Wall clock time and date at job start Tue Mar 31 2020 05:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46519 * 2 1 4 4 O 1.42901 * 109.47276 * 240.00052 * 2 1 3 5 5 C 1.52994 * 109.47245 * 119.99764 * 2 1 3 6 6 H 1.09006 * 109.99774 * 54.05839 * 5 2 1 7 7 C 1.54313 * 109.77553 * 175.21504 * 5 2 1 8 8 C 1.55157 * 102.86598 * 141.88862 * 7 5 2 9 9 C 1.54920 * 101.58011 * 324.30289 * 8 7 5 10 10 N 1.47020 * 109.88361 * 292.96567 * 5 2 1 11 11 C 1.34781 * 125.65130 * 61.67735 * 10 5 2 12 12 O 1.21583 * 119.99705 * 5.37968 * 11 10 5 13 13 N 1.34771 * 120.00256 * 185.38012 * 11 10 5 14 14 C 1.46497 * 120.00332 * 175.00586 * 13 11 10 15 15 C 1.53002 * 109.47553 * 184.75762 * 14 13 11 16 16 C 1.50694 * 115.54934 * 306.16665 * 15 14 13 17 17 H 1.08003 * 120.00048 * 144.19944 * 16 15 14 18 18 C 1.37879 * 120.00254 * 324.20287 * 16 15 14 19 19 N 1.31512 * 119.99953 * 1.41536 * 18 16 15 20 20 Si 1.86798 * 120.00163 * 181.41873 * 18 16 15 21 21 H 1.48496 * 109.47437 * 59.99846 * 20 18 16 22 22 H 1.48505 * 109.47103 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47055 * 299.99403 * 20 18 16 24 24 C 1.53000 * 117.49797 * 160.49697 * 15 14 13 25 25 C 1.53001 * 117.49641 * 91.83746 * 15 14 13 26 26 H 1.09000 * 109.47050 * 316.71414 * 1 2 3 27 27 H 1.09000 * 109.46703 * 76.72136 * 1 2 3 28 28 H 1.08998 * 109.46589 * 196.71576 * 1 2 3 29 29 H 0.96698 * 113.99789 * 299.99964 * 4 2 1 30 30 H 1.09002 * 110.92032 * 23.46947 * 7 5 2 31 31 H 1.09007 * 110.74395 * 260.21539 * 7 5 2 32 32 H 1.08994 * 111.00424 * 206.23547 * 8 7 5 33 33 H 1.08994 * 111.03833 * 82.38569 * 8 7 5 34 34 H 1.09000 * 110.36255 * 278.17653 * 9 8 7 35 35 H 1.08992 * 110.45758 * 155.89606 * 9 8 7 36 36 H 0.97000 * 119.99902 * 354.73645 * 13 11 10 37 37 H 1.08998 * 109.47299 * 304.76517 * 14 13 11 38 38 H 1.09005 * 109.46713 * 64.76116 * 14 13 11 39 39 H 0.97001 * 120.00347 * 185.00960 * 19 18 16 40 40 H 1.09005 * 117.49886 * 0.02562 * 24 15 14 41 41 H 1.08997 * 117.49610 * 145.02248 * 24 15 14 42 42 H 1.09005 * 117.49520 * 214.98128 * 25 15 14 43 43 H 1.08996 * 117.49986 * 359.97369 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2492 6 1 1.5975 -1.7153 1.3125 7 6 3.5784 -0.8310 1.1972 8 6 3.9913 -0.6026 2.6753 9 6 2.9457 0.4454 3.1318 10 7 1.6982 0.0557 2.4497 11 6 0.4507 0.3568 2.8616 12 8 -0.5104 -0.1043 2.2769 13 7 0.2686 1.1690 3.9216 14 6 -1.0836 1.5843 4.3025 15 6 -1.0033 2.5893 5.4534 16 6 -0.2182 2.1372 6.6575 17 1 0.3735 2.8486 7.2146 18 6 -0.2551 0.8154 7.0481 19 7 -0.9532 -0.0562 6.3536 20 14 0.6863 0.2628 8.5639 21 1 0.1895 1.0019 9.7521 22 1 0.4856 -1.1945 8.7673 23 1 2.1330 0.5412 8.3769 24 6 -2.2221 3.4811 5.6987 25 6 -0.9487 4.0749 5.0913 26 1 -0.3633 0.7481 0.7046 27 1 -0.3633 0.2360 -1.0002 28 1 -0.3632 -0.9842 0.2956 29 1 1.7211 -1.5952 -1.2329 30 1 4.0022 -0.0592 0.5546 31 1 3.8836 -1.8218 0.8603 32 1 5.0021 -0.2001 2.7408 33 1 3.9008 -1.5221 3.2534 34 1 3.2508 1.4451 2.8226 35 1 2.8148 0.4069 4.2132 36 1 1.0327 1.4754 4.4347 37 1 -1.5753 2.0489 3.4479 38 1 -1.6552 0.7124 4.6208 39 1 -1.0389 -0.9699 6.6679 40 1 -3.0813 3.3515 5.0406 41 1 -2.4558 3.7411 6.7311 42 1 -0.3450 4.7253 5.7244 43 1 -0.9694 4.3361 4.0333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596586471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:44 Heat of formation + Delta-G solvation = -59.690333 kcal Electronic energy + Delta-G solvation = -23843.537486 eV Core-core repulsion = 20503.281910 eV Total energy + Delta-G solvation = -3340.255577 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.48553 -39.29618 -38.24360 -37.42806 -34.80612 -34.11737 -32.38575 -31.84233 -29.07559 -27.80273 -27.03313 -24.62112 -23.06810 -22.84516 -22.00616 -21.09565 -20.38497 -19.23527 -18.03689 -17.92360 -17.06891 -16.78488 -16.50273 -15.91138 -15.74092 -15.59338 -14.95899 -14.83084 -14.45507 -13.99493 -13.87945 -13.86187 -13.57546 -13.30709 -13.21515 -12.91088 -12.81953 -12.61787 -12.31746 -12.15376 -12.07875 -12.01324 -11.97279 -11.61605 -11.44961 -10.96620 -10.91264 -10.69004 -10.66952 -10.11983 -9.64122 -9.22959 -7.93082 -6.18931 1.42857 1.46141 1.52359 1.82931 2.38814 2.42833 3.00946 3.30418 3.48147 3.64492 3.71622 3.76126 3.83685 4.15887 4.20315 4.28162 4.33777 4.53014 4.54817 4.63582 4.77540 4.80161 4.81732 4.87954 4.95495 4.96275 5.05756 5.10006 5.11984 5.19193 5.28541 5.38044 5.46146 5.53115 5.60385 5.61787 6.00075 6.02836 6.29756 6.39745 6.79062 6.82638 7.32615 7.45983 7.87494 8.93157 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018270 B = 0.005858 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.166640 B = 4778.678824 C = 5616.627838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 H 0.089 0.911 4 O -0.563 6.563 5 C 0.123 3.877 6 H 0.059 0.941 7 C -0.107 4.107 8 C -0.122 4.122 9 C 0.091 3.909 10 N -0.635 5.635 11 C 0.703 3.297 12 O -0.622 6.622 13 N -0.699 5.699 14 C 0.199 3.801 15 C 0.008 3.992 16 C -0.503 4.503 17 H 0.058 0.942 18 C 0.036 3.964 19 N -0.889 5.889 20 Si 0.948 3.052 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.265 1.265 24 C -0.198 4.198 25 C -0.186 4.186 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.388 0.612 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.397 0.603 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.255 0.745 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.096 -1.096 -8.858 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 H 0.107 0.893 4 O -0.369 6.369 5 C 0.019 3.981 6 H 0.077 0.923 7 C -0.145 4.145 8 C -0.160 4.160 9 C -0.031 4.031 10 N -0.375 5.375 11 C 0.406 3.594 12 O -0.505 6.505 13 N -0.350 5.350 14 C 0.075 3.925 15 C 0.007 3.993 16 C -0.541 4.541 17 H 0.076 0.924 18 C -0.166 4.166 19 N -0.526 5.526 20 Si 0.774 3.226 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.190 1.190 24 C -0.237 4.237 25 C -0.224 4.224 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.237 0.763 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.232 0.768 37 H 0.030 0.970 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.579 -1.021 -9.405 14.192 hybrid contribution -0.316 -0.706 1.519 1.705 sum 10.262 -1.727 -7.885 13.057 Atomic orbital electron populations 1.22736 0.96361 1.03312 1.00006 1.22100 0.92780 0.96097 0.84126 0.89285 1.86524 1.77096 1.30369 1.42904 1.22247 0.97535 0.94132 0.84202 0.92329 1.22579 0.90517 1.04464 0.96956 1.22770 0.99063 0.98487 0.95662 1.22479 0.83848 0.99721 0.97064 1.47525 1.03896 1.58366 1.27679 1.15677 0.82456 0.80053 0.81253 1.90840 1.40841 1.59113 1.59682 1.44758 1.10212 1.50519 1.29504 1.20509 0.82491 0.97595 0.91928 1.19295 0.97478 0.87445 0.95058 1.20640 1.28648 0.93595 1.11198 0.92363 1.25589 0.95928 0.96473 0.98583 1.70073 1.40899 1.04023 1.37561 0.85779 0.79770 0.76550 0.80507 1.20194 1.22019 1.18960 1.22951 0.92098 1.08557 1.00101 1.22928 1.01387 0.98608 0.99439 0.92009 0.93555 0.93489 0.76319 0.89347 0.88219 0.87026 0.91051 0.90403 0.92026 0.76850 0.97002 0.90973 0.93485 0.90745 0.90381 0.89724 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.55 7.71 71.98 0.56 -4.99 16 2 C 0.11 2.96 3.19 30.59 0.10 3.06 16 3 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 4 O -0.56 -12.76 12.85 -148.98 -1.92 -14.67 16 5 C 0.12 3.30 2.81 45.34 0.13 3.43 16 6 H 0.06 1.71 8.05 -2.38 -0.02 1.69 16 7 C -0.11 -1.96 6.02 31.78 0.19 -1.77 16 8 C -0.12 -2.23 7.08 31.99 0.23 -2.01 16 9 C 0.09 2.35 6.51 86.86 0.57 2.91 16 10 N -0.63 -20.81 3.07 -805.89 -2.47 -23.28 16 11 C 0.70 29.92 7.66 179.05 1.37 31.29 16 12 O -0.62 -29.97 11.76 -3.98 -0.05 -30.02 16 13 N -0.70 -30.81 5.15 -478.54 -2.46 -33.27 16 14 C 0.20 9.70 4.62 86.38 0.40 10.10 16 15 C 0.01 0.37 2.06 -52.93 -0.11 0.27 16 16 C -0.50 -25.15 8.27 25.60 0.21 -24.93 16 17 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 18 C 0.04 1.83 5.29 84.66 0.45 2.27 16 19 N -0.89 -48.15 10.27 21.45 0.22 -47.93 16 20 Si 0.95 40.64 29.54 68.60 2.03 42.66 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 24 C -0.20 -8.56 9.96 30.62 0.30 -8.25 16 25 C -0.19 -7.50 9.92 30.62 0.30 -7.20 16 26 H 0.06 2.50 5.34 -3.48 -0.02 2.48 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.68 7.18 -2.39 -0.02 1.67 16 29 H 0.39 6.21 9.05 -74.06 -0.67 5.54 16 30 H 0.09 1.51 7.86 -2.39 -0.02 1.49 16 31 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.77 7.44 -2.39 -0.02 1.75 16 36 H 0.40 16.86 6.48 -92.71 -0.60 16.26 16 37 H 0.01 0.57 8.08 -2.39 -0.02 0.56 16 38 H 0.07 4.09 5.95 -2.38 -0.01 4.07 16 39 H 0.26 13.72 8.32 -92.71 -0.77 12.95 16 40 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 41 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 42 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 43 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -61.66 338.05 -0.22 -61.88 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: -0.26 Total: 40.45 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 4.69 Total: 4.18 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -4.71 Total: -104.49 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -1.96 Total: -44.69 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.66 kcal Total: -61.66 -0.22 -61.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596586471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.190 kcal (2) G-P(sol) polarization free energy of solvation -61.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds