Wall clock time and date at job start Tue Mar 31 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47230 * 2 1 4 4 C 1.46502 * 120.00039 * 268.83282 * 3 2 1 5 5 C 1.50699 * 109.46744 * 270.00051 * 4 3 2 6 6 H 1.07999 * 120.00192 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99662 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99998 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00238 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46752 * 90.00438 * 9 7 5 11 11 H 1.48501 * 109.47536 * 210.00483 * 9 7 5 12 12 H 1.48504 * 109.47305 * 330.00696 * 9 7 5 13 13 C 1.34775 * 120.00331 * 88.82636 * 3 2 1 14 14 O 1.21285 * 119.99412 * 0.68107 * 13 3 2 15 15 C 1.50697 * 120.00241 * 180.67499 * 13 3 2 16 16 H 1.09006 * 109.79058 * 70.12787 * 15 13 3 17 17 C 1.53059 * 109.63238 * 190.62319 * 15 13 3 18 18 C 1.51788 * 110.74754 * 34.78695 * 17 15 13 19 19 C 1.51993 * 113.94514 * 66.77970 * 18 17 15 20 20 C 1.52995 * 110.76487 * 293.20050 * 19 18 17 21 21 N 1.47202 * 108.79690 * 86.30037 * 20 19 18 22 22 C 1.46502 * 119.78474 * 107.93844 * 21 20 19 23 23 C 1.33366 * 120.42681 * 287.95811 * 21 20 19 24 24 O 1.21282 * 119.89106 * 180.26535 * 23 21 20 25 25 H 1.09005 * 109.47238 * 295.60922 * 1 2 3 26 26 H 1.08996 * 109.47511 * 55.60914 * 1 2 3 27 27 H 1.09004 * 109.47229 * 175.61304 * 1 2 3 28 28 H 1.08999 * 109.46911 * 240.00495 * 2 1 3 29 29 H 1.08999 * 109.47206 * 119.99668 * 2 1 3 30 30 H 1.09006 * 109.47216 * 29.99602 * 4 3 2 31 31 H 1.08993 * 109.47569 * 149.99570 * 4 3 2 32 32 H 0.96995 * 120.00546 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.22255 * 155.11145 * 17 15 13 34 34 H 1.09004 * 109.22313 * 274.50022 * 17 15 13 35 35 H 1.09000 * 108.61991 * 187.93216 * 18 17 15 36 36 H 1.09004 * 108.61797 * 305.83036 * 18 17 15 37 37 H 1.08997 * 109.45878 * 172.74773 * 19 18 17 38 38 H 1.09000 * 109.05285 * 53.39840 * 19 18 17 39 39 H 1.08998 * 109.60602 * 326.46568 * 20 19 18 40 40 H 1.09002 * 109.60673 * 206.13368 * 20 19 18 41 41 H 1.08997 * 109.46725 * 89.99678 * 22 21 20 42 42 H 1.08996 * 109.46713 * 209.99826 * 22 21 20 43 43 H 1.09003 * 109.47219 * 329.99632 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2869 2.0632 -1.2685 5 6 3.7183 1.8235 -1.6744 6 1 4.3635 1.2235 -1.0498 7 6 4.2044 2.3710 -2.8427 8 7 5.4536 2.1622 -3.1968 9 14 3.0886 3.4093 -3.9227 10 1 3.1834 4.8323 -3.5086 11 1 3.5095 3.2774 -5.3407 12 1 1.6859 2.9438 -3.7773 13 6 2.2205 2.0246 1.1669 14 8 2.0098 1.4559 2.2172 15 6 2.7083 3.4504 1.1666 16 1 1.9200 4.1101 0.8038 17 6 3.1067 3.8579 2.5871 18 6 3.7093 2.6823 3.3347 19 6 5.0444 2.2160 2.7777 20 6 4.8701 1.6186 1.3800 21 7 4.9317 2.7050 0.3887 22 6 6.1071 2.8353 -0.4761 23 6 3.9247 3.5718 0.2731 24 8 3.9836 4.4604 -0.5502 25 1 -0.3634 0.4442 0.9267 26 1 -0.3634 0.5804 -0.8480 27 1 -0.3634 -1.0247 -0.0786 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6208 1.6739 -2.0385 31 1 2.1175 3.1332 -1.1487 32 1 5.7956 2.5471 -4.0188 33 1 3.8382 4.6645 2.5373 34 1 2.2232 4.2073 3.1214 35 1 3.8489 2.9676 4.3774 36 1 3.0090 1.8481 3.2940 37 1 5.4703 1.4616 3.4392 38 1 5.7233 3.0668 2.7216 39 1 3.9042 1.1178 1.3141 40 1 5.6678 0.9014 1.1866 41 1 5.9536 2.2571 -1.3872 42 1 6.2553 3.8844 -0.7320 43 1 6.9868 2.4613 0.0477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602080798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:36 Heat of formation + Delta-G solvation = -13.295236 kcal Electronic energy + Delta-G solvation = -25814.657168 eV Core-core repulsion = 22476.413434 eV Total energy + Delta-G solvation = -3338.243734 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.07974 -38.15960 -36.31557 -35.10386 -33.64238 -32.72529 -31.38628 -30.15902 -27.93468 -27.17399 -24.83239 -23.67805 -22.67406 -22.43639 -20.46796 -19.08859 -18.03346 -17.10818 -16.95247 -16.06918 -15.75260 -15.06674 -14.59506 -14.26485 -14.07376 -13.75619 -13.43235 -13.26587 -13.04926 -12.81013 -12.49804 -12.32746 -12.09833 -11.92982 -11.75121 -11.57718 -11.26325 -11.01463 -10.83129 -10.77089 -10.68459 -10.54918 -10.39668 -10.32682 -10.20640 -10.05216 -9.55625 -8.73662 -8.49581 -8.41600 -7.74795 -7.40407 -6.12810 -4.13614 3.01088 3.29896 3.34522 3.47076 3.62475 3.76961 4.09074 4.41884 5.03363 5.09460 5.18032 5.20956 5.34374 5.43819 5.54940 5.64643 5.66892 5.72909 5.86539 5.96477 6.09204 6.11473 6.15271 6.23989 6.37278 6.39229 6.42066 6.45462 6.48206 6.51870 6.58084 6.71207 6.87585 7.01202 7.34518 7.41178 7.57913 7.94243 8.06305 8.44012 8.51650 8.76034 8.85178 9.29951 9.46660 10.91266 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.010506 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.072743 B = 2664.468922 C = 3502.426264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.587 5.587 4 C 0.193 3.807 5 C -0.531 4.531 6 H 0.094 0.906 7 C 0.091 3.909 8 N -0.891 5.891 9 Si 0.872 3.128 10 H -0.265 1.265 11 H -0.290 1.290 12 H -0.272 1.272 13 C 0.530 3.470 14 O -0.548 6.548 15 C -0.133 4.133 16 H 0.116 0.884 17 C -0.085 4.085 18 C -0.190 4.190 19 C -0.131 4.131 20 C 0.098 3.902 21 N -0.572 5.572 22 C 0.054 3.946 23 C 0.552 3.448 24 O -0.546 6.546 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.267 0.733 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.152 0.848 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.152 0.848 42 H 0.051 0.949 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 -1.982 8.240 9.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.316 5.316 4 C 0.072 3.928 5 C -0.568 4.568 6 H 0.112 0.888 7 C -0.111 4.111 8 N -0.531 5.531 9 Si 0.700 3.300 10 H -0.190 1.190 11 H -0.216 1.216 12 H -0.198 1.198 13 C 0.321 3.679 14 O -0.432 6.432 15 C -0.157 4.157 16 H 0.133 0.867 17 C -0.123 4.123 18 C -0.225 4.225 19 C -0.169 4.169 20 C -0.025 4.025 21 N -0.302 5.302 22 C -0.087 4.087 23 C 0.338 3.662 24 O -0.425 6.425 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.168 0.832 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.168 0.832 42 H 0.070 0.930 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.814 -1.769 8.118 9.142 hybrid contribution -0.336 0.752 -0.694 1.077 sum -4.151 -1.018 7.425 8.567 Atomic orbital electron populations 1.22118 0.96703 1.01462 1.01976 1.21306 0.93472 0.83225 1.02939 1.48150 1.62701 1.13639 1.07114 1.20107 0.98414 0.93286 0.81001 1.21583 0.94312 1.33103 1.07832 0.88835 1.24547 0.94873 0.94838 0.96851 1.69312 1.13958 1.45692 1.24160 0.86871 0.80984 0.82744 0.79403 1.19026 1.21599 1.19755 1.19932 0.76825 0.87780 0.83367 1.90071 1.54095 1.69241 1.29776 1.21860 0.98929 0.96082 0.98843 0.86660 1.20968 1.00675 0.98553 0.92150 1.22484 0.99444 1.03033 0.97586 1.21767 0.98048 1.00480 0.96625 1.21954 1.03296 0.90095 0.87201 1.47223 1.19185 1.27835 1.35963 1.22754 0.83695 1.03825 0.98394 1.18907 0.83027 0.81890 0.82399 1.90632 1.79734 1.35911 1.36198 0.92648 0.92724 0.92182 0.90101 0.90715 0.94780 0.94457 0.92211 0.92114 0.91359 0.93570 0.83209 0.91774 0.92677 0.89852 0.90800 0.83152 0.93037 0.95354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 10.23 37.16 0.38 -1.94 16 2 C 0.11 1.87 6.12 -4.04 -0.02 1.84 16 3 N -0.59 -11.28 2.12 -175.06 -0.37 -11.65 16 4 C 0.19 4.25 3.75 -5.19 -0.02 4.23 16 5 C -0.53 -13.00 5.29 -34.44 -0.18 -13.18 16 6 H 0.09 2.41 5.16 -52.49 -0.27 2.14 16 7 C 0.09 2.36 4.61 -17.82 -0.08 2.28 16 8 N -0.89 -23.79 11.36 55.43 0.63 -23.16 16 9 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 13 C 0.53 10.01 4.03 -10.99 -0.04 9.96 16 14 O -0.55 -10.30 11.54 5.55 0.06 -10.23 16 15 C -0.13 -2.51 2.24 -92.54 -0.21 -2.72 16 16 H 0.12 2.11 7.91 -51.93 -0.41 1.70 16 17 C -0.09 -1.39 5.33 -27.32 -0.15 -1.53 16 18 C -0.19 -2.98 5.15 -27.86 -0.14 -3.13 16 19 C -0.13 -2.06 5.76 -27.25 -0.16 -2.21 16 20 C 0.10 1.78 4.91 -3.66 -0.02 1.77 16 21 N -0.57 -11.95 1.27 -181.10 -0.23 -12.18 16 22 C 0.05 1.21 9.19 59.85 0.55 1.76 16 23 C 0.55 12.09 2.95 -11.26 -0.03 12.06 16 24 O -0.55 -13.91 15.17 5.56 0.08 -13.82 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 29 H 0.07 1.20 7.45 -51.93 -0.39 0.81 16 30 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 31 H 0.04 0.88 5.03 -51.93 -0.26 0.62 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.06 0.99 7.86 -51.93 -0.41 0.58 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.15 2.61 3.88 -58.12 -0.23 2.39 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.89 8.05 -51.93 -0.42 0.47 16 39 H 0.08 1.60 3.86 -51.93 -0.20 1.40 16 40 H 0.07 1.28 7.93 -51.93 -0.41 0.86 16 41 H 0.15 3.78 2.94 -51.93 -0.15 3.63 16 42 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 43 H 0.03 0.54 8.03 -51.93 -0.42 0.13 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -27.50 307.11 -6.43 -33.93 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.44 Total: 6.82 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.13 Total: 9.19 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.03 Total: -46.99 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.15 Total: -24.06 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.50 -6.43 -33.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602080798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.635 kcal (2) G-P(sol) polarization free energy of solvation -27.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds