Wall clock time and date at job start Tue Mar 31 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46847 * 2 1 4 4 C 1.34779 * 120.00107 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99574 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00208 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47055 * 179.97438 * 6 4 3 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 4 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47598 * 90.00303 * 11 10 8 13 13 H 1.08005 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99774 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00058 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46761 * 60.00209 * 16 14 12 18 18 H 1.48496 * 109.46664 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47077 * 300.00223 * 16 14 12 20 20 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.46986 * 90.00387 * 20 10 8 22 22 C 1.52997 * 117.49514 * 243.61460 * 21 20 10 23 23 C 1.52997 * 60.00268 * 252.51458 * 22 21 20 24 24 H 1.09002 * 109.46589 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46726 * 299.99515 * 1 2 3 26 26 H 1.08992 * 109.47516 * 59.99284 * 1 2 3 27 27 H 1.09001 * 109.46726 * 240.00484 * 2 1 3 28 28 H 1.08996 * 109.47165 * 120.00400 * 2 1 3 29 29 H 0.97006 * 120.00096 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.47328 * 60.00147 * 6 4 3 31 31 H 1.09004 * 109.47043 * 299.99957 * 6 4 3 32 32 H 1.09001 * 109.46832 * 59.99966 * 7 6 4 33 33 H 1.09000 * 109.47611 * 300.00263 * 7 6 4 34 34 H 1.09008 * 109.47096 * 209.99661 * 11 10 8 35 35 H 1.09003 * 109.47776 * 329.99537 * 11 10 8 36 36 H 0.97002 * 119.99965 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.46971 * 209.99938 * 20 10 8 38 38 H 1.08993 * 109.47768 * 330.00002 * 20 10 8 39 39 H 1.09000 * 115.55217 * 29.32861 * 21 20 10 40 40 H 1.09003 * 117.50408 * 0.02562 * 22 21 20 41 41 H 1.09009 * 117.49806 * 145.01909 * 22 21 20 42 42 H 1.09001 * 117.49351 * 252.51715 * 23 22 21 43 43 H 1.08988 * 117.50123 * 107.49613 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8457 3.0484 0.0001 7 6 5.3756 3.0484 -0.0001 8 6 5.8780 4.4693 -0.0001 9 8 5.0898 5.3910 0.0004 10 7 7.2031 4.7155 -0.0007 11 6 7.6913 6.0967 -0.0002 12 6 7.8596 6.5696 1.4207 13 1 7.6258 5.9076 2.2414 14 6 8.3120 7.8474 1.6731 15 7 8.5962 8.6537 0.6738 16 14 8.5200 8.4336 3.4345 17 1 9.4978 7.5621 4.1340 18 1 9.0150 9.8337 3.4350 19 1 7.2119 8.3713 4.1346 20 6 8.1550 3.6020 -0.0020 21 6 8.4856 3.2153 -1.4449 22 6 8.0837 1.8144 -1.9105 23 6 9.5568 2.1445 -1.6615 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.3879 2.1185 0.0004 30 1 3.4828 3.5617 0.8905 31 1 3.4819 3.5627 -0.8895 32 1 5.7389 2.5349 -0.8903 33 1 5.7391 2.5341 0.8896 34 1 8.6512 6.1430 -0.5146 35 1 6.9730 6.7363 -0.5133 36 1 8.9141 9.5527 0.8514 37 1 9.0679 3.9039 0.5115 38 1 7.7150 2.7472 0.5116 39 1 8.4279 4.0240 -2.1734 40 1 7.5835 1.1684 -1.1890 41 1 7.7613 1.7012 -2.9456 42 1 10.2034 2.2486 -2.5328 43 1 10.0259 1.7156 -0.7762 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609518232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:28 Heat of formation + Delta-G solvation = -64.118160 kcal Electronic energy + Delta-G solvation = -22334.516670 eV Core-core repulsion = 18994.069088 eV Total energy + Delta-G solvation = -3340.447582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.89745 -38.97434 -37.09548 -35.45964 -34.41460 -32.77629 -32.33934 -30.63572 -27.95984 -26.41786 -25.12064 -23.08775 -22.19015 -22.10355 -20.60604 -20.36399 -18.28365 -17.34192 -16.46041 -16.18333 -16.01268 -15.87109 -15.26504 -15.10116 -14.66141 -14.30498 -14.18094 -13.59306 -13.53895 -12.92565 -12.71987 -12.50435 -12.22965 -12.13126 -11.98950 -11.72973 -11.69738 -11.33374 -11.30161 -11.14896 -10.95957 -10.84801 -10.55270 -10.26945 -10.05155 -9.84283 -9.71866 -9.59460 -9.22405 -8.83849 -8.40547 -7.63006 -6.01602 -4.06136 2.63868 3.06315 3.33727 3.37762 3.39900 3.48925 3.88904 4.12082 4.47099 4.62742 4.79021 4.79757 4.99373 5.02740 5.11151 5.14251 5.24524 5.30092 5.32573 5.47722 5.53817 5.59465 5.61340 5.74243 5.79449 5.84122 5.95902 6.05582 6.10832 6.14049 6.19583 6.28671 6.31660 6.54682 7.11108 7.36708 7.47861 7.59087 7.95083 8.16566 8.27000 8.47216 8.93000 9.13446 9.58822 11.06456 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.004174 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.838599 B = 6706.464062 C = 8068.093177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.737 5.737 4 C 0.514 3.486 5 O -0.543 6.543 6 C -0.124 4.124 7 C -0.126 4.126 8 C 0.507 3.493 9 O -0.547 6.547 10 N -0.594 5.594 11 C 0.246 3.754 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.141 3.859 21 C -0.165 4.165 22 C -0.184 4.184 23 C -0.177 4.177 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.402 0.598 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.032 0.968 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.846 -16.684 -3.668 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.390 5.390 4 C 0.302 3.698 5 O -0.420 6.420 6 C -0.164 4.164 7 C -0.166 4.166 8 C 0.294 3.706 9 O -0.425 6.425 10 N -0.324 5.324 11 C 0.127 3.873 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.017 3.983 21 C -0.184 4.184 22 C -0.221 4.221 23 C -0.215 4.215 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.236 0.764 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.609 -16.660 -3.703 19.586 hybrid contribution -0.086 0.695 0.914 1.151 sum -9.695 -15.965 -2.789 18.885 Atomic orbital electron populations 1.22008 0.94561 1.03105 1.02606 1.21268 0.94121 0.83367 1.02279 1.46107 1.07472 1.08802 1.76650 1.20926 0.81912 0.92023 0.74961 1.90682 1.55282 1.46761 1.49246 1.21385 0.96736 0.92469 1.05856 1.21448 0.94329 0.95838 1.04994 1.20310 0.82878 0.90342 0.77056 1.90652 1.54824 1.46535 1.50531 1.48159 1.04518 1.08790 1.70943 1.19267 0.95028 0.75630 0.97373 1.21410 1.44205 0.98506 0.92347 0.92532 1.24928 0.95374 0.96424 0.97353 1.69924 1.45153 1.07607 1.30759 0.86569 0.78483 0.77655 0.84773 1.20254 1.21217 1.20215 1.21034 0.94472 0.89670 0.93133 1.22913 1.03504 0.92546 0.99481 1.23069 0.97874 0.98992 1.02157 1.22887 0.91787 1.03661 1.03128 0.90920 0.91928 0.91938 0.91645 0.91638 0.76378 0.88075 0.88164 0.88597 0.89044 0.95002 0.93919 0.92708 0.89575 0.91208 0.87501 0.88512 0.89323 0.89103 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.03 37.16 0.37 -0.53 16 2 C 0.11 0.95 6.39 -4.04 -0.03 0.92 16 3 N -0.74 -7.05 5.56 -60.30 -0.33 -7.39 16 4 C 0.51 6.66 7.83 -10.99 -0.09 6.58 16 5 O -0.54 -8.75 15.98 5.56 0.09 -8.66 16 6 C -0.12 -1.68 4.99 -27.89 -0.14 -1.82 16 7 C -0.13 -1.98 3.54 -27.88 -0.10 -2.08 16 8 C 0.51 10.51 7.67 -10.98 -0.08 10.42 16 9 O -0.55 -13.38 15.56 5.56 0.09 -13.29 16 10 N -0.59 -12.65 2.46 -175.06 -0.43 -13.08 16 11 C 0.25 6.45 5.16 -5.20 -0.03 6.43 16 12 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 13 H 0.06 1.61 7.81 -52.48 -0.41 1.19 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 16 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.14 2.40 5.49 -4.04 -0.02 2.38 16 21 C -0.17 -2.45 5.95 -90.62 -0.54 -2.98 16 22 C -0.18 -2.31 9.18 -26.73 -0.25 -2.55 16 23 C -0.18 -2.17 10.25 -26.73 -0.27 -2.44 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.40 2.86 8.47 -40.82 -0.35 2.52 16 30 H 0.10 1.36 8.10 -51.93 -0.42 0.94 16 31 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 32 H 0.10 1.44 6.80 -51.93 -0.35 1.08 16 33 H 0.09 1.41 7.36 -51.93 -0.38 1.02 16 34 H 0.03 0.85 8.07 -51.92 -0.42 0.43 16 35 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16 38 H 0.07 1.05 6.17 -51.93 -0.32 0.73 16 39 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.10 1.21 7.87 -51.93 -0.41 0.80 16 41 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 1.07 8.14 -51.94 -0.42 0.64 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -34.26 360.87 -8.25 -42.51 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.23 Total: 2.84 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.59 Total: 0.69 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.03 Total: -46.45 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.18 Total: -21.95 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.26 -8.25 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609518232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.611 kcal (2) G-P(sol) polarization free energy of solvation -34.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds