Wall clock time and date at job start Tue Mar 31 2020 05:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 109.47104 * 2 1 4 4 O 1.42899 * 109.47316 * 239.99909 * 2 1 3 5 5 C 1.53001 * 109.47277 * 119.99309 * 2 1 3 6 6 N 1.46500 * 109.46888 * 185.00000 * 5 2 1 7 7 C 1.34783 * 119.99911 * 90.00497 * 6 5 2 8 8 O 1.21584 * 119.99878 * 177.30346 * 7 6 5 9 9 N 1.34776 * 119.99852 * 357.58373 * 7 6 5 10 10 C 1.46501 * 119.99963 * 184.69276 * 9 7 6 11 11 C 1.53000 * 109.47165 * 175.01921 * 10 9 7 12 12 C 1.50700 * 115.54839 * 306.60742 * 11 10 9 13 13 H 1.08003 * 119.99696 * 144.37221 * 12 11 10 14 14 C 1.37870 * 119.99975 * 324.37015 * 12 11 10 15 15 N 1.31511 * 120.00406 * 3.39953 * 14 12 11 16 16 Si 1.86801 * 120.00015 * 183.39937 * 14 12 11 17 17 H 1.48497 * 109.47324 * 94.99698 * 16 14 12 18 18 H 1.48497 * 109.47283 * 214.99650 * 16 14 12 19 19 H 1.48500 * 109.47447 * 334.99422 * 16 14 12 20 20 C 1.53001 * 117.49963 * 160.93613 * 11 10 9 21 21 C 1.53005 * 117.49853 * 92.27677 * 11 10 9 22 22 C 1.46494 * 120.00436 * 270.00107 * 6 5 2 23 23 C 1.53001 * 117.50117 * 197.01356 * 22 6 5 24 24 C 1.52998 * 117.50206 * 128.34941 * 22 6 5 25 25 H 1.08999 * 109.46858 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47337 * 300.00253 * 1 2 3 27 27 H 1.08999 * 109.47466 * 60.00262 * 1 2 3 28 28 H 0.96693 * 114.00174 * 59.99657 * 4 2 1 29 29 H 1.09001 * 109.46756 * 65.00628 * 5 2 1 30 30 H 1.08995 * 109.47471 * 305.00273 * 5 2 1 31 31 H 0.96998 * 120.00137 * 4.68500 * 9 7 6 32 32 H 1.08999 * 109.47111 * 295.01600 * 10 9 7 33 33 H 1.08994 * 109.46935 * 55.01731 * 10 9 7 34 34 H 0.96998 * 120.00630 * 185.00048 * 15 14 12 35 35 H 1.08995 * 117.49499 * 0.02562 * 20 11 10 36 36 H 1.09004 * 117.49586 * 145.01950 * 20 11 10 37 37 H 1.09006 * 117.49410 * 214.97706 * 21 11 10 38 38 H 1.08990 * 117.49804 * 359.97438 * 21 11 10 39 39 H 1.09005 * 115.55222 * 342.68190 * 22 6 5 40 40 H 1.08991 * 117.49956 * 0.02562 * 23 22 6 41 41 H 1.09006 * 117.49889 * 145.02272 * 23 22 6 42 42 H 1.09001 * 117.50354 * 214.98140 * 24 22 6 43 43 H 1.09000 * 117.49836 * 359.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7211 1.2493 6 7 3.5001 -0.6177 1.3109 7 6 4.0758 0.4200 1.9500 8 8 5.2865 0.4803 2.0436 9 7 3.3091 1.3879 2.4903 10 6 3.9351 2.5666 3.0943 11 6 2.8508 3.5598 3.5171 12 6 1.8720 3.9508 2.4400 13 1 0.8366 4.1293 2.6903 14 6 2.2982 4.0807 1.1353 15 7 3.5432 3.7987 0.8190 16 14 1.1073 4.6572 -0.1833 17 1 1.2434 6.1246 -0.3659 18 1 1.4141 3.9687 -1.4627 19 1 -0.2825 4.3367 0.2303 20 6 3.2316 4.6257 4.5465 21 6 2.3229 3.4618 4.9498 22 6 4.3344 -1.6421 0.6780 23 6 5.8040 -1.7147 1.0976 24 6 5.4275 -1.1689 -0.2822 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.7210 -0.2702 -1.9979 29 1 1.7517 -1.7714 1.2057 30 1 1.6054 -0.2616 2.1370 31 1 2.3428 1.3041 2.4790 32 1 4.5115 2.2641 3.9686 33 1 4.5971 3.0386 2.3683 34 1 3.8627 3.9588 -0.0827 35 1 4.2548 4.6197 4.9221 36 1 2.7738 5.6098 4.4448 37 1 1.2676 3.6807 5.1134 38 1 2.7477 2.6896 5.5910 39 1 3.8308 -2.5801 0.4443 40 1 6.1499 -1.0006 1.8448 41 1 6.2673 -2.7005 1.1394 42 1 5.6434 -1.7957 -1.1474 43 1 5.5257 -0.0953 -0.4433 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594240070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:21 Heat of formation + Delta-G solvation = -7.756920 kcal Electronic energy + Delta-G solvation = -24234.044987 eV Core-core repulsion = 20896.041412 eV Total energy + Delta-G solvation = -3338.003575 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.86087 -37.30540 -36.98609 -35.66334 -34.02157 -32.43094 -32.01091 -30.63477 -26.25249 -25.76623 -25.17525 -22.05892 -21.79698 -21.28238 -21.23208 -19.27906 -18.90986 -17.35810 -16.93147 -16.42239 -15.50772 -15.07355 -14.81044 -14.51384 -14.08005 -14.01164 -13.83217 -13.42050 -12.92070 -12.56379 -12.54218 -12.23516 -12.02819 -11.82872 -11.74381 -11.49945 -11.19396 -11.03632 -10.87776 -10.68635 -10.55834 -10.41089 -10.24782 -9.80698 -9.71678 -9.66741 -9.02898 -8.84786 -8.68524 -8.28897 -7.99044 -7.52662 -6.02000 -4.21487 3.14174 3.24501 3.25377 3.29596 4.00493 4.24441 4.35900 4.61041 4.68517 5.00865 5.12015 5.27805 5.34578 5.43543 5.45509 5.53950 5.58287 5.66339 5.80615 5.97428 6.03052 6.04998 6.10806 6.22571 6.31098 6.32977 6.52208 6.60914 6.61589 6.75187 6.89015 6.94313 7.04690 7.24435 7.36873 7.55948 7.70629 7.83773 7.87266 7.99178 8.30380 8.75394 8.97919 9.41176 9.57668 10.87251 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.008086 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.139918 B = 3461.798957 C = 4453.167560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.077 3.923 3 H 0.071 0.929 4 O -0.559 6.559 5 C 0.129 3.871 6 N -0.603 5.603 7 C 0.707 3.293 8 O -0.596 6.596 9 N -0.700 5.700 10 C 0.184 3.816 11 C 0.036 3.964 12 C -0.496 4.496 13 H 0.059 0.941 14 C 0.077 3.923 15 N -0.860 5.860 16 Si 0.884 3.116 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.198 4.198 21 C -0.213 4.213 22 C 0.108 3.892 23 C -0.206 4.206 24 C -0.184 4.184 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.371 0.629 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.390 0.610 32 H 0.015 0.985 33 H 0.111 0.889 34 H 0.261 0.739 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.148 0.852 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 -9.005 -1.630 10.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.017 3.983 3 H 0.089 0.911 4 O -0.364 6.364 5 C 0.004 3.996 6 N -0.338 5.338 7 C 0.409 3.591 8 O -0.477 6.477 9 N -0.352 5.352 10 C 0.061 3.939 11 C 0.035 3.965 12 C -0.534 4.534 13 H 0.078 0.922 14 C -0.127 4.127 15 N -0.496 5.496 16 Si 0.711 3.289 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.237 4.237 21 C -0.250 4.250 22 C 0.002 3.998 23 C -0.243 4.243 24 C -0.223 4.223 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.217 0.783 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.225 0.775 32 H 0.033 0.967 33 H 0.129 0.871 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.134 0.866 40 H 0.166 0.834 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.990 -9.368 -1.261 9.914 hybrid contribution -1.566 0.895 -1.290 2.218 sum -4.556 -8.473 -2.551 9.953 Atomic orbital electron populations 1.22464 0.96483 1.02201 1.03078 1.22395 0.92339 0.97081 0.86498 0.91109 1.86499 1.77321 1.57029 1.15564 1.21438 0.80773 1.01276 0.96088 1.46318 1.04855 1.24984 1.57627 1.15931 0.85306 0.79461 0.78385 1.90577 1.12368 1.78374 1.66395 1.44974 1.09034 1.20194 1.60976 1.20891 0.94679 0.82914 0.95434 1.19259 0.95784 0.94607 0.86807 1.20484 0.94413 1.47714 0.90754 0.92235 1.24956 0.95250 0.94410 0.98114 1.69908 1.14730 1.44986 1.19940 0.86711 0.81441 0.79260 0.81483 1.20602 1.21210 1.19741 1.22931 0.97637 0.94507 1.08613 1.22960 0.98095 1.01420 1.02562 1.21137 0.86767 0.91228 1.00644 1.24168 0.96656 1.02655 1.00812 1.23115 1.04343 1.01825 0.93024 0.92119 0.91009 0.92421 0.78290 0.90274 0.89443 0.77479 0.96714 0.87109 0.92801 0.91451 0.90268 0.90717 0.91345 0.86595 0.83440 0.90663 0.89875 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 9.53 37.16 0.35 -1.92 16 2 C 0.08 1.16 3.82 -26.73 -0.10 1.06 16 3 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 4 O -0.56 -8.18 12.88 -35.23 -0.45 -8.64 16 5 C 0.13 1.91 4.89 -4.04 -0.02 1.89 16 6 N -0.60 -10.84 2.80 -171.80 -0.48 -11.32 16 7 C 0.71 15.27 8.04 -86.91 -0.70 14.57 16 8 O -0.60 -14.47 12.21 5.29 0.06 -14.40 16 9 N -0.70 -15.06 4.88 -65.23 -0.32 -15.38 16 10 C 0.18 4.35 4.61 -4.04 -0.02 4.33 16 11 C 0.04 0.84 2.04 -155.66 -0.32 0.52 16 12 C -0.50 -12.20 8.40 -34.44 -0.29 -12.49 16 13 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 14 C 0.08 1.92 5.29 -17.82 -0.09 1.82 16 15 N -0.86 -22.38 10.16 55.43 0.56 -21.81 16 16 Si 0.88 19.41 29.54 -169.99 -5.02 14.39 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 C -0.20 -4.27 9.96 -26.69 -0.27 -4.54 16 21 C -0.21 -4.35 9.92 -26.69 -0.26 -4.62 16 22 C 0.11 1.80 6.22 -67.93 -0.42 1.38 16 23 C -0.21 -3.52 9.64 -26.69 -0.26 -3.78 16 24 C -0.18 -3.19 9.90 -26.69 -0.26 -3.45 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.37 4.25 9.08 45.56 0.41 4.67 16 29 H 0.08 1.01 8.03 -51.93 -0.42 0.59 16 30 H 0.09 1.24 6.40 -51.93 -0.33 0.91 16 31 H 0.39 7.93 5.82 -40.82 -0.24 7.70 16 32 H 0.01 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.11 3.00 5.98 -51.93 -0.31 2.69 16 34 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.12 1.66 8.09 -51.93 -0.42 1.24 16 40 H 0.15 3.04 4.98 -53.31 -0.27 2.77 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.09 1.95 7.80 -51.93 -0.41 1.55 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -28.13 347.86 -9.23 -37.37 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -6.17 Total: 19.79 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.66 Total: -5.22 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.24 Total: -48.52 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.39 Total: -23.04 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.13 -9.23 -37.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594240070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.609 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds