Wall clock time and date at job start Tue Mar 31 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46519 * 2 1 4 4 O 1.42901 * 109.47276 * 240.00052 * 2 1 3 5 5 C 1.52994 * 109.47245 * 119.99764 * 2 1 3 6 6 H 1.09006 * 109.99774 * 54.05839 * 5 2 1 7 7 C 1.54313 * 109.77553 * 175.21504 * 5 2 1 8 8 C 1.55157 * 102.86598 * 141.88862 * 7 5 2 9 9 C 1.54920 * 101.58011 * 324.30289 * 8 7 5 10 10 N 1.47020 * 109.88361 * 292.96567 * 5 2 1 11 11 C 1.34781 * 125.65130 * 61.67735 * 10 5 2 12 12 O 1.21583 * 119.99705 * 5.37968 * 11 10 5 13 13 N 1.34771 * 120.00256 * 185.38012 * 11 10 5 14 14 C 1.46497 * 120.00332 * 175.00586 * 13 11 10 15 15 C 1.53002 * 109.47553 * 184.75762 * 14 13 11 16 16 C 1.50694 * 115.54934 * 306.16665 * 15 14 13 17 17 H 1.08003 * 120.00048 * 144.19944 * 16 15 14 18 18 C 1.37879 * 120.00254 * 324.20287 * 16 15 14 19 19 N 1.31512 * 119.99953 * 1.41536 * 18 16 15 20 20 Si 1.86798 * 120.00163 * 181.41873 * 18 16 15 21 21 H 1.48496 * 109.47437 * 59.99846 * 20 18 16 22 22 H 1.48505 * 109.47103 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47055 * 299.99403 * 20 18 16 24 24 C 1.53000 * 117.49797 * 160.49697 * 15 14 13 25 25 C 1.53001 * 117.49641 * 91.83746 * 15 14 13 26 26 H 1.09000 * 109.47050 * 316.71414 * 1 2 3 27 27 H 1.09000 * 109.46703 * 76.72136 * 1 2 3 28 28 H 1.08998 * 109.46589 * 196.71576 * 1 2 3 29 29 H 0.96698 * 113.99789 * 299.99964 * 4 2 1 30 30 H 1.09002 * 110.92032 * 23.46947 * 7 5 2 31 31 H 1.09007 * 110.74395 * 260.21539 * 7 5 2 32 32 H 1.08994 * 111.00424 * 206.23547 * 8 7 5 33 33 H 1.08994 * 111.03833 * 82.38569 * 8 7 5 34 34 H 1.09000 * 110.36255 * 278.17653 * 9 8 7 35 35 H 1.08992 * 110.45758 * 155.89606 * 9 8 7 36 36 H 0.97000 * 119.99902 * 354.73645 * 13 11 10 37 37 H 1.08998 * 109.47299 * 304.76517 * 14 13 11 38 38 H 1.09005 * 109.46713 * 64.76116 * 14 13 11 39 39 H 0.97001 * 120.00347 * 185.00960 * 19 18 16 40 40 H 1.09005 * 117.49886 * 0.02562 * 24 15 14 41 41 H 1.08997 * 117.49610 * 145.02248 * 24 15 14 42 42 H 1.09005 * 117.49520 * 214.98128 * 25 15 14 43 43 H 1.08996 * 117.49986 * 359.97369 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2492 6 1 1.5975 -1.7153 1.3125 7 6 3.5784 -0.8310 1.1972 8 6 3.9913 -0.6026 2.6753 9 6 2.9457 0.4454 3.1318 10 7 1.6982 0.0557 2.4497 11 6 0.4507 0.3568 2.8616 12 8 -0.5104 -0.1043 2.2769 13 7 0.2686 1.1690 3.9216 14 6 -1.0836 1.5843 4.3025 15 6 -1.0033 2.5893 5.4534 16 6 -0.2182 2.1372 6.6575 17 1 0.3735 2.8486 7.2146 18 6 -0.2551 0.8154 7.0481 19 7 -0.9532 -0.0562 6.3536 20 14 0.6863 0.2628 8.5639 21 1 0.1895 1.0019 9.7521 22 1 0.4856 -1.1945 8.7673 23 1 2.1330 0.5412 8.3769 24 6 -2.2221 3.4811 5.6987 25 6 -0.9487 4.0749 5.0913 26 1 -0.3633 0.7481 0.7046 27 1 -0.3633 0.2360 -1.0002 28 1 -0.3632 -0.9842 0.2956 29 1 1.7211 -1.5952 -1.2329 30 1 4.0022 -0.0592 0.5546 31 1 3.8836 -1.8218 0.8603 32 1 5.0021 -0.2001 2.7408 33 1 3.9008 -1.5221 3.2534 34 1 3.2508 1.4451 2.8226 35 1 2.8148 0.4069 4.2132 36 1 1.0327 1.4754 4.4347 37 1 -1.5753 2.0489 3.4479 38 1 -1.6552 0.7124 4.6208 39 1 -1.0389 -0.9699 6.6679 40 1 -3.0813 3.3515 5.0406 41 1 -2.4558 3.7411 6.7311 42 1 -0.3450 4.7253 5.7244 43 1 -0.9694 4.3361 4.0333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596586471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:45 Heat of formation + Delta-G solvation = -41.107180 kcal Electronic energy + Delta-G solvation = -23842.731660 eV Core-core repulsion = 20503.281910 eV Total energy + Delta-G solvation = -3339.449751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.12783 -37.82373 -36.62733 -36.23606 -33.13981 -32.20658 -31.21399 -30.58309 -27.92261 -25.97390 -25.22889 -23.38069 -21.73164 -21.23931 -20.96517 -19.26323 -18.97813 -17.69495 -16.87238 -16.14536 -15.75204 -15.21215 -14.77944 -14.75179 -14.20315 -14.02520 -13.72491 -13.32265 -13.01590 -12.65744 -12.61477 -12.43773 -12.10827 -11.90808 -11.64596 -11.46301 -11.16119 -11.09612 -10.95610 -10.87064 -10.68827 -10.61664 -10.52722 -10.25070 -9.80355 -9.65718 -9.15292 -8.95677 -8.85147 -8.27855 -8.14777 -7.61525 -6.01286 -4.21091 3.18449 3.21455 3.27740 3.28616 3.99209 4.27056 4.42862 4.57190 4.74246 4.82474 4.89086 5.08762 5.22750 5.30769 5.41889 5.47990 5.63215 5.72483 5.80376 5.85047 5.91915 6.02868 6.04950 6.19309 6.28670 6.31201 6.50428 6.54970 6.61975 6.64594 6.73033 6.87643 6.94969 7.11016 7.26190 7.58122 7.67690 7.74079 7.81836 7.98543 8.30974 8.74830 8.95401 9.41793 9.49368 10.88134 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018270 B = 0.005858 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.166640 B = 4778.678824 C = 5616.627838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 H 0.092 0.908 4 O -0.566 6.566 5 C 0.130 3.870 6 H 0.070 0.930 7 C -0.120 4.120 8 C -0.133 4.133 9 C 0.100 3.900 10 N -0.635 5.635 11 C 0.711 3.289 12 O -0.591 6.591 13 N -0.698 5.698 14 C 0.184 3.816 15 C 0.037 3.963 16 C -0.498 4.498 17 H 0.060 0.940 18 C 0.074 3.926 19 N -0.864 5.864 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.197 4.197 25 C -0.212 4.212 26 H 0.094 0.906 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.372 0.628 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.395 0.605 37 H 0.018 0.982 38 H 0.110 0.890 39 H 0.263 0.737 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.621 -1.422 -8.368 12.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.036 3.964 3 H 0.110 0.890 4 O -0.370 6.370 5 C 0.024 3.976 6 H 0.088 0.912 7 C -0.158 4.158 8 C -0.171 4.171 9 C -0.023 4.023 10 N -0.377 5.377 11 C 0.413 3.587 12 O -0.471 6.471 13 N -0.349 5.349 14 C 0.060 3.940 15 C 0.036 3.964 16 C -0.535 4.535 17 H 0.078 0.922 18 C -0.130 4.130 19 N -0.500 5.500 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.236 4.236 25 C -0.249 4.249 26 H 0.113 0.887 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.218 0.782 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.229 0.771 37 H 0.036 0.964 38 H 0.127 0.873 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.053 -1.347 -8.903 12.081 hybrid contribution 0.488 -0.609 1.423 1.623 sum 8.542 -1.956 -7.481 11.522 Atomic orbital electron populations 1.22922 0.94292 1.05509 1.00692 1.22383 0.94748 0.95922 0.83379 0.88966 1.86551 1.77429 1.29021 1.43986 1.22033 0.94934 0.95242 0.85372 0.91196 1.22593 0.93718 1.02802 0.96710 1.22771 0.98632 0.99561 0.96129 1.22218 0.84362 0.97719 0.98018 1.47488 1.04379 1.58966 1.26831 1.15489 0.81305 0.80266 0.81643 1.90855 1.39190 1.58161 1.58931 1.44902 1.11027 1.49962 1.28993 1.20909 0.81782 0.99078 0.92203 1.19233 0.95981 0.85980 0.95222 1.20457 1.28703 0.93514 1.10817 0.92230 1.24999 0.95236 0.96386 0.96402 1.69874 1.39439 1.04265 1.36439 0.86662 0.80303 0.77620 0.83452 1.20208 1.21264 1.20199 1.22933 0.91736 1.09144 0.99803 1.22946 1.02662 1.00770 0.98539 0.88726 0.94421 0.91808 0.78184 0.90323 0.90431 0.90128 0.90740 0.91941 0.90510 0.77069 0.96371 0.87260 0.92671 0.91469 0.90243 0.90713 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 7.71 37.16 0.29 -2.62 16 2 C 0.10 1.35 3.19 -26.73 -0.09 1.27 16 3 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 4 O -0.57 -7.09 12.85 -35.23 -0.45 -7.55 16 5 C 0.13 1.82 2.81 -66.96 -0.19 1.63 16 6 H 0.07 1.04 8.05 -51.93 -0.42 0.62 16 7 C -0.12 -1.30 6.02 -24.90 -0.15 -1.45 16 8 C -0.13 -1.43 7.08 -24.58 -0.17 -1.61 16 9 C 0.10 1.37 6.51 -2.52 -0.02 1.35 16 10 N -0.64 -10.53 3.07 -168.69 -0.52 -11.05 16 11 C 0.71 14.73 7.66 -86.92 -0.67 14.07 16 12 O -0.59 -13.64 11.76 5.29 0.06 -13.58 16 13 N -0.70 -15.03 5.15 -65.23 -0.34 -15.37 16 14 C 0.18 4.34 4.62 -4.04 -0.02 4.32 16 15 C 0.04 0.86 2.06 -155.66 -0.32 0.54 16 16 C -0.50 -12.45 8.27 -34.44 -0.28 -12.74 16 17 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 18 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 19 N -0.86 -22.82 10.27 55.43 0.57 -22.25 16 20 Si 0.89 19.81 29.54 -169.99 -5.02 14.79 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 C -0.20 -4.30 9.96 -26.69 -0.27 -4.57 16 25 C -0.21 -4.40 9.92 -26.69 -0.26 -4.67 16 26 H 0.09 1.85 5.34 -52.00 -0.28 1.57 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.11 7.18 -51.93 -0.37 0.74 16 29 H 0.37 3.42 9.05 45.56 0.41 3.83 16 30 H 0.08 0.84 7.86 -51.93 -0.41 0.43 16 31 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.13 7.44 -51.93 -0.39 0.75 16 36 H 0.39 8.29 6.48 -40.82 -0.26 8.02 16 37 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 38 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 39 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 42 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -28.11 338.05 -9.06 -37.17 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -6.22 Total: 15.43 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.24 Total: -2.69 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.28 Total: -48.67 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.39 Total: -21.12 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.11 -9.06 -37.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596586471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.939 kcal (2) G-P(sol) polarization free energy of solvation -28.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds