Wall clock time and date at job start Tue Mar 31 2020 05:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46441 * 2 1 4 4 C 1.50698 * 109.47268 * 240.00279 * 2 1 3 5 5 H 1.07995 * 119.99707 * 239.99370 * 4 2 1 6 6 C 1.37875 * 120.00223 * 59.99747 * 4 2 1 7 7 N 1.31517 * 119.99920 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00176 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47047 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47500 * 120.00170 * 8 6 4 11 11 H 1.48508 * 109.46998 * 240.00049 * 8 6 4 12 12 N 1.46497 * 109.47119 * 119.99630 * 2 1 3 13 13 C 1.46504 * 119.99642 * 60.00851 * 12 2 1 14 14 C 1.34776 * 120.00240 * 239.99918 * 12 2 1 15 15 O 1.21276 * 119.99669 * 5.77138 * 14 12 2 16 16 C 1.50704 * 119.99885 * 185.76230 * 14 12 2 17 17 H 1.08997 * 109.63068 * 274.63362 * 16 14 12 18 18 C 1.53063 * 109.63029 * 154.03143 * 16 14 12 19 19 C 1.51870 * 110.73885 * 325.20697 * 18 16 14 20 20 C 1.51779 * 113.82619 * 293.22386 * 19 18 16 21 21 C 1.52987 * 110.87894 * 66.96380 * 20 19 18 22 22 N 1.47190 * 108.66843 * 273.54123 * 21 20 19 23 23 C 1.46507 * 119.78489 * 251.96820 * 22 21 20 24 24 C 1.33367 * 120.43606 * 71.98940 * 22 21 20 25 25 O 1.21280 * 119.89699 * 179.68313 * 24 22 21 26 26 H 1.08998 * 109.47230 * 299.99321 * 1 2 3 27 27 H 1.08998 * 109.46441 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46925 * 60.00297 * 1 2 3 29 29 H 0.96999 * 120.00157 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47399 * 93.30413 * 13 12 2 31 31 H 1.08999 * 109.46912 * 213.30244 * 13 12 2 32 32 H 1.08999 * 109.47281 * 333.29965 * 13 12 2 33 33 H 1.09004 * 109.22072 * 85.54512 * 18 16 14 34 34 H 1.08996 * 109.22285 * 204.89664 * 18 16 14 35 35 H 1.08997 * 108.63379 * 172.08394 * 19 18 16 36 36 H 1.08997 * 108.47544 * 54.24894 * 19 18 16 37 37 H 1.09002 * 109.19455 * 306.60615 * 20 19 18 38 38 H 1.08998 * 109.19867 * 187.32791 * 20 19 18 39 39 H 1.09001 * 109.60492 * 153.78540 * 21 20 19 40 40 H 1.08995 * 109.60548 * 33.29554 * 21 20 19 41 41 H 1.09001 * 109.47036 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.46953 * 300.02364 * 23 22 21 43 43 H 1.09005 * 109.46685 * 60.02194 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 3.1466 -2.2868 -3.6038 10 1 1.1663 -1.5865 -4.8161 11 1 3.1467 -0.1871 -4.8165 12 7 2.0184 -0.6905 1.1962 13 6 1.6646 -2.0932 1.4279 14 6 2.7932 -0.0355 2.0833 15 8 3.0003 1.1516 1.9471 16 6 3.4022 -0.7783 3.2446 17 1 2.6886 -0.8198 4.0675 18 6 4.6775 -0.0647 3.6997 19 6 5.4071 0.5413 2.5135 20 6 5.9721 -0.4870 1.5507 21 6 4.8484 -1.2476 0.8441 22 7 4.4476 -2.3859 1.6867 23 6 4.7996 -3.7496 1.2831 24 6 3.7657 -2.1842 2.8150 25 8 3.4354 -3.1297 3.4989 26 1 -0.3633 0.5137 0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 0.7089 1.1615 -3.4844 30 1 2.4456 -2.7366 1.0230 31 1 1.5664 -2.2709 2.4989 32 1 0.7184 -2.3155 0.9345 33 1 4.4149 0.7264 4.4021 34 1 5.3323 -0.7812 4.1955 35 1 6.2263 1.1564 2.8857 36 1 4.7116 1.1812 1.9704 37 1 6.5907 -1.1938 2.1037 38 1 6.5861 0.0190 0.8056 39 1 5.2037 -1.6130 -0.1195 40 1 3.9959 -0.5850 0.6948 41 1 4.4227 -4.4561 2.0227 42 1 4.3542 -3.9676 0.3125 43 1 5.8837 -3.8396 1.2140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602094374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:39 Heat of formation + Delta-G solvation = -37.495324 kcal Electronic energy + Delta-G solvation = -25239.834367 eV Core-core repulsion = 21900.541238 eV Total energy + Delta-G solvation = -3339.293129 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.43955 -38.57271 -36.35366 -35.66141 -34.04460 -33.00834 -31.23754 -29.45206 -28.04674 -26.34076 -25.37593 -25.28405 -23.79902 -21.84413 -20.29079 -19.28424 -18.41613 -17.32218 -16.54623 -16.38800 -15.85905 -15.29908 -14.98223 -14.81161 -14.32898 -13.76859 -13.62744 -13.34947 -13.11374 -12.94575 -12.64119 -12.49094 -12.26161 -12.18518 -11.68197 -11.62566 -11.52675 -11.31538 -11.12495 -10.87522 -10.77533 -10.66185 -10.59016 -10.32506 -10.24702 -10.12879 -9.59553 -9.24439 -8.79573 -8.51119 -8.44823 -7.58623 -6.15240 -4.23753 2.77316 3.05357 3.19359 3.23205 3.28517 3.29722 3.77899 4.31575 4.55336 4.85376 4.97263 5.09941 5.15659 5.25586 5.32679 5.46252 5.56152 5.64100 5.69618 5.79746 5.86749 5.91824 5.92509 6.06710 6.10367 6.25311 6.31648 6.34776 6.45550 6.65910 6.71490 6.76466 6.86586 6.99601 7.33601 7.41264 7.54406 7.63797 7.92029 8.08802 8.30544 8.39124 8.69893 8.88045 9.43094 10.89869 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.007404 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.552984 B = 3780.797553 C = 4029.203817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.589 5.589 13 C 0.067 3.933 14 C 0.516 3.484 15 O -0.535 6.535 16 C -0.133 4.133 17 H 0.124 0.876 18 C -0.085 4.085 19 C -0.167 4.167 20 C -0.132 4.132 21 C 0.081 3.919 22 N -0.600 5.600 23 C 0.076 3.924 24 C 0.536 3.464 25 O -0.559 6.559 26 H 0.012 0.988 27 H 0.030 0.970 28 H 0.094 0.906 29 H 0.263 0.737 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.123 0.877 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.076 -4.751 7.463 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.157 3.843 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.320 5.320 13 C -0.077 4.077 14 C 0.304 3.696 15 O -0.416 6.416 16 C -0.158 4.158 17 H 0.142 0.858 18 C -0.123 4.123 19 C -0.203 4.203 20 C -0.170 4.170 21 C -0.041 4.041 22 N -0.332 5.332 23 C -0.066 4.066 24 C 0.325 3.675 25 O -0.439 6.439 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.140 0.860 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.909 -4.520 7.550 11.188 hybrid contribution 0.314 -0.659 -0.970 1.214 sum 7.223 -5.178 6.580 11.058 Atomic orbital electron populations 1.22098 0.98187 0.99451 1.00944 1.19016 0.91182 0.94416 0.79698 0.91706 1.21300 1.32061 1.12951 0.90017 0.92125 1.24877 0.94913 0.94916 0.98914 1.69885 1.36146 1.22510 1.23724 0.86481 0.78665 0.79560 0.82917 1.19836 1.20972 1.20916 1.48438 1.48482 1.11789 1.23311 1.22037 1.02148 0.83169 1.00331 1.19756 0.79467 0.87433 0.82949 1.90479 1.60545 1.15009 1.75552 1.21977 1.00667 0.93373 0.99767 0.85815 1.20985 0.93321 0.99411 0.98617 1.21882 1.01691 0.99708 0.97062 1.21719 0.97842 0.98367 0.99097 1.22526 1.00162 0.88258 0.93151 1.47680 1.54819 1.08038 1.22625 1.21715 1.00104 0.83425 1.01353 1.19823 0.76742 0.90503 0.80474 1.90684 1.55548 1.43414 1.54254 0.96872 0.95102 0.88742 0.92678 0.92140 0.92174 0.90528 0.90389 0.91868 0.92371 0.85992 0.92433 0.90831 0.89664 0.86442 0.89580 0.91832 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.96 37.16 0.33 -3.11 16 2 C 0.26 6.12 2.37 -69.08 -0.16 5.95 16 3 H 0.07 1.77 6.92 -51.93 -0.36 1.42 16 4 C -0.52 -13.05 7.93 -34.44 -0.27 -13.32 16 5 H 0.06 1.48 7.65 -52.49 -0.40 1.08 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.88 -23.81 11.32 55.43 0.63 -23.18 16 8 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.59 -11.96 1.66 -175.26 -0.29 -12.26 16 13 C 0.07 1.22 7.82 59.85 0.47 1.69 16 14 C 0.52 9.98 3.98 -10.98 -0.04 9.93 16 15 O -0.54 -11.63 12.73 5.56 0.07 -11.56 16 16 C -0.13 -2.16 2.51 -92.53 -0.23 -2.39 16 17 H 0.12 1.86 8.13 -51.93 -0.42 1.44 16 18 C -0.09 -1.20 5.26 -27.27 -0.14 -1.35 16 19 C -0.17 -2.45 5.16 -27.92 -0.14 -2.60 16 20 C -0.13 -1.84 5.74 -27.36 -0.16 -2.00 16 21 C 0.08 1.31 5.69 -3.67 -0.02 1.29 16 22 N -0.60 -9.27 1.47 -181.11 -0.27 -9.53 16 23 C 0.08 1.00 9.94 59.85 0.59 1.59 16 24 C 0.54 8.92 3.14 -11.25 -0.04 8.88 16 25 O -0.56 -10.30 15.57 5.56 0.09 -10.22 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.06 1.10 5.38 -51.93 -0.28 0.82 16 31 H 0.06 1.04 5.85 -51.93 -0.30 0.74 16 32 H 0.08 1.41 6.43 -51.93 -0.33 1.07 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.83 7.86 -51.93 -0.41 0.42 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.12 2.20 4.40 -53.69 -0.24 1.96 16 37 H 0.06 0.74 8.05 -51.93 -0.42 0.33 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.31 7.96 -51.93 -0.41 0.89 16 40 H 0.12 2.27 2.95 -51.93 -0.15 2.12 16 41 H 0.09 1.16 6.85 -51.93 -0.36 0.80 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -28.15 315.72 -6.37 -34.51 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.42 Total: 6.33 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 0.09 Total: 6.19 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.07 Total: -44.97 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.16 Total: -21.77 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.15 -6.37 -34.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602094374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.983 kcal (2) G-P(sol) polarization free energy of solvation -28.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds