 -0.0428 4.7807 21 6 2.0401 -0.7213 -1.2492 22 6 3.5689 -0.6723 -1.4079 23 6 3.3296 -0.4593 -2.9120 24 6 1.9589 0.1293 -2.5279 25 1 -0.3633 0.5857 0.8444 26 1 -0.3633 0.4384 -0.9295 27 1 -0.3633 -1.0242 0.0850 28 1 2.2491 -1.6318 1.1525 29 1 2.3218 -2.6800 2.9115 30 1 4.0194 -2.2028 3.2207 31 1 1.7750 -2.6687 5.2600 32 1 3.4575 -3.2947 5.2879 33 1 5.0562 -0.3605 6.3197 34 1 3.1653 -1.8462 10.1570 35 1 3.5314 0.7536 4.7169 36 1 1.8440 0.3572 5.1460 37 1 1.6211 -1.7211 -1.3627 38 1 4.0319 0.1822 -0.9141 39 1 4.0626 -1.6152 -1.1734 40 1 4.0068 0.2658 -3.3635 41 1 3.2627 -1.3877 -3.4792 42 1 1.1528 -0.1670 -3.1990 43 1 1.9803 1.2029 -2.3402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591995757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:00 Heat of formation + Delta-G solvation = -59.336472 kcal Electronic energy + Delta-G solvation = -23107.591791 eV Core-core repulsion = 19767.351559 eV Total energy + Delta-G solvation = -3340.240232 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.18391 -39.08617 -37.65874 -34.78422 -34.58265 -32.38072 -31.01504 -29.61178 -28.24427 -26.15988 -25.55008 -25.06759 -22.71230 -21.51667 -20.08649 -19.78144 -19.29841 -17.88928 -17.46307 -16.31327 -15.50042 -15.35745 -15.16987 -15.10507 -14.51177 -14.19913 -13.78782 -13.45237 -13.13508 -12.78198 -12.75502 -12.64958 -12.47327 -12.23454 -12.08914 -11.97429 -11.63680 -11.50024 -11.29933 -11.06361 -10.72866 -10.59813 -10.52386 -10.40248 -10.33682 -10.10548 -9.69997 -9.22710 -8.91996 -8.63711 -8.60978 -8.00186 -6.22659 -4.34684 2.94526 3.39551 3.47464 3.57570 3.61669 4.18372 4.38033 4.42072 4.42598 4.52982 4.67019 4.99754 5.03626 5.14748 5.15539 5.33140 5.37572 5.47566 5.50883 5.54659 5.63104 5.64277 5.69885 5.74635 5.77106 5.87854 5.93116 6.04314 6.14676 6.17278 6.30928 6.56940 6.59272 6.68740 6.73745 6.79059 7.09775 7.35071 7.48618 8.09255 8.35588 8.65134 8.80649 8.96666 9.37291 10.86658 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034544 B = 0.003874 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.370120 B = 7225.565936 C = 7610.502366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.086 0.914 4 N -0.743 5.743 5 C 0.719 3.281 6 O -0.599 6.599 7 N -0.629 5.629 8 C 0.101 3.899 9 C -0.122 4.122 10 C 0.218 3.782 11 O -0.567 6.567 12 C -0.553 4.553 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.886 5.886 16 Si 0.940 3.060 17 H -0.289 1.289 18 H -0.322 1.322 19 H -0.266 1.266 20 C 0.114 3.886 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.143 4.143 24 C -0.129 4.129 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.393 0.607 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.374 0.626 34 H 0.267 0.733 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 -1.878 -21.433 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.066 3.934 3 H 0.104 0.896 4 N -0.399 5.399 5 C 0.421 3.579 6 O -0.478 6.478 7 N -0.366 5.366 8 C -0.023 4.023 9 C -0.160 4.160 10 C 0.178 3.822 11 O -0.375 6.375 12 C -0.591 4.591 13 H 0.099 0.901 14 C -0.131 4.131 15 N -0.521 5.521 16 Si 0.774 3.226 17 H -0.216 1.216 18 H -0.253 1.253 19 H -0.192 1.192 20 C -0.009 4.009 21 C -0.139 4.139 22 C -0.171 4.171 23 C -0.181 4.181 24 C -0.167 4.167 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.226 0.774 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.223 0.777 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.055 -1.516 -21.597 21.650 hybrid contribution 0.818 -0.558 0.361 1.054 sum 0.763 -2.074 -21.236 21.350 Atomic orbital electron populations 1.22186 0.95741 1.02008 1.02232 1.20752 0.93589 0.96805 0.82237 0.89629 1.45154 1.72412 1.13517 1.08788 1.15472 0.78336 0.84503 0.79601 1.90877 1.58108 1.14413 1.84387 1.47695 1.67887 1.11356 1.09665 1.22328 0.98981 0.81629 0.99314 1.23120 1.02349 0.99372 0.91168 1.20090 0.78131 0.90184 0.93827 1.86145 1.23444 1.50008 1.77878 1.21219 1.11936 1.36414 0.89494 0.90073 1.25119 0.97948 0.95416 0.94638 1.69955 1.41084 1.42489 0.98622 0.85919 0.81545 0.79435 0.75668 1.21622 1.25311 1.19208 1.22658 1.01198 0.96949 0.80072 1.22864 0.96807 0.99949 0.94308 1.22882 0.95640 1.02418 0.96148 1.22867 0.97456 1.01081 0.96683 1.22918 0.97589 0.99868 0.96314 0.91901 0.91958 0.92732 0.77352 0.92361 0.91990 0.89735 0.89859 0.77720 0.92314 0.92536 0.91134 0.88922 0.89927 0.91558 0.91462 0.90291 0.91347 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.46 37.16 0.35 -1.46 16 2 C 0.17 2.00 2.28 -67.93 -0.15 1.84 16 3 H 0.09 1.17 7.48 -51.93 -0.39 0.78 16 4 N -0.74 -10.08 4.90 -58.67 -0.29 -10.37 16 5 C 0.72 13.16 8.45 -86.92 -0.73 12.43 16 6 O -0.60 -13.11 16.33 5.29 0.09 -13.02 16 7 N -0.63 -11.70 3.33 -176.23 -0.59 -12.29 16 8 C 0.10 1.63 6.57 -2.53 -0.02 1.62 16 9 C -0.12 -2.37 5.83 -24.58 -0.14 -2.52 16 10 C 0.22 4.78 0.70 -89.94 -0.06 4.72 16 11 O -0.57 -12.08 9.14 -35.23 -0.32 -12.40 16 12 C -0.55 -14.54 8.75 -34.44 -0.30 -14.84 16 13 H 0.08 2.35 7.80 -52.48 -0.41 1.94 16 14 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 15 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 16 Si 0.94 22.36 24.63 -169.99 -4.19 18.17 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.32 -7.91 7.11 56.52 0.40 -7.51 16 19 H -0.27 -6.09 5.12 56.52 0.29 -5.80 16 20 C 0.11 2.40 6.23 -3.06 -0.02 2.38 16 21 C -0.12 -1.04 3.18 -89.81 -0.29 -1.32 16 22 C -0.13 -1.17 7.50 -25.92 -0.19 -1.36 16 23 C -0.14 -1.04 8.10 -25.78 -0.21 -1.25 16 24 C -0.13 -0.97 7.42 -25.78 -0.19 -1.16 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.57 7.96 -51.93 -0.41 0.16 16 27 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.39 4.52 7.08 -40.82 -0.29 4.23 16 29 H 0.06 0.77 7.30 -51.93 -0.38 0.39 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.66 8.04 -51.93 -0.42 1.24 16 32 H 0.08 1.64 6.08 -51.93 -0.32 1.33 16 33 H 0.37 7.31 8.64 45.56 0.39 7.70 16 34 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.06 1.18 8.07 -51.92 -0.42 0.76 16 36 H 0.07 1.60 7.65 -51.93 -0.40 1.20 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.65 8.03 -51.92 -0.42 0.24 16 LS Contribution 337.21 15.07 5.08 5.08 Total: -1.00 -31.50 337.21 -8.00 -39.50 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.50 Total: 9.51 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.06 Total: 0.99 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.10 Total: -47.83 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.24 Total: -25.42 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.19 Total: 18.17 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.50 -8.00 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591995757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.838 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds