Wall clock time and date at job start Tue Mar 31 2020 05:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47272 * 2 1 4 4 N 1.46499 * 109.47291 * 119.99819 * 2 1 3 5 5 C 1.46499 * 120.00157 * 305.18254 * 4 2 1 6 6 C 1.50700 * 109.47122 * 269.99769 * 5 4 2 7 7 H 1.08008 * 119.99831 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00065 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99997 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00041 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47127 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47040 * 119.99477 * 10 8 6 13 13 H 1.48494 * 109.47136 * 239.99755 * 10 8 6 14 14 C 1.34777 * 119.99801 * 125.17738 * 4 2 1 15 15 O 1.21282 * 119.99903 * 175.45821 * 14 4 2 16 16 C 1.50707 * 120.00260 * 355.46154 * 14 4 2 17 17 H 1.08993 * 109.46548 * 35.45330 * 16 14 4 18 18 C 1.53001 * 109.46881 * 275.45314 * 16 14 4 19 19 C 1.53002 * 109.46960 * 155.45309 * 16 14 4 20 20 H 1.09004 * 110.21523 * 59.30348 * 19 16 14 21 21 C 1.54480 * 110.23966 * 181.22881 * 19 16 14 22 22 C 1.54628 * 101.76600 * 93.58926 * 21 19 16 23 23 C 1.51283 * 104.19425 * 24.79112 * 22 21 19 24 24 O 1.21285 * 124.93871 * 163.75183 * 23 22 21 25 25 N 1.34621 * 110.14994 * 343.77240 * 23 22 21 26 26 H 1.09008 * 109.46912 * 299.99719 * 1 2 3 27 27 H 1.09001 * 109.47254 * 59.99787 * 1 2 3 28 28 H 1.09001 * 109.46885 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47096 * 239.99784 * 2 1 3 30 30 H 1.08999 * 109.47494 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47155 * 300.00274 * 3 2 1 32 32 H 1.09005 * 109.47236 * 59.99870 * 3 2 1 33 33 H 1.09002 * 109.47099 * 149.99919 * 5 4 2 34 34 H 1.08996 * 109.47239 * 30.00089 * 5 4 2 35 35 H 0.96997 * 120.00145 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.46966 * 294.79014 * 18 16 14 37 37 H 1.09004 * 109.46598 * 54.79202 * 18 16 14 38 38 H 1.09002 * 109.46687 * 174.78898 * 18 16 14 39 39 H 1.09006 * 110.96962 * 211.70311 * 21 19 16 40 40 H 1.08997 * 110.97362 * 335.42719 * 21 19 16 41 41 H 1.08998 * 110.48847 * 143.47304 * 22 21 19 42 42 H 1.08999 * 110.48059 * 265.98609 * 22 21 19 43 43 H 0.97003 * 124.46562 * 179.52865 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5733 -0.2597 2.5238 6 6 2.5156 0.7906 3.0530 7 1 3.3616 1.1053 2.4600 8 6 2.2983 1.3489 4.2948 9 7 1.2685 0.9654 5.0172 10 14 3.4659 2.6513 4.9506 11 1 4.5357 2.9048 3.9523 12 1 2.7152 3.9076 5.2021 13 1 4.0753 2.1763 6.2187 14 6 2.8769 -1.7224 1.0752 15 8 3.3453 -2.2409 2.0665 16 6 3.2551 -2.2318 -0.2918 17 1 3.3089 -1.3957 -0.9889 18 6 2.2009 -3.2306 -0.7734 19 6 4.6178 -2.9237 -0.2192 20 1 4.5810 -3.7551 0.4848 21 6 5.0373 -3.4262 -1.6184 22 6 5.8879 -2.2433 -2.1363 23 6 6.3789 -1.5608 -0.8786 24 8 7.2935 -0.7656 -0.8317 25 7 5.6538 -1.9645 0.1813 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.5657 -1.1148 3.1997 34 1 0.5684 0.1563 2.4528 35 1 1.1154 1.3584 5.8906 36 1 2.2116 -4.1093 -0.1287 37 1 1.2160 -2.7650 -0.7370 38 1 2.4243 -3.5287 -1.7978 39 1 5.6362 -4.3339 -1.5436 40 1 4.1656 -3.5877 -2.2525 41 1 6.7291 -2.6077 -2.7260 42 1 5.2750 -1.5629 -2.7275 43 1 5.7969 -1.6617 1.0917 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599234290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:11 Heat of formation + Delta-G solvation = -82.283255 kcal Electronic energy + Delta-G solvation = -23917.361029 eV Core-core repulsion = 20576.125750 eV Total energy + Delta-G solvation = -3341.235279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.67061 -39.09883 -36.73367 -35.87897 -33.17127 -32.52899 -31.19364 -30.84431 -27.55344 -26.85725 -26.66668 -24.51407 -22.78121 -21.47246 -20.51790 -20.35199 -18.07195 -17.55995 -16.71388 -16.45193 -16.03845 -15.22473 -14.99858 -14.48268 -14.15775 -13.75870 -13.66033 -13.51913 -13.37881 -13.15569 -12.92387 -12.68970 -12.34691 -12.09992 -11.83037 -11.72005 -11.62581 -11.47970 -11.25954 -11.22084 -10.95429 -10.92229 -10.80070 -10.54552 -10.35319 -10.00655 -9.76145 -9.53633 -9.00645 -8.82149 -8.42564 -7.68280 -6.04349 -4.07228 2.69871 3.29811 3.32617 3.38442 3.44039 3.52789 3.79360 4.32376 4.40463 4.46092 4.58383 4.88821 4.94414 5.10487 5.20262 5.23126 5.30097 5.38919 5.48674 5.53077 5.54691 5.62501 5.63741 5.77114 5.82363 5.96190 5.97855 6.09651 6.19258 6.23933 6.33925 6.56996 6.92737 6.95195 7.08696 7.23837 7.43323 7.54520 7.92618 8.24520 8.38635 8.41757 8.90373 9.06450 9.57320 11.03803 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.006177 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.012767 B = 4531.950374 C = 5295.334308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 C -0.160 4.160 4 N -0.589 5.589 5 C 0.245 3.755 6 C -0.517 4.517 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.512 3.488 15 O -0.543 6.543 16 C -0.131 4.131 17 H 0.092 0.908 18 C -0.140 4.140 19 C 0.149 3.851 20 H 0.099 0.901 21 C -0.131 4.131 22 C -0.156 4.156 23 C 0.515 3.485 24 O -0.542 6.542 25 N -0.717 5.717 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -8.298 -16.697 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 C -0.218 4.218 4 N -0.320 5.320 5 C 0.126 3.874 6 C -0.556 4.556 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.721 3.279 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 C 0.298 3.702 15 O -0.421 6.421 16 C -0.153 4.153 17 H 0.110 0.890 18 C -0.198 4.198 19 C 0.042 3.958 20 H 0.117 0.883 21 C -0.168 4.168 22 C -0.197 4.197 23 C 0.301 3.699 24 O -0.420 6.420 25 N -0.372 5.372 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 0.680 -8.137 -16.058 18.015 hybrid contribution 0.494 1.045 0.919 1.477 sum 1.174 -7.092 -15.139 16.759 Atomic orbital electron populations 1.22156 0.95391 1.01802 1.02598 1.21051 0.94261 0.93958 0.88055 1.22174 1.01202 0.95972 1.02443 1.48313 1.44284 1.30643 1.08737 1.19259 0.95142 0.95791 0.77164 1.21463 1.11154 1.21003 1.01953 0.92363 1.24911 0.95485 0.97135 0.96582 1.69932 1.28416 1.43175 1.12016 0.86522 0.81057 0.81301 0.79066 1.19779 1.21026 1.20951 1.20119 0.79523 0.80605 0.89973 1.90666 1.53216 1.58803 1.39414 1.21853 0.96162 0.99939 0.97373 0.89009 1.21755 0.97978 0.98845 1.01188 1.21471 0.85891 0.91711 0.96704 0.88287 1.22757 1.00780 0.97903 0.95408 1.22335 1.01792 0.98554 0.96991 1.20969 0.81411 0.80914 0.86629 1.90744 1.29901 1.35101 1.86222 1.46402 1.33720 1.45960 1.11072 0.91087 0.92286 0.92864 0.90636 0.92999 0.93213 0.89968 0.94241 0.94697 0.92871 0.91594 0.91622 0.91431 0.89702 0.88675 0.88241 0.87943 0.74195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.06 37.16 0.34 -1.92 16 2 C 0.13 2.05 3.00 -67.94 -0.20 1.84 16 3 C -0.16 -2.63 8.61 37.16 0.32 -2.31 16 4 N -0.59 -11.68 2.39 -167.47 -0.40 -12.08 16 5 C 0.25 6.15 4.69 -5.19 -0.02 6.12 16 6 C -0.52 -14.24 7.85 -34.44 -0.27 -14.51 16 7 H 0.06 1.64 7.59 -52.48 -0.40 1.24 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 10 Si 0.89 22.09 29.54 -169.99 -5.02 17.06 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.51 9.72 6.49 -10.98 -0.07 9.65 16 15 O -0.54 -12.55 15.57 5.56 0.09 -12.46 16 16 C -0.13 -1.69 1.66 -91.77 -0.15 -1.84 16 17 H 0.09 1.12 6.23 -51.93 -0.32 0.79 16 18 C -0.14 -1.37 8.70 37.16 0.32 -1.05 16 19 C 0.15 1.79 2.59 -67.01 -0.17 1.62 16 20 H 0.10 1.25 7.88 -51.93 -0.41 0.84 16 21 C -0.13 -1.04 6.52 -25.10 -0.16 -1.21 16 22 C -0.16 -1.51 6.86 -26.74 -0.18 -1.69 16 23 C 0.51 7.73 8.44 -10.77 -0.09 7.64 16 24 O -0.54 -10.54 18.03 5.55 0.10 -10.44 16 25 N -0.72 -10.73 5.51 -52.71 -0.29 -11.02 16 26 H 0.07 1.17 6.52 -51.92 -0.34 0.83 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.96 5.13 -51.93 -0.27 0.70 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.60 6.93 -51.93 -0.36 1.24 16 33 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 34 H 0.04 0.89 6.17 -51.93 -0.32 0.57 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.67 7.94 -51.93 -0.41 0.26 16 38 H 0.07 0.45 6.36 -51.93 -0.33 0.12 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.55 5.97 -51.93 -0.31 0.24 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.42 7.21 8.88 -40.82 -0.36 6.84 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -34.25 342.09 -6.82 -41.07 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.74 Total: 4.37 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.45 Total: 3.95 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.05 Total: -48.70 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.19 Total: -22.90 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.25 -6.82 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599234290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.216 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds