Wall clock time and date at job start Tue Mar 31 2020 05:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47190 * 2 1 4 4 O 1.42905 * 109.47392 * 119.99848 * 2 1 3 5 5 C 1.52997 * 109.47050 * 239.99910 * 2 1 3 6 6 H 1.09007 * 109.99622 * 176.35254 * 5 2 1 7 7 C 1.54316 * 109.77720 * 297.50601 * 5 2 1 8 8 C 1.55156 * 102.86244 * 141.88190 * 7 5 2 9 9 C 1.54912 * 101.58506 * 324.31266 * 8 7 5 10 10 N 1.47023 * 109.88458 * 55.26085 * 5 2 1 11 11 C 1.34779 * 125.64552 * 61.67424 * 10 5 2 12 12 O 1.21585 * 120.00237 * 354.21179 * 11 10 5 13 13 N 1.34779 * 119.99538 * 174.20632 * 11 10 5 14 14 C 1.46498 * 119.99711 * 185.47619 * 13 11 10 15 15 C 1.53005 * 109.47008 * 174.87996 * 14 13 11 16 16 C 1.50697 * 115.55407 * 302.24069 * 15 14 13 17 17 H 1.07995 * 119.99844 * 124.39711 * 16 15 14 18 18 C 1.37875 * 120.00213 * 304.40383 * 16 15 14 19 19 N 1.31509 * 120.00322 * 184.29990 * 18 16 15 20 20 Si 1.86806 * 119.99712 * 4.29494 * 18 16 15 21 21 H 1.48501 * 109.47088 * 95.21939 * 20 18 16 22 22 H 1.48502 * 109.46982 * 215.21630 * 20 18 16 23 23 H 1.48495 * 109.47146 * 335.21674 * 20 18 16 24 24 C 1.52999 * 117.49364 * 156.56670 * 15 14 13 25 25 C 1.53005 * 117.49323 * 87.91465 * 15 14 13 26 26 H 1.09000 * 109.47600 * 65.66568 * 1 2 3 27 27 H 1.09003 * 109.47294 * 185.66794 * 1 2 3 28 28 H 1.09003 * 109.47502 * 305.66469 * 1 2 3 29 29 H 0.96695 * 114.00227 * 300.00265 * 4 2 1 30 30 H 1.08999 * 110.91905 * 23.47657 * 7 5 2 31 31 H 1.08992 * 110.74675 * 260.21550 * 7 5 2 32 32 H 1.08996 * 111.00823 * 206.22931 * 8 7 5 33 33 H 1.09009 * 111.00037 * 82.38506 * 8 7 5 34 34 H 1.09001 * 110.36175 * 278.16285 * 9 8 7 35 35 H 1.08999 * 110.46078 * 155.89614 * 9 8 7 36 36 H 0.96997 * 120.00133 * 5.48346 * 13 11 10 37 37 H 1.08992 * 109.47445 * 294.88626 * 14 13 11 38 38 H 1.09005 * 109.46925 * 54.88882 * 14 13 11 39 39 H 0.96994 * 120.00182 * 179.97438 * 19 18 16 40 40 H 1.08993 * 117.50338 * 0.02562 * 24 15 14 41 41 H 1.09003 * 117.49325 * 145.02434 * 24 15 14 42 42 H 1.09001 * 117.49445 * 214.97823 * 25 15 14 43 43 H 1.08997 * 117.49936 * 359.96648 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0399 -0.7213 -1.2492 6 1 3.1280 -0.6702 -1.2911 7 6 1.5816 -2.1946 -1.2251 8 6 1.2469 -2.4766 -2.7137 9 6 0.6601 -1.1154 -3.1638 10 7 1.4638 -0.1044 -2.4530 11 6 1.6451 1.1724 -2.8448 12 8 2.2477 1.9484 -2.1286 13 7 1.1585 1.5889 -4.0307 14 6 1.4575 2.9401 -4.5112 15 6 0.8989 3.1138 -5.9250 16 6 1.4051 2.1311 -6.9493 17 1 0.7064 1.5325 -7.5147 18 6 2.7603 1.9962 -7.1644 19 7 3.1992 1.2016 -8.1159 20 14 3.9730 2.9423 -6.1043 21 1 4.4289 2.0803 -4.9843 22 1 5.1419 3.3438 -6.9275 23 1 3.3121 4.1549 -5.5583 24 6 0.6047 4.5388 -6.3981 25 6 -0.5486 3.5912 -6.0589 26 1 -0.3634 0.4234 -0.9363 27 1 -0.3634 -1.0227 0.1015 28 1 -0.3634 0.5992 0.8349 29 1 1.7210 -0.2702 1.9980 30 1 0.6964 -2.3167 -0.6010 31 1 2.3868 -2.8438 -0.8812 32 1 0.5057 -3.2706 -2.8038 33 1 2.1477 -2.7194 -3.2775 34 1 -0.3879 -1.0396 -2.8737 35 1 0.7642 -0.9934 -4.2419 36 1 0.6103 0.9940 -4.5659 37 1 0.9984 3.6719 -3.8467 38 1 2.5371 3.0898 -4.5263 39 1 4.1525 1.1070 -8.2675 40 1 0.8094 5.3524 -5.7024 41 1 0.7769 4.7653 -7.4503 42 1 -1.1346 3.1947 -6.8881 43 1 -1.1030 3.7809 -5.1399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596586469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:43 Heat of formation + Delta-G solvation = -43.036777 kcal Electronic energy + Delta-G solvation = -23719.525927 eV Core-core repulsion = 20379.992503 eV Total energy + Delta-G solvation = -3339.533424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32259 -38.22235 -36.94826 -36.30690 -33.45729 -32.22064 -31.30957 -31.10744 -28.10151 -26.81050 -25.16175 -23.81929 -22.20031 -21.56535 -20.69865 -19.49242 -18.79051 -17.60303 -17.09097 -16.64455 -16.34134 -15.41503 -15.34294 -14.77852 -14.35276 -14.24517 -13.91297 -13.39085 -13.15908 -13.08442 -12.86325 -12.75989 -12.35273 -12.28381 -12.05648 -11.80360 -11.70965 -11.21040 -11.05388 -10.86347 -10.67978 -10.60407 -10.46466 -10.14163 -10.00138 -9.66440 -9.52494 -9.18209 -8.80417 -8.59303 -8.52039 -8.01689 -6.20509 -4.22062 2.87666 3.31320 3.38796 3.42797 3.60708 4.19857 4.36125 4.49912 4.58394 4.65568 4.87151 4.93543 5.05553 5.10979 5.20885 5.29122 5.38767 5.53811 5.68152 5.75074 5.76009 5.86027 5.87319 5.92269 5.96637 6.03049 6.11400 6.14243 6.23038 6.26122 6.40199 6.45295 6.58535 6.68674 6.89553 7.07468 7.22456 7.45246 7.59718 7.65264 8.38446 8.49823 8.80847 9.07901 9.43473 10.90408 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020369 B = 0.005513 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.288055 B = 5077.229610 C = 5321.202421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 H 0.073 0.927 4 O -0.568 6.568 5 C 0.167 3.833 6 H 0.076 0.924 7 C -0.119 4.119 8 C -0.134 4.134 9 C 0.098 3.902 10 N -0.632 5.632 11 C 0.718 3.282 12 O -0.600 6.600 13 N -0.715 5.715 14 C 0.164 3.836 15 C -0.015 4.015 16 C -0.487 4.487 17 H 0.078 0.922 18 C 0.085 3.915 19 N -0.891 5.891 20 Si 0.877 3.123 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.255 1.255 24 C -0.190 4.190 25 C -0.182 4.182 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.376 0.624 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.403 0.597 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.266 0.734 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 -5.722 13.605 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.028 3.972 3 H 0.091 0.909 4 O -0.372 6.372 5 C 0.062 3.938 6 H 0.094 0.906 7 C -0.157 4.157 8 C -0.172 4.172 9 C -0.025 4.025 10 N -0.372 5.372 11 C 0.420 3.580 12 O -0.480 6.480 13 N -0.369 5.369 14 C 0.040 3.960 15 C -0.016 4.016 16 C -0.524 4.524 17 H 0.096 0.904 18 C -0.118 4.118 19 N -0.528 5.528 20 Si 0.707 3.293 21 H -0.204 1.204 22 H -0.224 1.224 23 H -0.180 1.180 24 C -0.229 4.229 25 C -0.219 4.219 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.223 0.777 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.239 0.761 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.738 -5.507 13.511 15.678 hybrid contribution 0.218 0.640 0.563 0.880 sum -5.520 -4.867 14.074 15.882 Atomic orbital electron populations 1.22452 0.96579 1.02013 1.02557 1.22150 0.93039 0.96692 0.85327 0.90875 1.86421 1.77303 1.57695 1.15829 1.21068 0.98017 0.91738 0.82996 0.90581 1.22633 1.02338 0.94231 0.96524 1.22793 1.01839 0.96429 0.96103 1.22306 0.94722 0.87578 0.97913 1.47499 1.54428 1.09466 1.25838 1.15526 0.79853 0.80429 0.82168 1.90851 1.48595 1.53175 1.55363 1.45017 1.55490 1.17305 1.19042 1.21227 0.99729 0.81095 0.93924 1.19579 0.94709 0.94619 0.92685 1.20232 0.92360 1.20774 1.19039 0.90379 1.24886 0.98262 0.94283 0.94402 1.69878 1.14797 1.37486 1.30595 0.87062 0.80578 0.81751 0.79937 1.20414 1.22372 1.18006 1.23060 1.04417 0.94195 1.01215 1.22780 0.91748 1.05950 1.01405 0.91383 0.91917 0.92906 0.77717 0.90190 0.90083 0.89910 0.90363 0.91712 0.89914 0.76142 0.93544 0.92289 0.92436 0.91127 0.89179 0.89671 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.10 37.15 0.34 -1.72 16 2 C 0.09 1.18 3.26 -26.74 -0.09 1.10 16 3 H 0.07 1.20 6.82 -51.93 -0.35 0.85 16 4 O -0.57 -6.68 12.90 -35.23 -0.45 -7.13 16 5 C 0.17 2.41 2.96 -66.96 -0.20 2.21 16 6 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 7 C -0.12 -1.31 5.90 -24.90 -0.15 -1.46 16 8 C -0.13 -1.40 7.08 -24.58 -0.17 -1.58 16 9 C 0.10 1.24 6.64 -2.53 -0.02 1.22 16 10 N -0.63 -10.14 2.03 -168.70 -0.34 -10.48 16 11 C 0.72 14.45 8.26 -86.91 -0.72 13.74 16 12 O -0.60 -13.93 15.26 5.29 0.08 -13.85 16 13 N -0.71 -14.45 5.33 -65.22 -0.35 -14.80 16 14 C 0.16 3.61 4.59 -4.04 -0.02 3.60 16 15 C -0.01 -0.33 0.95 -155.66 -0.15 -0.47 16 16 C -0.49 -12.72 9.04 -34.44 -0.31 -13.03 16 17 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 18 C 0.09 2.36 5.47 -17.82 -0.10 2.27 16 19 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 20 Si 0.88 22.28 24.86 -169.99 -4.23 18.05 16 21 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 23 H -0.26 -6.18 5.89 56.52 0.33 -5.85 16 24 C -0.19 -3.89 9.81 -26.70 -0.26 -4.15 16 25 C -0.18 -3.48 9.94 -26.69 -0.27 -3.74 16 26 H 0.07 0.90 7.27 -51.93 -0.38 0.52 16 27 H 0.06 0.64 6.40 -51.93 -0.33 0.31 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.38 2.88 9.08 45.56 0.41 3.29 16 30 H 0.08 0.81 5.99 -51.93 -0.31 0.49 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.13 7.18 -51.93 -0.37 0.76 16 36 H 0.40 7.59 6.67 -40.82 -0.27 7.32 16 37 H 0.05 0.98 8.11 -51.93 -0.42 0.55 16 38 H 0.06 1.45 3.11 -51.93 -0.16 1.29 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 42 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -31.93 335.87 -7.60 -39.54 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -6.04 Total: 11.01 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.11 Total: -2.02 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.08 Total: -50.66 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.37 Total: -20.98 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.23 Total: 18.05 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.93 -7.60 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596586469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.502 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds