Wall clock time and date at job start Tue Mar 31 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47136 * 2 1 4 4 C 1.50706 * 109.46747 * 239.99804 * 2 1 3 5 5 H 1.07995 * 119.99833 * 239.99973 * 4 2 1 6 6 C 1.37877 * 119.99507 * 60.00304 * 4 2 1 7 7 N 1.31504 * 120.00414 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47250 * 59.99968 * 8 6 4 10 10 H 1.48507 * 109.46666 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47196 * 299.99424 * 8 6 4 12 12 N 1.46504 * 109.47329 * 120.00258 * 2 1 3 13 13 C 1.46495 * 119.99874 * 59.99467 * 12 2 1 14 14 C 1.34776 * 119.99793 * 239.99666 * 12 2 1 15 15 O 1.21284 * 119.99752 * 3.16173 * 14 12 2 16 16 C 1.50699 * 119.99587 * 183.16008 * 14 12 2 17 17 H 1.08990 * 109.63298 * 83.36161 * 16 14 12 18 18 C 1.53069 * 109.79481 * 203.85935 * 16 14 12 19 19 C 1.51789 * 110.74332 * 34.88486 * 18 16 14 20 20 C 1.51969 * 113.93332 * 66.80591 * 19 18 16 21 21 C 1.52984 * 110.75963 * 293.16140 * 20 19 18 22 22 N 1.47199 * 108.80218 * 86.31917 * 21 20 19 23 23 C 1.46498 * 119.78438 * 107.95791 * 22 21 20 24 24 C 1.33370 * 120.42847 * 287.98243 * 22 21 20 25 25 O 1.21282 * 119.89089 * 180.28220 * 24 22 21 26 26 H 1.08999 * 109.47636 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46919 * 300.00245 * 1 2 3 28 28 H 1.09000 * 109.47620 * 59.99731 * 1 2 3 29 29 H 0.97001 * 120.00116 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.47241 * 264.59755 * 13 12 2 31 31 H 1.09000 * 109.47784 * 24.59564 * 13 12 2 32 32 H 1.09003 * 109.47309 * 144.59698 * 13 12 2 33 33 H 1.09002 * 109.22036 * 155.21106 * 18 16 14 34 34 H 1.08997 * 109.21912 * 274.55805 * 18 16 14 35 35 H 1.08999 * 108.61371 * 187.92972 * 19 18 16 36 36 H 1.09002 * 108.61411 * 305.68788 * 19 18 16 37 37 H 1.08995 * 109.44174 * 172.71760 * 20 19 18 38 38 H 1.08999 * 109.07136 * 53.36506 * 20 19 18 39 39 H 1.09006 * 109.60504 * 326.48990 * 21 20 19 40 40 H 1.08997 * 109.61024 * 206.15603 * 21 20 19 41 41 H 1.08995 * 109.47398 * 90.00000 * 23 22 21 42 42 H 1.09009 * 109.47391 * 210.00278 * 23 22 21 43 43 H 1.08998 * 109.47556 * 330.00285 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3211 -1.1205 -4.0080 9 1 1.8255 -2.5203 -4.0077 10 1 1.8256 -0.4206 -5.2205 11 1 3.8061 -1.1211 -4.0083 12 7 2.0184 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0391 1.1409 1.9211 16 6 3.3543 -0.7653 3.2766 17 1 4.2656 -1.2899 2.9898 18 6 3.6654 0.2324 4.3949 19 6 2.6487 1.3593 4.4083 20 6 1.2453 0.9190 4.7903 21 6 0.6540 0.0018 3.7180 22 7 1.0720 -1.3822 3.9944 23 6 0.0949 -2.3508 4.4975 24 6 2.3347 -1.7600 3.7902 25 8 2.6673 -2.9042 4.0164 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.7081 1.1608 -3.4844 30 1 0.7920 -2.1449 2.0795 31 1 1.4357 -2.5724 0.4760 32 1 2.5020 -2.6060 1.9009 33 1 3.6408 -0.2847 5.3542 34 1 4.6605 0.6486 4.2379 35 1 2.9794 2.1179 5.1178 36 1 2.6133 1.8078 3.4154 37 1 0.6079 1.7959 4.9029 38 1 1.2860 0.3823 5.7381 39 1 1.0184 0.3047 2.7362 40 1 -0.4338 0.0667 3.7404 41 1 -0.3828 -2.8548 3.6574 42 1 0.6012 -3.0866 5.1225 43 1 -0.6608 -1.8318 5.0871 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602094383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:41 Heat of formation + Delta-G solvation = -33.495664 kcal Electronic energy + Delta-G solvation = -25013.644193 eV Core-core repulsion = 21674.524502 eV Total energy + Delta-G solvation = -3339.119691 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.54916 -38.60861 -36.44614 -35.70937 -34.10567 -32.99094 -31.32921 -29.44570 -28.17799 -26.35395 -25.50921 -25.21779 -23.91004 -21.96495 -20.18738 -19.53106 -18.40681 -17.40410 -16.64749 -16.47336 -15.90287 -15.24811 -14.94518 -14.92663 -14.36511 -13.87247 -13.72951 -13.41067 -13.21847 -13.05694 -12.62578 -12.47756 -12.43101 -12.22785 -11.82253 -11.71511 -11.53874 -11.23970 -11.06235 -10.90389 -10.81481 -10.73406 -10.60449 -10.34081 -10.28532 -10.16572 -9.66908 -9.23648 -8.83379 -8.58891 -8.45360 -7.59381 -6.12278 -4.20318 2.70250 2.98976 3.15327 3.26211 3.30991 3.33793 3.77454 4.35739 4.47644 4.81554 4.90009 4.91888 5.16903 5.19374 5.22444 5.28802 5.41438 5.51649 5.62323 5.72261 5.76919 5.80415 5.84575 6.01179 6.05983 6.11393 6.21343 6.25246 6.39740 6.52117 6.65792 6.72773 6.81289 6.97403 7.30825 7.40177 7.43325 7.65846 7.93478 8.11798 8.21807 8.39563 8.72172 8.90027 9.46281 10.92807 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023179 B = 0.006070 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.677168 B = 4611.522060 C = 4816.991032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.587 5.587 13 C 0.057 3.943 14 C 0.516 3.484 15 O -0.535 6.535 16 C -0.135 4.135 17 H 0.126 0.874 18 C -0.085 4.085 19 C -0.170 4.170 20 C -0.131 4.131 21 C 0.083 3.917 22 N -0.606 5.606 23 C 0.082 3.918 24 C 0.539 3.461 25 O -0.554 6.554 26 H 0.029 0.971 27 H 0.011 0.989 28 H 0.094 0.906 29 H 0.264 0.736 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 -2.042 13.826 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.317 5.317 13 C -0.087 4.087 14 C 0.304 3.696 15 O -0.415 6.415 16 C -0.159 4.159 17 H 0.144 0.856 18 C -0.123 4.123 19 C -0.206 4.206 20 C -0.169 4.169 21 C -0.040 4.040 22 N -0.338 5.338 23 C -0.060 4.060 24 C 0.328 3.672 25 O -0.433 6.433 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.143 0.857 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.794 -1.916 13.677 13.926 hybrid contribution 0.222 -0.645 -0.848 1.088 sum -1.572 -2.560 12.829 13.176 Atomic orbital electron populations 1.22091 0.98038 0.99431 1.00787 1.18995 0.90967 0.94457 0.79806 0.91696 1.21279 1.32053 1.13125 0.90265 0.92266 1.24868 0.94856 0.94940 0.98938 1.69852 1.36178 1.22544 1.23951 0.86551 0.79302 0.79610 0.81926 1.20231 1.21133 1.20198 1.48421 1.48122 1.11767 1.23385 1.22254 1.00245 0.83123 1.03091 1.19723 0.79145 0.87293 0.83435 1.90450 1.60688 1.15375 1.75027 1.21989 0.99652 0.97696 0.96570 0.85590 1.20968 1.00592 0.95271 0.95489 1.21937 0.93154 0.98291 1.07245 1.21743 0.97501 0.99395 0.98286 1.22436 1.00470 0.79830 1.01265 1.47739 1.09178 1.11978 1.64907 1.21680 0.91913 0.92947 0.99454 1.19819 0.82790 0.88267 0.76346 1.90712 1.79520 1.19625 1.53486 0.95194 0.97039 0.88738 0.92578 0.92487 0.89863 0.91555 0.91899 0.90282 0.92333 0.85696 0.90795 0.92211 0.87661 0.89801 0.92378 0.90545 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.97 37.16 0.33 -2.94 16 2 C 0.26 6.26 2.62 -69.08 -0.18 6.08 16 3 H 0.07 1.81 6.90 -51.93 -0.36 1.45 16 4 C -0.53 -13.99 7.95 -34.44 -0.27 -14.27 16 5 H 0.06 1.57 7.43 -52.49 -0.39 1.18 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.41 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.59 -12.06 1.71 -175.26 -0.30 -12.36 16 13 C 0.06 1.04 7.52 59.84 0.45 1.49 16 14 C 0.52 10.04 4.02 -10.99 -0.04 10.00 16 15 O -0.53 -11.65 12.55 5.55 0.07 -11.58 16 16 C -0.13 -2.18 2.61 -92.53 -0.24 -2.42 16 17 H 0.13 1.98 8.13 -51.93 -0.42 1.56 16 18 C -0.09 -1.17 5.27 -27.31 -0.14 -1.31 16 19 C -0.17 -2.33 5.15 -27.87 -0.14 -2.47 16 20 C -0.13 -1.59 5.76 -27.26 -0.16 -1.75 16 21 C 0.08 1.13 5.45 -3.67 -0.02 1.11 16 22 N -0.61 -8.40 1.36 -181.11 -0.25 -8.65 16 23 C 0.08 0.93 9.96 59.85 0.60 1.52 16 24 C 0.54 8.64 3.17 -11.26 -0.04 8.60 16 25 O -0.55 -10.07 15.63 5.56 0.09 -9.98 16 26 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 27 H 0.01 0.22 7.82 -51.93 -0.41 -0.19 16 28 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.06 0.96 4.79 -51.93 -0.25 0.71 16 31 H 0.08 1.62 7.11 -51.93 -0.37 1.25 16 32 H 0.07 1.21 5.20 -51.93 -0.27 0.94 16 33 H 0.06 0.79 7.86 -51.93 -0.41 0.38 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.13 2.13 4.35 -54.26 -0.24 1.89 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 39 H 0.11 1.79 3.37 -51.93 -0.17 1.62 16 40 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 41 H 0.06 0.64 7.46 -51.93 -0.39 0.26 16 42 H 0.08 0.89 7.38 -51.92 -0.38 0.51 16 43 H 0.07 0.59 8.03 -51.93 -0.42 0.18 16 LS Contribution 315.45 15.07 4.75 4.75 Total: -1.00 -29.45 315.45 -6.40 -35.85 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.42 Total: 4.60 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 0.04 Total: 5.32 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.08 Total: -44.80 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.16 Total: -21.56 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.45 -6.40 -35.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602094383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.356 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds