Wall clock time and date at job start Tue Mar 31 2020 05:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00155 * 2 1 4 4 N 1.46502 * 109.46741 * 125.00374 * 3 2 1 5 5 C 1.46495 * 119.99900 * 281.45280 * 4 3 2 6 6 C 1.50704 * 109.47120 * 270.00074 * 5 4 3 7 7 H 1.07999 * 119.99921 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99766 * 180.02562 * 6 5 4 9 9 N 1.31503 * 119.99954 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99499 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47626 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47080 * 120.00216 * 10 8 6 13 13 H 1.48499 * 109.46986 * 239.99952 * 10 8 6 14 14 C 1.34779 * 119.99744 * 101.45252 * 4 3 2 15 15 O 1.21593 * 119.99651 * 176.68404 * 14 4 3 16 16 N 1.34773 * 120.00318 * 356.68945 * 14 4 3 17 17 C 1.47166 * 120.98783 * 342.05051 * 16 14 4 18 18 C 1.53305 * 108.41216 * 230.53493 * 17 16 14 19 19 H 1.08998 * 109.51105 * 67.64390 * 18 17 16 20 20 C 1.52999 * 109.51323 * 187.79546 * 18 17 16 21 21 O 1.42966 * 109.22107 * 307.72132 * 18 17 16 22 22 C 1.42956 * 114.16949 * 62.57715 * 21 18 17 23 23 H 1.09009 * 109.50978 * 57.34042 * 22 21 18 24 24 C 1.52999 * 109.55738 * 177.46914 * 22 21 18 25 25 C 1.47149 * 120.98271 * 162.11689 * 16 14 4 26 26 H 1.08004 * 120.00583 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.00219 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.00219 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47046 * 5.00684 * 3 2 1 30 30 H 1.09004 * 109.47290 * 245.00476 * 3 2 1 31 31 H 1.08997 * 109.47651 * 30.00378 * 5 4 3 32 32 H 1.09003 * 109.46907 * 150.00237 * 5 4 3 33 33 H 0.97005 * 119.99557 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.65200 * 110.81519 * 17 16 14 35 35 H 1.08998 * 109.71842 * 350.29316 * 17 16 14 36 36 H 1.09000 * 109.46775 * 179.74801 * 20 18 17 37 37 H 1.09005 * 109.46976 * 299.74654 * 20 18 17 38 38 H 1.08995 * 109.46798 * 59.74430 * 20 18 17 39 39 H 1.09000 * 109.47401 * 179.77398 * 24 22 21 40 40 H 1.09004 * 109.46750 * 299.77774 * 24 22 21 41 41 H 1.08998 * 109.46636 * 59.77311 * 24 22 21 42 42 H 1.08999 * 109.68567 * 9.72258 * 25 16 14 43 43 H 1.09001 * 109.68156 * 249.20025 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 2.4998 1.6246 2.4791 6 6 2.5562 3.1107 2.7229 7 1 2.9229 3.7710 1.9510 8 6 2.1396 3.6273 3.9316 9 7 1.6936 2.8232 4.8716 10 14 2.2089 5.4694 4.2334 11 1 2.7463 6.1489 3.0273 12 1 0.8427 5.9758 4.5201 13 1 3.0935 5.7480 5.3932 14 6 4.3041 1.0868 0.9323 15 8 5.0856 1.1681 1.8603 16 7 4.7482 0.7519 -0.2953 17 6 3.8209 0.2676 -1.3304 18 6 4.3848 -1.0323 -1.9156 19 1 4.3546 -1.8157 -1.1584 20 6 3.5461 -1.4551 -3.1234 21 8 5.7373 -0.8162 -2.3255 22 6 6.6240 -0.4702 -1.2588 23 1 6.6019 -1.2516 -0.4991 24 6 8.0469 -0.3257 -1.8021 25 6 6.1748 0.8584 -0.6399 26 1 -0.5401 -0.9353 -0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6212 1.4027 -0.9314 31 1 1.4698 1.2801 2.5715 32 1 3.1215 1.1121 3.2133 33 1 1.4002 3.1867 5.7218 34 1 3.7283 1.0150 -2.1183 35 1 2.8431 0.0772 -0.8882 36 1 3.9503 -2.3769 -3.5417 37 1 2.5151 -1.6197 -2.8101 38 1 3.5754 -0.6699 -3.8788 39 1 8.7211 -0.0580 -0.9885 40 1 8.3656 -1.2708 -2.2420 41 1 8.0678 0.4545 -2.5630 42 1 6.7559 1.0592 0.2601 43 1 6.3197 1.6654 -1.3581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599321092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:22 Heat of formation + Delta-G solvation = 9.825397 kcal Electronic energy + Delta-G solvation = -23781.835605 eV Core-core repulsion = 20444.594456 eV Total energy + Delta-G solvation = -3337.241148 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64130 -38.42573 -36.34041 -34.44754 -33.69448 -33.07280 -32.04912 -30.25984 -28.14317 -26.89190 -26.13410 -24.66226 -22.56757 -21.99435 -20.88140 -20.24990 -18.87931 -16.91236 -16.76327 -16.47294 -16.12912 -15.70853 -14.93672 -14.85919 -14.48257 -14.03021 -13.98383 -13.65755 -13.22827 -13.04203 -12.84343 -12.59220 -12.25922 -12.12722 -12.08992 -11.85884 -11.62093 -11.27025 -11.14109 -11.11350 -10.87961 -10.81814 -10.57289 -10.29652 -10.15058 -9.89077 -9.57305 -9.22859 -9.08458 -8.40431 -8.23331 -7.58267 -6.00865 -4.04663 2.31814 3.13295 3.31519 3.39133 3.43841 3.60945 3.81742 4.35637 4.50560 4.63815 4.93404 4.95814 5.00176 5.09421 5.14525 5.25362 5.28719 5.33364 5.39473 5.42740 5.48407 5.56937 5.73632 5.76178 5.82023 5.88535 5.95358 5.97251 5.99001 6.12486 6.19893 6.60804 6.71045 6.84609 7.00210 7.19925 7.39251 7.57263 7.71015 7.97653 8.28276 8.65581 8.96565 9.32717 9.60728 11.07202 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019472 B = 0.005341 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.610637 B = 5241.649851 C = 6258.932183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.183 4.183 3 C 0.099 3.901 4 N -0.604 5.604 5 C 0.263 3.737 6 C -0.522 4.522 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.897 3.103 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.706 3.294 15 O -0.578 6.578 16 N -0.645 5.645 17 C 0.032 3.968 18 C 0.072 3.928 19 H 0.059 0.941 20 C -0.142 4.142 21 O -0.380 6.380 22 C 0.075 3.925 23 H 0.061 0.939 24 C -0.141 4.141 25 C 0.105 3.895 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.069 0.931 35 H 0.145 0.855 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.099 0.901 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 -8.451 -16.706 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.202 4.202 3 C -0.024 4.024 4 N -0.338 5.338 5 C 0.143 3.857 6 C -0.561 4.561 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.725 3.275 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.409 3.591 15 O -0.455 6.455 16 N -0.385 5.385 17 C -0.090 4.090 18 C 0.013 3.987 19 H 0.077 0.923 20 C -0.200 4.200 21 O -0.299 6.299 22 C 0.017 3.983 23 H 0.079 0.921 24 C -0.199 4.199 25 C -0.019 4.019 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.126 0.874 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.162 0.838 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.251 -8.374 -16.107 18.443 hybrid contribution -0.151 1.022 0.523 1.157 sum 3.100 -7.353 -15.585 17.509 Atomic orbital electron populations 1.23872 0.95691 1.02007 0.98724 1.23303 0.96446 0.98979 1.01491 1.21604 0.93838 0.94880 0.92074 1.47522 1.04417 1.71349 1.10479 1.19177 0.94541 0.96175 0.75771 1.21491 1.42316 0.92367 0.99916 0.92492 1.24920 0.95260 0.98177 0.95763 1.69943 1.43465 1.34597 1.05501 0.86454 0.77496 0.85265 0.78258 1.19869 1.21021 1.20910 1.15947 0.83259 0.78087 0.81816 1.90875 1.54665 1.59408 1.40517 1.47222 1.07456 1.71912 1.11938 1.23991 0.97527 0.95465 0.92057 1.22582 0.82725 0.96439 0.96937 0.92325 1.21722 0.98914 1.02157 0.97167 1.87886 1.18288 1.90023 1.33751 1.22468 0.90289 0.96099 0.89493 0.92084 1.21709 0.93435 1.02822 1.01889 1.22053 0.81839 0.96847 1.01182 0.88525 0.88035 0.87390 0.90145 0.87581 0.94911 0.94038 0.92848 0.91329 0.83795 0.91735 0.90762 0.91637 0.90739 0.91754 0.91708 0.88257 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 14.32 29.02 0.42 -1.64 16 2 C -0.18 -2.55 8.11 -36.02 -0.29 -2.85 16 3 C 0.10 1.65 5.29 -5.19 -0.03 1.63 16 4 N -0.60 -13.25 2.46 -198.89 -0.49 -13.74 16 5 C 0.26 7.01 5.11 -5.19 -0.03 6.99 16 6 C -0.52 -15.08 9.39 -34.44 -0.32 -15.40 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 10 Si 0.90 22.19 29.54 -169.99 -5.02 17.16 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.71 15.76 8.06 -86.92 -0.70 15.06 16 15 O -0.58 -15.43 15.53 5.28 0.08 -15.35 16 16 N -0.64 -11.17 3.00 -195.70 -0.59 -11.76 16 17 C 0.03 0.43 3.81 -3.52 -0.01 0.41 16 18 C 0.07 0.86 3.40 -26.57 -0.09 0.77 16 19 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 20 C -0.14 -1.27 9.57 37.16 0.36 -0.92 16 21 O -0.38 -5.01 10.03 -35.23 -0.35 -5.36 16 22 C 0.08 0.97 3.40 -26.58 -0.09 0.88 16 23 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 24 C -0.14 -1.39 9.57 37.16 0.36 -1.04 16 25 C 0.10 1.59 5.95 -3.53 -0.02 1.57 16 26 H 0.10 1.01 8.06 -52.48 -0.42 0.59 16 27 H 0.10 1.26 7.84 -52.48 -0.41 0.85 16 28 H 0.11 1.43 7.39 -52.48 -0.39 1.04 16 29 H 0.08 1.39 7.79 -51.93 -0.40 0.99 16 30 H 0.11 1.54 3.74 -73.97 -0.28 1.26 16 31 H 0.03 0.88 8.02 -51.93 -0.42 0.47 16 32 H 0.04 1.26 7.47 -51.93 -0.39 0.87 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.07 0.86 7.59 -51.93 -0.39 0.46 16 35 H 0.15 1.90 1.55 -75.67 -0.12 1.79 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 1.66 7.12 -51.93 -0.37 1.29 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -34.16 342.57 -7.96 -42.13 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.94 Total: 0.79 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -0.56 Total: 7.12 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.34 Total: -51.66 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.27 Total: -20.71 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.16 -7.96 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599321092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.954 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds