Wall clock time and date at job start Tue Mar 31 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46646 * 2 1 4 4 C 1.46759 * 124.35202 * 90.00377 * 3 2 1 5 5 C 1.54476 * 105.47723 * 163.00372 * 4 3 2 6 6 H 1.09005 * 110.96863 * 267.25427 * 5 4 3 7 7 C 1.50700 * 110.97501 * 143.53386 * 5 4 3 8 8 O 1.21285 * 119.99926 * 359.97438 * 7 5 4 9 9 N 1.34780 * 120.00400 * 179.97438 * 7 5 4 10 10 C 1.46491 * 120.00021 * 179.97438 * 9 7 5 11 11 C 1.50702 * 109.46957 * 269.99631 * 10 9 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.46496 * 119.99526 * 359.97438 * 9 7 5 20 20 C 1.53007 * 109.46745 * 120.00252 * 19 9 7 21 21 C 1.52998 * 109.47157 * 239.99977 * 19 9 7 22 22 C 1.54623 * 101.76675 * 25.41144 * 5 4 3 23 23 C 1.34421 * 124.35164 * 270.01910 * 3 2 1 24 24 O 1.21282 * 124.93719 * 0.39334 * 23 3 2 25 25 H 1.09002 * 109.46902 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47458 * 299.99930 * 1 2 3 27 27 H 1.08994 * 109.47077 * 60.00337 * 1 2 3 28 28 H 1.08994 * 109.47485 * 239.99626 * 2 1 3 29 29 H 1.09000 * 109.47158 * 119.99246 * 2 1 3 30 30 H 1.09001 * 110.25151 * 43.99532 * 4 3 2 31 31 H 1.09007 * 110.31951 * 282.03667 * 4 3 2 32 32 H 1.09004 * 109.47166 * 149.99897 * 10 9 7 33 33 H 1.08994 * 109.47507 * 29.99603 * 10 9 7 34 34 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.47443 * 0.02562 * 19 9 7 36 36 H 1.08996 * 109.46993 * 59.99998 * 20 19 9 37 37 H 1.08997 * 109.47185 * 179.97438 * 20 19 9 38 38 H 1.08997 * 109.46930 * 299.99857 * 20 19 9 39 39 H 1.08999 * 109.47175 * 60.00721 * 21 19 9 40 40 H 1.09006 * 109.47090 * 180.02562 * 21 19 9 41 41 H 1.08996 * 109.47391 * 300.00498 * 21 19 9 42 42 H 1.08994 * 110.48529 * 93.88053 * 22 5 4 43 43 H 1.08998 * 110.48979 * 216.52939 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2943 2.1620 1.2116 5 6 3.1738 3.3445 0.7486 6 1 4.2326 3.1044 0.8451 7 6 2.8365 4.5991 1.5123 8 8 1.9700 4.5782 2.3606 9 7 3.4979 5.7445 1.2527 10 6 3.1696 6.9641 1.9948 11 6 2.0878 7.7194 1.2665 12 1 1.6848 7.3296 0.3434 13 6 1.6081 8.9049 1.7819 14 7 2.0986 9.3793 2.9062 15 14 0.2618 9.8371 0.8832 16 1 -0.1155 9.0973 -0.3478 17 1 -0.9252 9.9660 1.7662 18 1 0.7554 11.1890 0.5170 19 6 4.5450 5.7696 0.2285 20 6 4.1683 6.7753 -0.8613 21 6 5.8728 6.1826 0.8666 22 6 2.7685 3.4758 -0.7378 23 6 2.2706 2.0965 -1.1098 24 8 2.1209 1.6945 -2.2442 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 2.8326 1.5534 1.9382 31 1 1.3642 2.5306 1.6445 32 1 4.0582 7.5903 2.0761 33 1 2.8193 6.6993 2.9924 34 1 1.7614 10.2136 3.2686 35 1 4.6462 4.7777 -0.2121 36 1 4.0668 7.7672 -0.4210 37 1 4.9475 6.7944 -1.6232 38 1 3.2223 6.4811 -1.3159 39 1 6.1412 5.4661 1.6430 40 1 6.6518 6.2017 0.1044 41 1 5.7714 7.1745 1.3070 42 1 1.9733 4.2122 -0.8528 43 1 3.6315 3.7466 -1.3461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608815006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:53 Heat of formation + Delta-G solvation = -73.175176 kcal Electronic energy + Delta-G solvation = -23531.075686 eV Core-core repulsion = 20190.235362 eV Total energy + Delta-G solvation = -3340.840323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.76798 -38.98547 -36.44100 -35.91175 -33.95765 -32.79549 -30.91207 -29.91970 -27.77429 -27.26733 -26.72971 -24.19671 -23.06111 -22.18403 -21.02108 -19.43335 -18.14027 -17.33375 -16.66092 -16.45172 -15.87578 -15.34548 -15.01229 -14.51861 -14.34930 -13.88017 -13.66098 -13.57436 -13.36260 -13.30794 -13.12872 -12.44190 -12.30271 -12.22895 -12.09121 -11.80400 -11.63111 -11.43491 -11.30481 -11.15315 -11.12578 -10.96341 -10.86200 -10.61363 -10.39843 -10.04310 -9.85286 -9.56584 -9.02454 -8.72264 -8.44946 -7.73551 -6.06614 -4.09832 2.59348 2.92567 3.22002 3.28103 3.36674 3.40464 3.74468 4.30705 4.42543 4.46633 4.81753 4.87988 4.98780 5.06795 5.14326 5.23752 5.26773 5.30571 5.44775 5.51401 5.56266 5.58722 5.64348 5.72826 5.83971 5.98372 5.98877 6.07349 6.11896 6.23675 6.33885 6.50162 6.55657 6.93524 7.03995 7.07324 7.41810 7.49721 7.89935 8.16204 8.21224 8.34654 8.84723 9.00194 9.54595 11.01593 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018058 B = 0.005112 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.208743 B = 5476.244081 C = 5952.861299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.620 5.620 4 C 0.117 3.883 5 C -0.125 4.125 6 H 0.109 0.891 7 C 0.516 3.484 8 O -0.537 6.537 9 N -0.586 5.586 10 C 0.245 3.755 11 C -0.519 4.519 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.128 3.872 20 C -0.159 4.159 21 C -0.162 4.162 22 C -0.144 4.144 23 C 0.521 3.479 24 O -0.537 6.537 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.410 -14.080 -4.721 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.354 5.354 4 C -0.006 4.006 5 C -0.147 4.147 6 H 0.127 0.873 7 C 0.301 3.699 8 O -0.414 6.414 9 N -0.317 5.317 10 C 0.127 3.873 11 C -0.558 4.558 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.024 3.976 20 C -0.216 4.216 21 C -0.221 4.221 22 C -0.184 4.184 23 C 0.309 3.691 24 O -0.414 6.414 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.130 0.870 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.836 -14.201 -4.722 15.728 hybrid contribution -0.729 0.707 -0.362 1.078 sum 4.107 -13.494 -5.084 14.994 Atomic orbital electron populations 1.22173 0.95783 1.02160 1.02844 1.21318 0.94501 0.81110 1.02902 1.48386 1.65738 1.13787 1.07504 1.22016 1.00996 0.91087 0.86521 1.22266 1.01740 0.95321 0.95351 0.87280 1.19767 0.82372 0.84073 0.83677 1.90685 1.31686 1.84937 1.34113 1.48291 1.35147 1.10775 1.37459 1.19281 0.96117 0.79568 0.92379 1.21453 1.20171 1.05706 1.08440 0.92296 1.24915 0.96754 0.97459 0.94959 1.69937 1.42814 1.21116 1.19527 0.86510 0.81966 0.79565 0.79795 1.19805 1.20979 1.21027 1.21128 0.87748 0.99480 0.89263 1.22159 1.00500 1.01729 0.97261 1.22164 0.96219 1.02972 1.00699 1.22443 1.04339 0.96294 0.95340 1.20865 0.76543 0.87362 0.84300 1.90700 1.54244 1.75346 1.21131 0.91557 0.92083 0.92223 0.90160 0.90348 0.90066 0.88793 0.94636 0.93985 0.92832 0.90495 0.89968 0.93139 0.92611 0.92902 0.92198 0.91232 0.86954 0.87283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.24 37.16 0.38 -1.32 16 2 C 0.12 1.25 6.65 -4.04 -0.03 1.23 16 3 N -0.62 -7.80 2.93 -172.42 -0.51 -8.30 16 4 C 0.12 1.47 6.71 -3.13 -0.02 1.44 16 5 C -0.12 -1.67 2.50 -90.14 -0.23 -1.90 16 6 H 0.11 1.18 7.63 -51.93 -0.40 0.79 16 7 C 0.52 9.63 6.95 -10.98 -0.08 9.56 16 8 O -0.54 -12.29 15.08 5.55 0.08 -12.20 16 9 N -0.59 -11.23 2.39 -167.47 -0.40 -11.63 16 10 C 0.25 5.97 4.59 -5.20 -0.02 5.94 16 11 C -0.52 -13.80 7.83 -34.44 -0.27 -14.07 16 12 H 0.06 1.57 7.63 -52.49 -0.40 1.17 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 15 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.13 1.91 2.77 -67.93 -0.19 1.72 16 20 C -0.16 -2.45 8.47 37.16 0.31 -2.14 16 21 C -0.16 -2.19 9.17 37.16 0.34 -1.85 16 22 C -0.14 -1.94 5.45 -26.75 -0.15 -2.08 16 23 C 0.52 7.68 8.02 -10.86 -0.09 7.59 16 24 O -0.54 -9.56 17.60 5.56 0.10 -9.46 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.84 7.93 -51.93 -0.41 0.42 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.39 6.96 -51.93 -0.36 1.03 16 32 H 0.04 0.88 6.43 -51.93 -0.33 0.54 16 33 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.08 0.94 4.22 -51.93 -0.22 0.72 16 36 H 0.08 1.52 6.92 -51.93 -0.36 1.16 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.09 6.66 -51.93 -0.35 0.74 16 42 H 0.11 1.70 7.89 -51.93 -0.41 1.29 16 43 H 0.11 1.26 6.85 -51.93 -0.36 0.91 16 LS Contribution 345.09 15.07 5.20 5.20 Total: -1.00 -32.55 345.09 -6.85 -39.40 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.92 Total: -0.08 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.13 Total: 5.71 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -0.17 Total: -44.93 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.18 Total: -21.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.55 -6.85 -39.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608815006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.778 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds