Wall clock time and date at job start Tue Mar 31 2020 06:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46847 * 2 1 4 4 C 1.34779 * 120.00107 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99574 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00208 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47055 * 179.97438 * 6 4 3 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 4 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47598 * 90.00303 * 11 10 8 13 13 H 1.08005 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99774 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00058 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46761 * 60.00209 * 16 14 12 18 18 H 1.48496 * 109.46664 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47077 * 300.00223 * 16 14 12 20 20 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.46986 * 90.00387 * 20 10 8 22 22 C 1.52997 * 117.49514 * 243.61460 * 21 20 10 23 23 C 1.52997 * 60.00268 * 252.51458 * 22 21 20 24 24 H 1.09002 * 109.46589 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46726 * 299.99515 * 1 2 3 26 26 H 1.08992 * 109.47516 * 59.99284 * 1 2 3 27 27 H 1.09001 * 109.46726 * 240.00484 * 2 1 3 28 28 H 1.08996 * 109.47165 * 120.00400 * 2 1 3 29 29 H 0.97006 * 120.00096 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.47328 * 60.00147 * 6 4 3 31 31 H 1.09004 * 109.47043 * 299.99957 * 6 4 3 32 32 H 1.09001 * 109.46832 * 59.99966 * 7 6 4 33 33 H 1.09000 * 109.47611 * 300.00263 * 7 6 4 34 34 H 1.09008 * 109.47096 * 209.99661 * 11 10 8 35 35 H 1.09003 * 109.47776 * 329.99537 * 11 10 8 36 36 H 0.97002 * 119.99965 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.46971 * 209.99938 * 20 10 8 38 38 H 1.08993 * 109.47768 * 330.00002 * 20 10 8 39 39 H 1.09000 * 115.55217 * 29.32861 * 21 20 10 40 40 H 1.09003 * 117.50408 * 0.02562 * 22 21 20 41 41 H 1.09009 * 117.49806 * 145.01909 * 22 21 20 42 42 H 1.09001 * 117.49351 * 252.51715 * 23 22 21 43 43 H 1.08988 * 117.50123 * 107.49613 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8457 3.0484 0.0001 7 6 5.3756 3.0484 -0.0001 8 6 5.8780 4.4693 -0.0001 9 8 5.0898 5.3910 0.0004 10 7 7.2031 4.7155 -0.0007 11 6 7.6913 6.0967 -0.0002 12 6 7.8596 6.5696 1.4207 13 1 7.6258 5.9076 2.2414 14 6 8.3120 7.8474 1.6731 15 7 8.5962 8.6537 0.6738 16 14 8.5200 8.4336 3.4345 17 1 9.4978 7.5621 4.1340 18 1 9.0150 9.8337 3.4350 19 1 7.2119 8.3713 4.1346 20 6 8.1550 3.6020 -0.0020 21 6 8.4856 3.2153 -1.4449 22 6 8.0837 1.8144 -1.9105 23 6 9.5568 2.1445 -1.6615 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.3879 2.1185 0.0004 30 1 3.4828 3.5617 0.8905 31 1 3.4819 3.5627 -0.8895 32 1 5.7389 2.5349 -0.8903 33 1 5.7391 2.5341 0.8896 34 1 8.6512 6.1430 -0.5146 35 1 6.9730 6.7363 -0.5133 36 1 8.9141 9.5527 0.8514 37 1 9.0679 3.9039 0.5115 38 1 7.7150 2.7472 0.5116 39 1 8.4279 4.0240 -2.1734 40 1 7.5835 1.1684 -1.1890 41 1 7.7613 1.7012 -2.9456 42 1 10.2034 2.2486 -2.5328 43 1 10.0259 1.7156 -0.7762 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609518232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:27 Heat of formation + Delta-G solvation = -86.690664 kcal Electronic energy + Delta-G solvation = -22335.495487 eV Core-core repulsion = 18994.069088 eV Total energy + Delta-G solvation = -3341.426399 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.14372 -40.37111 -38.37183 -36.32067 -36.14442 -34.61389 -33.84349 -31.43016 -29.83999 -27.81468 -26.65501 -24.51017 -23.31036 -23.15687 -21.84488 -21.40676 -19.84811 -18.65679 -18.54067 -17.37910 -17.14644 -17.09595 -16.79927 -16.30070 -16.04682 -15.84349 -15.35436 -14.77655 -14.67076 -14.39568 -14.13406 -13.73966 -13.66527 -13.40879 -13.27474 -12.88906 -12.83550 -12.67021 -12.55406 -12.45861 -12.36455 -12.29777 -12.20062 -12.14648 -11.72921 -11.24834 -10.91589 -10.90692 -10.63008 -10.52145 -10.07596 -9.43875 -8.21218 -6.36161 1.37459 1.41562 1.48957 1.61682 1.82738 2.08271 2.36299 2.51449 2.97249 3.08179 3.56330 3.85101 3.92938 4.03496 4.05427 4.12137 4.21337 4.25039 4.25859 4.32599 4.54292 4.64030 4.74471 4.79992 4.84388 4.90348 4.95049 4.98247 5.05598 5.07127 5.07820 5.23903 5.28039 5.32474 5.33374 5.50000 5.57517 5.85234 6.07561 6.53005 6.70117 6.79468 7.22905 7.28730 7.47434 8.85812 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.004174 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.838599 B = 6706.464062 C = 8068.093177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.110 3.890 3 N -0.723 5.723 4 C 0.519 3.481 5 O -0.576 6.576 6 C -0.120 4.120 7 C -0.109 4.109 8 C 0.500 3.500 9 O -0.592 6.592 10 N -0.599 5.599 11 C 0.264 3.736 12 C -0.544 4.544 13 H 0.054 0.946 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.276 1.276 20 C 0.142 3.858 21 C -0.189 4.189 22 C -0.168 4.168 23 C -0.160 4.160 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.415 0.585 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.019 0.981 35 H -0.001 1.001 36 H 0.267 0.733 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.416 -18.640 -2.856 21.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.014 4.014 3 N -0.376 5.376 4 C 0.306 3.694 5 O -0.456 6.456 6 C -0.161 4.161 7 C -0.149 4.149 8 C 0.290 3.710 9 O -0.474 6.474 10 N -0.329 5.329 11 C 0.142 3.858 12 C -0.583 4.583 13 H 0.072 0.928 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.792 3.208 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.201 1.201 20 C 0.019 3.981 21 C -0.209 4.209 22 C -0.205 4.205 23 C -0.197 4.197 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.252 0.748 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.037 0.963 35 H 0.017 0.983 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.202 -18.654 -2.900 21.458 hybrid contribution 0.066 1.293 0.604 1.429 sum -10.135 -17.361 -2.296 20.234 Atomic orbital electron populations 1.21964 0.92027 1.04192 1.03233 1.21402 0.96148 0.82217 1.01592 1.46042 1.06581 1.10090 1.74851 1.20689 0.82797 0.91035 0.74855 1.90668 1.56330 1.47358 1.51241 1.21321 0.95152 0.93333 1.06246 1.21340 0.95881 0.91816 1.05895 1.21189 0.82131 0.92084 0.75641 1.90619 1.55837 1.48435 1.52469 1.48154 1.05833 1.08018 1.70866 1.18701 0.93088 0.78034 0.95940 1.21689 1.44490 0.99049 0.93033 0.92821 1.25858 0.94765 0.96469 1.01989 1.70049 1.45640 1.08020 1.33123 0.85468 0.78630 0.77568 0.79156 1.18614 1.20346 1.20115 1.21205 0.93165 0.88711 0.94985 1.22653 1.07335 0.93377 0.97522 1.23123 0.98179 0.96418 1.02790 1.23014 0.91754 1.00858 1.04068 0.89631 0.91341 0.91229 0.92281 0.92436 0.74826 0.88003 0.87660 0.87374 0.88092 0.96284 0.98273 0.92401 0.90729 0.88789 0.89750 0.87833 0.88327 0.87883 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 10.03 71.98 0.72 -0.58 16 2 C 0.11 1.64 6.39 86.38 0.55 2.19 16 3 N -0.72 -12.51 5.56 -463.06 -2.57 -15.08 16 4 C 0.52 12.67 7.83 87.66 0.69 13.36 16 5 O -0.58 -17.71 15.98 -3.03 -0.05 -17.76 16 6 C -0.12 -3.14 4.99 29.85 0.15 -2.99 16 7 C -0.11 -3.35 3.54 29.85 0.11 -3.25 16 8 C 0.50 21.15 7.67 87.66 0.67 21.82 16 9 O -0.59 -30.01 15.56 -3.02 -0.05 -30.06 16 10 N -0.60 -26.31 2.46 -826.16 -2.03 -28.34 16 11 C 0.26 14.54 5.16 85.63 0.44 14.98 16 12 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16 13 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 14 C 0.01 0.47 5.46 84.66 0.46 0.94 16 15 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 16 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 C 0.14 4.81 5.49 86.38 0.47 5.29 16 21 C -0.19 -5.53 5.95 -10.79 -0.06 -5.59 16 22 C -0.17 -3.85 9.18 30.59 0.28 -3.57 16 23 C -0.16 -3.56 10.25 30.59 0.31 -3.24 16 24 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.42 5.03 8.47 -92.70 -0.79 4.25 16 30 H 0.10 2.66 8.10 -2.39 -0.02 2.64 16 31 H 0.11 2.65 8.10 -2.38 -0.02 2.63 16 32 H 0.11 3.09 6.80 -2.39 -0.02 3.07 16 33 H 0.10 2.95 7.36 -2.39 -0.02 2.93 16 34 H 0.02 1.08 8.07 -2.38 -0.02 1.06 16 35 H 0.00 -0.05 7.42 -2.39 -0.02 -0.07 16 36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.07 2.66 8.07 -2.38 -0.02 2.64 16 38 H 0.09 2.69 6.17 -2.39 -0.01 2.68 16 39 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.10 2.27 7.87 -2.39 -0.02 2.26 16 41 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -76.15 360.87 2.86 -73.29 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.20 Total: 19.43 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 5.04 Total: 7.76 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -4.32 Total: -99.92 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -0.10 Total: -47.82 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -76.15 2.86 -73.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609518232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.401 kcal (2) G-P(sol) polarization free energy of solvation -76.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds