Wall clock time and date at job start Tue Mar 31 2020 05:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47017 * 2 1 4 4 C 1.46767 * 124.34920 * 269.95241 * 3 2 1 5 5 C 1.54479 * 105.47561 * 197.03222 * 4 3 2 6 6 H 1.09005 * 110.99563 * 92.71564 * 5 4 3 7 7 C 1.50693 * 110.97260 * 216.46769 * 5 4 3 8 8 O 1.21274 * 120.00089 * 18.80250 * 7 5 4 9 9 N 1.34788 * 119.99871 * 198.80732 * 7 5 4 10 10 C 1.46497 * 119.99884 * 4.90251 * 9 7 5 11 11 C 1.50694 * 109.47560 * 270.00338 * 10 9 7 12 12 H 1.08004 * 119.99723 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99978 * 180.27498 * 11 10 9 14 14 N 1.31513 * 119.99981 * 179.72515 * 13 11 10 15 15 Si 1.86802 * 120.00299 * 359.72889 * 13 11 10 16 16 H 1.48495 * 109.47281 * 89.99549 * 15 13 11 17 17 H 1.48501 * 109.47069 * 209.99947 * 15 13 11 18 18 H 1.48506 * 109.46460 * 329.99517 * 15 13 11 19 19 C 1.46494 * 119.99717 * 184.90973 * 9 7 5 20 20 C 1.52998 * 109.47393 * 298.53590 * 19 9 7 21 21 C 1.53001 * 109.47680 * 58.53863 * 19 9 7 22 22 C 1.54635 * 101.76294 * 334.58927 * 5 4 3 23 23 C 1.34413 * 124.35048 * 89.97395 * 3 2 1 24 24 O 1.21286 * 124.94395 * 359.53543 * 23 3 2 25 25 H 1.08998 * 109.47196 * 60.00584 * 1 2 3 26 26 H 1.09003 * 109.46575 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47028 * 299.99706 * 1 2 3 28 28 H 1.09001 * 109.47464 * 240.00194 * 2 1 3 29 29 H 1.08994 * 109.47727 * 119.99916 * 2 1 3 30 30 H 1.09006 * 110.24544 * 78.03823 * 4 3 2 31 31 H 1.08997 * 110.24635 * 316.03552 * 4 3 2 32 32 H 1.09004 * 109.46988 * 149.99861 * 10 9 7 33 33 H 1.09006 * 109.47312 * 30.00766 * 10 9 7 34 34 H 0.96996 * 120.00470 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.46851 * 178.53978 * 19 9 7 36 36 H 1.09007 * 109.46723 * 66.60289 * 20 19 9 37 37 H 1.08993 * 109.47584 * 186.60675 * 20 19 9 38 38 H 1.08999 * 109.47272 * 306.60746 * 20 19 9 39 39 H 1.09001 * 109.46607 * 54.65454 * 21 19 9 40 40 H 1.08993 * 109.47313 * 174.65238 * 21 19 9 41 41 H 1.09000 * 109.47170 * 294.65901 * 21 19 9 42 42 H 1.09002 * 110.48345 * 143.47614 * 22 5 4 43 43 H 1.08999 * 110.47987 * 266.11038 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2952 2.1616 -1.2117 5 6 3.1753 3.3437 -0.7485 6 1 4.2342 3.1032 -0.8439 7 6 2.8390 4.5983 -1.5125 8 8 1.7810 4.6862 -2.0987 9 7 3.7143 5.6229 -1.5446 10 6 5.0353 5.4772 -0.9282 11 6 4.9675 5.9106 0.5135 12 1 4.0337 6.2592 0.9292 13 6 6.0989 5.8669 1.3004 14 7 6.0410 6.2502 2.5571 15 14 7.7139 5.2633 0.5815 16 1 8.4597 6.4115 0.0066 17 1 8.5265 4.6311 1.6516 18 1 7.4393 4.2673 -0.4853 19 6 3.3445 6.8820 -2.1956 20 6 3.0630 6.6265 -3.6776 21 6 2.0906 7.4518 -1.5293 22 6 2.7695 3.4754 0.7378 23 6 2.2706 2.0964 1.1097 24 8 2.1196 1.6950 2.2442 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.3649 2.5307 -1.6436 31 1 2.8335 1.5525 -1.9379 32 1 5.7553 6.0985 -1.4610 33 1 5.3473 4.4341 -0.9798 34 1 6.8369 6.2198 3.1106 35 1 4.1632 7.5951 -2.0990 36 1 2.1717 6.0068 -3.7766 37 1 2.9030 7.5770 -4.1863 38 1 3.9138 6.1133 -4.1259 39 1 2.2598 7.5450 -0.4565 40 1 1.8702 8.4333 -1.9489 41 1 1.2486 6.7830 -1.7075 42 1 3.6324 3.7459 1.3463 43 1 1.9747 4.2124 0.8523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608815008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:55 Heat of formation + Delta-G solvation = -70.940185 kcal Electronic energy + Delta-G solvation = -23794.896866 eV Core-core repulsion = 20454.153459 eV Total energy + Delta-G solvation = -3340.743407 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54687 -39.11557 -36.19065 -35.46107 -33.97069 -32.91173 -31.67859 -29.35128 -27.69824 -27.30255 -26.72386 -24.13104 -22.81577 -22.35704 -20.95139 -19.08888 -18.19908 -17.14034 -16.69578 -16.46384 -15.66891 -15.33396 -14.99746 -14.64086 -14.06019 -13.81124 -13.56874 -13.37658 -13.26105 -13.03758 -12.97493 -12.64116 -12.50953 -12.14858 -12.06849 -11.85054 -11.80491 -11.56209 -11.19870 -11.07378 -10.92330 -10.91340 -10.86969 -10.73261 -10.39790 -10.20061 -9.66025 -9.51314 -8.97702 -8.74102 -8.50651 -7.84766 -6.24788 -4.27009 2.91627 3.08535 3.14239 3.19881 3.20909 3.24920 3.69430 4.22640 4.62547 4.79249 5.00666 5.06078 5.10193 5.21288 5.32184 5.37038 5.38345 5.58779 5.59911 5.61664 5.72980 5.74658 5.87022 5.95087 5.99809 6.09208 6.16059 6.22957 6.26561 6.38148 6.46207 6.54470 6.58945 6.63274 6.75651 6.79216 7.30791 7.32833 7.39176 8.04496 8.35168 8.47855 8.75744 8.83524 9.33691 10.87164 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.007200 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.203926 B = 3887.904453 C = 5275.407968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.624 5.624 4 C 0.116 3.884 5 C -0.118 4.118 6 H 0.111 0.889 7 C 0.534 3.466 8 O -0.561 6.561 9 N -0.581 5.581 10 C 0.205 3.795 11 C -0.541 4.541 12 H 0.082 0.918 13 C 0.078 3.922 14 N -0.885 5.885 15 Si 0.868 3.132 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.265 1.265 19 C 0.148 3.852 20 C -0.165 4.165 21 C -0.164 4.164 22 C -0.129 4.129 23 C 0.522 3.478 24 O -0.535 6.535 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.267 0.733 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.131 0.869 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.155 -6.631 -10.367 13.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.359 5.359 4 C -0.007 4.007 5 C -0.139 4.139 6 H 0.129 0.871 7 C 0.321 3.679 8 O -0.442 6.442 9 N -0.311 5.311 10 C 0.084 3.916 11 C -0.579 4.579 12 H 0.100 0.900 13 C -0.126 4.126 14 N -0.522 5.522 15 Si 0.694 3.306 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.190 1.190 19 C 0.045 3.955 20 C -0.223 4.223 21 C -0.222 4.222 22 C -0.169 4.169 23 C 0.310 3.690 24 O -0.412 6.412 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.149 0.851 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.661 -6.825 -9.895 13.287 hybrid contribution 1.196 -0.148 -0.199 1.221 sum -4.466 -6.973 -10.094 13.055 Atomic orbital electron populations 1.22161 0.96039 1.01920 1.02637 1.21274 0.94257 0.81556 1.02776 1.48374 1.66361 1.13612 1.07538 1.22028 1.00499 0.91452 0.86770 1.22153 1.02051 0.93662 0.96068 0.87065 1.19804 0.83561 0.84488 0.80053 1.90552 1.24902 1.82232 1.46470 1.48015 1.16471 1.12251 1.54363 1.19920 0.79660 0.97434 0.94608 1.21340 0.98238 1.45334 0.93017 0.90027 1.24868 0.98528 0.94536 0.94665 1.69875 1.29710 1.46248 1.06384 0.86986 0.84500 0.79705 0.79362 1.19989 1.20881 1.18964 1.20883 0.97711 0.85473 0.91460 1.22221 1.02862 1.01688 0.95541 1.22140 0.98565 1.00202 1.01280 1.22260 1.04988 0.94628 0.95060 1.21108 0.76006 0.87708 0.84151 1.90685 1.53929 1.75404 1.21192 0.92341 0.91754 0.92226 0.90641 0.90219 0.89250 0.90666 0.95226 0.94824 0.92277 0.89719 0.90592 0.92664 0.93210 0.92025 0.92809 0.91128 0.85106 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.24 37.16 0.38 -1.46 16 2 C 0.12 1.47 6.65 -4.04 -0.03 1.44 16 3 N -0.62 -9.25 2.93 -172.42 -0.51 -9.76 16 4 C 0.12 1.61 6.83 -3.12 -0.02 1.59 16 5 C -0.12 -1.92 2.82 -90.14 -0.25 -2.18 16 6 H 0.11 1.78 6.19 -51.93 -0.32 1.46 16 7 C 0.53 9.55 6.23 -10.98 -0.07 9.48 16 8 O -0.56 -10.53 11.95 5.56 0.07 -10.46 16 9 N -0.58 -10.71 2.41 -167.48 -0.40 -11.11 16 10 C 0.20 4.15 3.96 -5.20 -0.02 4.13 16 11 C -0.54 -13.12 8.65 -34.44 -0.30 -13.41 16 12 H 0.08 2.22 8.06 -52.48 -0.42 1.79 16 13 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.89 -24.83 13.96 55.43 0.77 -24.06 16 15 Si 0.87 19.06 27.46 -169.99 -4.67 14.39 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.26 -5.42 6.55 56.52 0.37 -5.05 16 19 C 0.15 2.47 3.27 -67.93 -0.22 2.25 16 20 C -0.17 -2.39 9.03 37.16 0.34 -2.06 16 21 C -0.16 -2.70 9.01 37.16 0.33 -2.36 16 22 C -0.13 -2.36 6.02 -26.74 -0.16 -2.52 16 23 C 0.52 9.56 8.02 -10.86 -0.09 9.48 16 24 O -0.54 -11.57 17.60 5.55 0.10 -11.48 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 30 H 0.09 1.30 6.85 -51.93 -0.36 0.95 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.59 7.35 -51.93 -0.38 0.21 16 33 H 0.03 0.66 5.07 -51.93 -0.26 0.40 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.08 1.40 7.81 -51.93 -0.41 0.99 16 36 H 0.08 1.21 6.33 -51.93 -0.33 0.88 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.23 6.40 -51.93 -0.33 0.90 16 42 H 0.13 2.72 7.24 -51.93 -0.38 2.34 16 43 H 0.10 1.92 7.89 -51.93 -0.41 1.51 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -29.24 341.98 -6.67 -35.91 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.98 Total: 5.14 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.21 Total: 6.27 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.14 Total: -44.93 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.16 Total: -21.94 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.67 Total: 14.39 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.24 -6.67 -35.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608815008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.027 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds