Wall clock time and date at job start Tue Mar 31 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46810 * 2 1 4 4 C 1.34774 * 119.99772 * 180.02562 * 3 2 1 5 5 O 1.21278 * 119.99978 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00109 * 179.72665 * 4 3 2 7 7 C 1.52999 * 109.47593 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47271 * 180.02562 * 7 6 4 9 9 O 1.21280 * 120.00129 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99786 * 179.97438 * 8 7 6 11 11 C 1.46925 * 120.63294 * 359.97438 * 10 8 7 12 12 C 1.53190 * 108.78146 * 233.58848 * 11 10 8 13 13 C 1.53045 * 109.31054 * 305.36567 * 12 11 10 14 14 C 1.53042 * 109.53696 * 61.36171 * 13 12 11 15 15 H 1.09002 * 109.49650 * 58.58976 * 14 13 12 16 16 C 1.50698 * 109.49538 * 178.65048 * 14 13 12 17 17 H 1.07996 * 120.00195 * 5.41641 * 16 14 13 18 18 C 1.37880 * 119.99722 * 185.41886 * 16 14 13 19 19 N 1.31510 * 120.00246 * 9.53503 * 18 16 14 20 20 Si 1.86804 * 119.99874 * 189.52674 * 18 16 14 21 21 H 1.48508 * 109.46818 * 94.98925 * 20 18 16 22 22 H 1.48500 * 109.47081 * 214.99055 * 20 18 16 23 23 H 1.48498 * 109.47193 * 334.99554 * 20 18 16 24 24 C 1.46922 * 120.63035 * 179.71856 * 10 8 7 25 25 H 1.09000 * 109.47045 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47302 * 299.99730 * 1 2 3 27 27 H 1.08998 * 109.47565 * 59.99823 * 1 2 3 28 28 H 1.08996 * 109.46846 * 240.00126 * 2 1 3 29 29 H 1.08997 * 109.47040 * 120.00195 * 2 1 3 30 30 H 0.97001 * 120.00251 * 0.02562 * 3 2 1 31 31 H 1.08999 * 109.47138 * 299.99918 * 6 4 3 32 32 H 1.08996 * 109.47076 * 59.99386 * 6 4 3 33 33 H 1.09008 * 109.46758 * 299.99847 * 7 6 4 34 34 H 1.08997 * 109.46956 * 59.98977 * 7 6 4 35 35 H 1.08998 * 109.58736 * 353.37717 * 11 10 8 36 36 H 1.09007 * 109.58823 * 113.79717 * 11 10 8 37 37 H 1.09001 * 109.49845 * 65.31419 * 12 11 10 38 38 H 1.08992 * 109.49919 * 185.41485 * 12 11 10 39 39 H 1.08996 * 109.45864 * 181.38097 * 13 12 11 40 40 H 1.09001 * 109.45813 * 301.34294 * 13 12 11 41 41 H 0.97001 * 119.99974 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.58744 * 246.19833 * 24 10 8 43 43 H 1.08997 * 109.58634 * 6.62138 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 -0.0005 5 8 4.1314 0.7057 -0.0005 6 6 3.8457 3.0483 -0.0067 7 6 5.3757 3.0484 -0.0067 8 6 5.8779 4.4692 -0.0123 9 8 5.0898 5.3910 -0.0164 10 7 7.2030 4.7155 -0.0127 11 6 8.1700 3.6094 -0.0072 12 6 9.1421 3.8100 1.1596 13 6 9.7765 5.1990 1.0568 14 6 8.6852 6.2681 1.1479 15 1 8.1487 6.1609 2.0906 16 6 9.3141 7.6359 1.0797 17 1 10.3734 7.7345 0.8937 18 6 8.5372 8.7614 1.2550 19 7 7.2932 8.6444 1.6652 20 14 9.2517 10.4525 0.9099 21 1 8.9067 10.8624 -0.4752 22 1 8.6879 11.4337 1.8715 23 1 10.7285 10.4058 1.0589 24 6 7.7079 6.0952 -0.0243 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3879 2.1185 0.0004 31 1 3.4828 3.5581 -0.8992 32 1 3.4819 3.5662 0.8806 33 1 5.7390 2.5385 0.8856 34 1 5.7390 2.5306 -0.8943 35 1 7.6425 2.6635 0.1153 36 1 8.7230 3.6028 -0.9465 37 1 8.6014 3.7260 2.1023 38 1 9.9221 3.0499 1.1181 39 1 10.4870 5.3350 1.8721 40 1 10.2963 5.2911 0.1031 41 1 6.7465 9.4362 1.7881 42 1 8.2239 6.2876 -0.9650 43 1 6.8754 6.7899 0.0868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:13 Heat of formation + Delta-G solvation = -97.003270 kcal Electronic energy + Delta-G solvation = -22406.598281 eV Core-core repulsion = 19064.724694 eV Total energy + Delta-G solvation = -3341.873587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.00024 -39.20829 -36.72772 -35.50440 -33.40993 -32.68624 -31.70918 -30.70293 -29.76100 -26.23706 -24.96600 -23.92732 -22.65218 -21.79738 -20.58381 -19.55080 -18.18099 -17.40558 -16.35949 -16.23452 -16.10918 -15.71838 -15.18297 -14.93977 -14.53467 -14.16374 -13.72513 -13.65424 -13.23179 -12.99650 -12.73945 -12.62735 -12.45286 -12.16711 -12.00958 -11.85720 -11.81090 -11.73884 -11.06193 -10.96601 -10.89514 -10.51512 -10.37008 -10.22358 -9.93581 -9.85861 -9.32492 -9.27779 -9.03985 -8.87410 -8.37780 -7.73893 -6.01091 -4.05303 2.57100 2.99382 3.26298 3.32140 3.39618 3.41712 3.79319 4.44752 4.57056 4.72940 4.75815 4.97581 5.03961 5.17778 5.22359 5.30880 5.38875 5.48249 5.54827 5.57847 5.68779 5.72105 5.74579 5.94374 6.01652 6.05378 6.22587 6.25271 6.34663 6.62191 6.66486 6.86522 6.98350 7.12331 7.25387 7.31092 7.62713 7.87129 7.98925 8.10025 8.23676 8.40279 8.87334 8.99439 9.58826 11.06856 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027794 B = 0.003393 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.165654 B = 8251.197700 C = 9047.926561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.736 5.736 4 C 0.514 3.486 5 O -0.544 6.544 6 C -0.124 4.124 7 C -0.123 4.123 8 C 0.505 3.495 9 O -0.545 6.545 10 N -0.606 5.606 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.038 3.962 15 H 0.036 0.964 16 C -0.523 4.523 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.878 5.878 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.117 3.883 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.402 0.598 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.262 0.738 42 H 0.043 0.957 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 -15.728 -3.801 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.389 5.389 4 C 0.302 3.698 5 O -0.421 6.421 6 C -0.165 4.165 7 C -0.164 4.164 8 C 0.292 3.708 9 O -0.424 6.424 10 N -0.338 5.338 11 C -0.016 4.016 12 C -0.173 4.173 13 C -0.148 4.148 14 C 0.019 3.981 15 H 0.054 0.946 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.515 5.515 20 Si 0.715 3.285 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.003 4.003 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.237 0.763 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.644 -15.805 -3.756 18.892 hybrid contribution 0.059 1.250 -0.171 1.263 sum -9.586 -14.555 -3.927 17.865 Atomic orbital electron populations 1.22009 0.94509 1.03150 1.02625 1.21277 0.94171 0.83288 1.02320 1.46098 1.07436 1.08876 1.76528 1.20892 0.81970 0.91949 0.75019 1.90689 1.55291 1.46766 1.49314 1.21383 0.96441 0.92634 1.05997 1.21386 0.94621 0.95320 1.05045 1.20453 0.82681 0.90697 0.76948 1.90690 1.54740 1.46415 1.50534 1.48457 1.04707 1.09047 1.71583 1.21676 0.91482 0.89554 0.98889 1.21951 0.98128 0.98995 0.98176 1.21629 0.99184 0.93509 1.00501 1.19047 0.91526 0.92889 0.94609 0.94574 1.21059 0.94751 0.90173 1.50131 0.92393 1.25039 0.95059 0.99169 0.94558 1.69986 1.07722 1.29604 1.44141 0.86651 0.79274 0.84327 0.78203 1.20642 1.21288 1.19889 1.22245 1.00001 0.79125 0.98941 0.90881 0.91900 0.91933 0.91618 0.91585 0.76335 0.88090 0.87938 0.88651 0.88810 0.90694 0.92010 0.92094 0.92179 0.92951 0.93289 0.92789 0.93818 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.03 37.16 0.37 -0.47 16 2 C 0.11 0.90 6.39 -4.04 -0.03 0.88 16 3 N -0.74 -6.69 5.56 -60.30 -0.33 -7.02 16 4 C 0.51 6.35 7.83 -10.99 -0.09 6.26 16 5 O -0.54 -8.50 15.98 5.56 0.09 -8.41 16 6 C -0.12 -1.57 4.99 -27.88 -0.14 -1.71 16 7 C -0.12 -1.80 3.34 -27.89 -0.09 -1.89 16 8 C 0.50 9.79 7.70 -10.99 -0.08 9.70 16 9 O -0.55 -12.63 15.39 5.56 0.09 -12.55 16 10 N -0.61 -12.02 2.97 -172.53 -0.51 -12.53 16 11 C 0.11 1.70 6.34 -3.71 -0.02 1.67 16 12 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 13 C -0.11 -2.21 5.11 -26.69 -0.14 -2.35 16 14 C 0.04 0.95 2.12 -91.44 -0.19 0.76 16 15 H 0.04 1.01 8.09 -51.93 -0.42 0.59 16 16 C -0.52 -14.22 8.48 -34.44 -0.29 -14.51 16 17 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 18 C 0.07 1.81 5.24 -17.82 -0.09 1.72 16 19 N -0.88 -25.77 12.23 55.43 0.68 -25.09 16 20 Si 0.89 21.32 29.55 -169.99 -5.02 16.30 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.12 2.81 5.51 -3.50 -0.02 2.79 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.40 2.67 8.47 -40.82 -0.35 2.33 16 31 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.10 1.29 8.10 -51.93 -0.42 0.87 16 33 H 0.10 1.35 7.65 -51.92 -0.40 0.96 16 34 H 0.09 1.26 7.90 -51.93 -0.41 0.85 16 35 H 0.07 1.00 5.93 -51.93 -0.31 0.69 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 42 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.10 2.91 5.96 -51.93 -0.31 2.60 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -33.38 347.98 -7.97 -41.35 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.22 Total: 2.22 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.98 Total: 0.49 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.17 Total: -44.64 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: 0.17 Total: -20.96 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.38 -7.97 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.649 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds