Wall clock time and date at job start Tue Mar 31 2020 05:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46726 * 2 1 4 4 N 1.46500 * 109.46912 * 120.00252 * 2 1 3 5 5 C 1.34778 * 119.99925 * 274.99604 * 4 2 1 6 6 O 1.21585 * 119.99871 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99960 * 180.02562 * 5 4 2 8 8 C 1.47428 * 125.64698 * 0.02894 * 7 5 4 9 9 C 1.54912 * 104.82814 * 204.08801 * 8 7 5 10 10 C 1.55153 * 101.58404 * 322.99223 * 9 8 7 11 11 O 1.42901 * 110.71772 * 277.13705 * 10 9 8 12 12 C 1.50703 * 110.71850 * 154.04407 * 10 9 8 13 13 H 1.08005 * 119.99651 * 266.58229 * 12 10 9 14 14 C 1.37876 * 120.00098 * 86.59030 * 12 10 9 15 15 N 1.31510 * 119.99873 * 174.93580 * 14 12 10 16 16 Si 1.86801 * 119.99981 * 354.93108 * 14 12 10 17 17 H 1.48497 * 109.46897 * 84.83094 * 16 14 12 18 18 H 1.48502 * 109.46907 * 204.83019 * 16 14 12 19 19 H 1.48501 * 109.47039 * 324.82728 * 16 14 12 20 20 C 1.47020 * 125.65027 * 179.71914 * 7 5 4 21 21 C 1.53000 * 109.47080 * 239.99976 * 2 1 3 22 22 C 1.53780 * 113.61512 * 175.04242 * 21 2 1 23 23 C 1.53780 * 87.17140 * 219.98073 * 22 21 2 24 24 C 1.53784 * 113.61294 * 77.54522 * 21 2 1 25 25 H 1.08997 * 109.46784 * 304.74433 * 1 2 3 26 26 H 1.08997 * 109.46928 * 64.74944 * 1 2 3 27 27 H 1.09007 * 109.46770 * 184.74531 * 1 2 3 28 28 H 0.96999 * 119.99888 * 95.00651 * 4 2 1 29 29 H 1.09001 * 110.36543 * 322.92706 * 8 7 5 30 30 H 1.08993 * 110.36569 * 85.25673 * 8 7 5 31 31 H 1.09005 * 111.00160 * 81.07000 * 9 8 7 32 32 H 1.09005 * 111.00417 * 204.87723 * 9 8 7 33 33 H 0.96707 * 113.99523 * 184.07737 * 11 10 9 34 34 H 0.97008 * 119.99976 * 179.97438 * 15 14 12 35 35 H 1.09008 * 109.88288 * 298.39962 * 20 7 5 36 36 H 1.09002 * 109.88376 * 59.55642 * 20 7 5 37 37 H 1.09001 * 112.91073 * 306.29797 * 21 2 1 38 38 H 1.09005 * 113.61232 * 334.57105 * 22 21 2 39 39 H 1.08996 * 113.61636 * 105.38597 * 22 21 2 40 40 H 1.09006 * 113.61585 * 140.02550 * 23 22 21 41 41 H 1.09004 * 113.61609 * 270.91906 * 23 22 21 42 42 H 1.08996 * 113.61806 * 254.53119 * 24 21 2 43 43 H 1.09008 * 113.61076 * 25.34679 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1613 2.4118 7 7 2.5968 -0.6536 3.4574 8 6 2.9827 -2.0745 3.5318 9 6 2.8172 -2.4527 5.0249 10 6 3.2885 -1.1532 5.7295 11 8 4.7135 -1.1219 5.8318 12 6 2.6552 -1.0251 7.0909 13 1 1.7384 -0.4666 7.2096 14 6 3.2461 -1.6208 8.1850 15 7 2.7498 -1.4268 9.3873 16 14 4.7517 -2.7033 7.9594 17 1 5.9712 -1.8563 7.9360 18 1 4.8406 -3.6682 9.0848 19 1 4.6399 -3.4459 6.6783 20 6 2.7899 -0.0428 4.7807 21 6 2.0401 -0.7213 -1.2492 22 6 3.5689 -0.6723 -1.4079 23 6 3.3296 -0.4593 -2.9120 24 6 1.9589 0.1293 -2.5279 25 1 -0.3633 0.5857 0.8444 26 1 -0.3633 0.4384 -0.9295 27 1 -0.3633 -1.0242 0.0850 28 1 2.2491 -1.6318 1.1525 29 1 2.3218 -2.6800 2.9115 30 1 4.0194 -2.2028 3.2207 31 1 1.7750 -2.6687 5.2600 32 1 3.4575 -3.2947 5.2879 33 1 5.0562 -0.3605 6.3197 34 1 3.1653 -1.8462 10.1570 35 1 3.5314 0.7536 4.7169 36 1 1.8440 0.3572 5.1460 37 1 1.6211 -1.7211 -1.3627 38 1 4.0319 0.1822 -0.9141 39 1 4.0626 -1.6152 -1.1734 40 1 4.0068 0.2658 -3.3635 41 1 3.2627 -1.3877 -3.4792 42 1 1.1528 -0.1670 -3.1990 43 1 1.9803 1.2029 -2.3402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591995757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:00 Heat of formation + Delta-G solvation = -82.398059 kcal Electronic energy + Delta-G solvation = -23108.591817 eV Core-core repulsion = 19767.351559 eV Total energy + Delta-G solvation = -3341.240258 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48623 -40.11727 -39.11749 -36.36854 -35.77674 -34.45816 -32.37096 -30.96758 -29.88903 -27.25092 -26.57234 -26.20592 -24.20289 -22.53218 -21.50859 -21.16285 -20.29529 -19.60599 -18.95255 -17.51693 -17.12291 -16.81732 -16.49124 -16.25788 -15.93655 -15.29198 -15.17880 -15.04678 -14.60277 -14.26801 -14.07077 -13.91102 -13.57964 -13.30022 -13.24745 -13.18159 -13.04720 -12.76975 -12.65049 -12.34348 -12.23388 -12.15187 -11.80556 -11.44204 -11.36577 -11.22787 -11.10727 -11.08619 -10.64777 -10.43128 -10.17014 -9.45154 -8.35448 -6.51107 1.51216 1.53139 1.61093 1.74103 2.13673 2.42457 2.96592 3.00385 3.48260 3.66623 3.73823 3.82503 3.85339 4.02975 4.06063 4.29856 4.31307 4.32967 4.44176 4.47673 4.58553 4.76163 4.82703 4.88475 4.90600 4.90694 4.96595 5.05319 5.11545 5.13655 5.15990 5.20315 5.28215 5.36385 5.42983 5.50427 5.59414 5.68178 6.01608 6.12263 6.56940 6.92238 7.02636 7.26111 7.56638 8.78149 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034544 B = 0.003874 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.370120 B = 7225.565936 C = 7610.502366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.169 3.831 3 H 0.059 0.941 4 N -0.722 5.722 5 C 0.714 3.286 6 O -0.642 6.642 7 N -0.633 5.633 8 C 0.109 3.891 9 C -0.121 4.121 10 C 0.220 3.780 11 O -0.561 6.561 12 C -0.554 4.554 13 H 0.036 0.964 14 C 0.025 3.975 15 N -0.937 5.937 16 Si 1.002 2.998 17 H -0.278 1.278 18 H -0.332 1.332 19 H -0.245 1.245 20 C 0.122 3.878 21 C -0.111 4.111 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.127 4.127 25 H 0.028 0.972 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.407 0.593 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.382 0.618 34 H 0.269 0.731 35 H 0.053 0.947 36 H 0.041 0.959 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 -4.146 -24.684 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.078 0.922 4 N -0.378 5.378 5 C 0.416 3.584 6 O -0.524 6.524 7 N -0.370 5.370 8 C -0.013 4.013 9 C -0.159 4.159 10 C 0.179 3.821 11 O -0.370 6.370 12 C -0.592 4.592 13 H 0.054 0.946 14 C -0.175 4.175 15 N -0.575 5.575 16 Si 0.833 3.167 17 H -0.205 1.205 18 H -0.264 1.264 19 H -0.170 1.170 20 C -0.002 4.002 21 C -0.130 4.130 22 C -0.177 4.177 23 C -0.174 4.174 24 C -0.165 4.165 25 H 0.047 0.953 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.244 0.756 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.231 0.769 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.131 0.869 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.069 -3.810 -24.910 25.222 hybrid contribution 0.386 0.251 1.366 1.442 sum 1.455 -3.559 -23.544 23.856 Atomic orbital electron populations 1.22136 0.95151 1.02396 1.01948 1.20918 0.94012 0.95954 0.82702 0.92243 1.45045 1.71084 1.14023 1.07662 1.15680 0.78077 0.84149 0.80480 1.90849 1.59823 1.16571 1.85176 1.47637 1.68204 1.12350 1.08767 1.22425 1.01025 0.80289 0.97567 1.23035 1.01934 0.97759 0.93200 1.19927 0.78243 0.92174 0.91749 1.86111 1.22461 1.50515 1.77910 1.21406 1.10528 1.35121 0.92125 0.94572 1.25935 1.00917 0.96658 0.94013 1.70086 1.43241 1.44406 0.99738 0.84912 0.78100 0.77709 0.75958 1.20476 1.26424 1.16956 1.22305 0.99545 0.96739 0.81623 1.22870 0.96636 1.00700 0.92816 1.22881 0.95553 1.01908 0.97324 1.22860 0.97050 1.01774 0.95670 1.22927 0.98465 0.99311 0.95826 0.95297 0.89729 0.91347 0.75613 0.88355 0.90282 0.90409 0.89229 0.76881 0.92238 0.92909 0.94058 0.86878 0.92028 0.90845 0.91395 0.88739 0.89712 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 9.46 71.98 0.68 -2.58 16 2 C 0.17 3.66 2.28 44.99 0.10 3.76 16 3 H 0.06 1.63 7.48 -2.39 -0.02 1.61 16 4 N -0.72 -18.10 4.90 -457.80 -2.24 -20.34 16 5 C 0.71 25.65 8.45 179.05 1.51 27.16 16 6 O -0.64 -28.72 16.33 -3.98 -0.07 -28.78 16 7 N -0.63 -22.76 3.33 -829.74 -2.76 -25.52 16 8 C 0.11 3.15 6.57 86.86 0.57 3.72 16 9 C -0.12 -4.44 5.83 31.99 0.19 -4.25 16 10 C 0.22 9.51 0.70 -10.35 -0.01 9.51 16 11 O -0.56 -22.73 9.14 -148.98 -1.36 -24.09 16 12 C -0.55 -29.94 8.75 25.60 0.22 -29.71 16 13 H 0.04 2.23 7.80 -2.91 -0.02 2.20 16 14 C 0.02 1.36 5.46 84.66 0.46 1.83 16 15 N -0.94 -56.57 13.96 21.45 0.30 -56.27 16 16 Si 1.00 45.33 24.63 68.60 1.69 47.02 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 18 H -0.33 -15.59 7.11 99.48 0.71 -14.88 16 19 H -0.24 -10.15 5.12 99.48 0.51 -9.64 16 20 C 0.12 5.20 6.23 86.73 0.54 5.74 16 21 C -0.11 -1.57 3.18 -10.27 -0.03 -1.61 16 22 C -0.14 -2.08 7.50 31.12 0.23 -1.84 16 23 C -0.14 -1.56 8.10 31.21 0.25 -1.31 16 24 C -0.13 -1.54 7.42 31.21 0.23 -1.31 16 25 H 0.03 0.78 8.14 -2.39 -0.02 0.77 16 26 H 0.08 1.35 7.96 -2.39 -0.02 1.33 16 27 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.41 7.84 7.08 -92.71 -0.66 7.18 16 29 H 0.10 2.11 7.30 -2.39 -0.02 2.09 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 31 H 0.08 2.94 8.04 -2.38 -0.02 2.92 16 32 H 0.09 3.19 6.08 -2.38 -0.01 3.18 16 33 H 0.38 14.32 8.64 -74.05 -0.64 13.68 16 34 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 35 H 0.05 2.25 8.07 -2.38 -0.02 2.23 16 36 H 0.04 1.97 7.65 -2.39 -0.02 1.95 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.19 8.10 -2.38 -0.02 1.17 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 43 H 0.08 1.05 8.03 -2.38 -0.02 1.04 16 Total: -1.00 -71.13 337.21 0.03 -71.10 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.49 Total: 27.78 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 4.96 Total: 9.11 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -4.70 Total: -102.13 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -1.43 Total: -52.88 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.69 Total: 47.02 kcal Total: -71.13 0.03 -71.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591995757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.299 kcal (2) G-P(sol) polarization free energy of solvation -71.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds