Wall clock time and date at job start Tue Mar 31 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47496 * 2 1 4 4 C 1.34773 * 120.00321 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99890 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00128 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47058 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47382 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99658 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00452 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63302 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89109 * 233.67613 * 11 10 8 13 13 C 1.53035 * 109.31327 * 305.29292 * 12 11 10 14 14 C 1.50709 * 109.45964 * 181.37529 * 13 12 11 15 15 H 1.07997 * 119.99916 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99864 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00107 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99894 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47199 * 90.00447 * 18 16 14 20 20 H 1.48500 * 109.47216 * 210.00118 * 18 16 14 21 21 H 1.48493 * 109.47310 * 329.99864 * 18 16 14 22 22 C 1.53038 * 109.54175 * 61.36680 * 13 12 11 23 23 C 1.47207 * 120.81153 * 0.14103 * 10 8 7 24 24 H 1.08998 * 109.47378 * 300.00661 * 1 2 3 25 25 H 1.09008 * 109.46760 * 60.00313 * 1 2 3 26 26 H 1.08997 * 109.47420 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47378 * 239.99339 * 2 1 3 28 28 H 1.09008 * 109.46760 * 119.99687 * 2 1 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.47193 * 60.00014 * 6 4 3 31 31 H 1.09004 * 109.47012 * 299.99732 * 6 4 3 32 32 H 1.08998 * 109.47350 * 59.99812 * 7 6 4 33 33 H 1.09003 * 109.47457 * 299.99824 * 7 6 4 34 34 H 1.09002 * 109.58861 * 113.81616 * 11 10 8 35 35 H 1.08996 * 109.58519 * 353.53507 * 11 10 8 36 36 H 1.09003 * 109.49975 * 65.24379 * 12 11 10 37 37 H 1.09000 * 109.49553 * 185.30642 * 12 11 10 38 38 H 1.09004 * 109.45942 * 301.34050 * 13 12 11 39 39 H 0.97004 * 120.00396 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.49557 * 58.58503 * 22 13 12 41 41 H 1.08996 * 109.50003 * 178.68400 * 22 13 12 42 42 H 1.08996 * 109.53610 * 6.53712 * 23 10 8 43 43 H 1.09002 * 109.68003 * 246.23180 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1316 0.7055 0.0005 6 6 3.8459 3.0482 -0.0001 7 6 5.3758 3.0481 0.0001 8 6 5.8783 4.4689 -0.0012 9 8 5.0902 5.3908 -0.0016 10 7 7.2033 4.7152 -0.0007 11 6 7.7084 6.0949 -0.0014 12 6 8.6856 6.2648 -1.1688 13 6 9.7790 5.1985 -1.0729 14 6 10.7612 5.3836 -2.2009 15 1 10.6195 6.1816 -2.9147 16 6 11.8406 4.5344 -2.3214 17 7 12.0134 3.5630 -1.4518 18 14 13.0576 4.7635 -3.7199 19 1 14.1430 5.6796 -3.2865 20 1 13.6387 3.4482 -4.0909 21 1 12.3587 5.3446 -4.8941 22 6 9.1477 3.8078 -1.1701 23 6 8.1757 3.6099 -0.0022 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.3881 2.1184 -0.0004 30 1 3.4821 3.5626 0.8894 31 1 3.4830 3.5615 -0.8906 32 1 5.7392 2.5339 -0.8896 33 1 5.7391 2.5347 0.8903 34 1 8.2230 6.2961 0.9382 35 1 6.8758 6.7887 -0.1177 36 1 8.1496 6.1526 -2.1113 37 1 9.1379 7.2555 -1.1233 38 1 10.2985 5.2957 -0.1196 39 1 12.7731 2.9657 -1.5364 40 1 8.6073 3.7186 -2.1126 41 1 9.9293 3.0494 -1.1253 42 1 7.6502 2.6623 -0.1205 43 1 8.7287 3.6062 0.9371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611675324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:09 Heat of formation + Delta-G solvation = -96.774348 kcal Electronic energy + Delta-G solvation = -22239.028827 eV Core-core repulsion = 18897.165166 eV Total energy + Delta-G solvation = -3341.863660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10404 -39.36786 -36.83239 -35.54435 -33.50254 -32.96417 -31.29473 -30.62833 -29.97425 -26.64326 -25.33043 -23.16431 -22.62578 -22.08195 -20.62826 -19.65493 -18.26118 -17.49918 -16.50561 -16.24371 -16.19653 -15.82870 -15.28569 -15.18771 -14.54371 -14.31136 -13.78018 -13.30408 -13.15508 -13.04964 -12.87450 -12.67024 -12.52624 -12.19209 -12.17543 -11.94199 -11.79528 -11.46595 -11.27092 -11.15785 -10.94255 -10.62606 -10.37189 -10.09247 -9.96553 -9.66218 -9.38739 -9.31058 -9.16025 -8.91150 -8.37117 -7.99242 -6.02356 -4.08571 2.53116 2.92639 2.99410 3.28921 3.36091 3.39400 3.55842 4.41591 4.50993 4.67275 4.73194 4.90318 4.98786 5.08383 5.12414 5.27204 5.45763 5.54334 5.55411 5.68097 5.71105 5.81827 5.85853 5.95235 5.98755 6.12677 6.16325 6.21298 6.33386 6.46436 6.67102 6.89791 7.04481 7.15933 7.26480 7.29656 7.67387 7.92606 7.94122 8.05087 8.06925 8.40845 8.55492 8.94835 9.56584 11.03183 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026522 B = 0.003166 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.475066 B = 8840.682367 C = 9512.823005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.736 5.736 4 C 0.512 3.488 5 O -0.539 6.539 6 C -0.123 4.123 7 C -0.124 4.124 8 C 0.512 3.488 9 O -0.566 6.566 10 N -0.599 5.599 11 C 0.111 3.889 12 C -0.123 4.123 13 C 0.048 3.952 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.124 4.124 23 C 0.101 3.899 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.401 0.599 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.039 0.961 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.326 -4.621 4.543 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.390 5.390 4 C 0.299 3.701 5 O -0.415 6.415 6 C -0.163 4.163 7 C -0.164 4.164 8 C 0.300 3.700 9 O -0.446 6.446 10 N -0.331 5.331 11 C -0.011 4.011 12 C -0.161 4.161 13 C 0.029 3.971 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.163 4.163 23 C -0.021 4.021 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.236 0.764 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.016 -4.981 4.583 20.184 hybrid contribution 0.502 0.309 -0.788 0.984 sum -18.513 -4.673 3.794 19.467 Atomic orbital electron populations 1.22007 0.94509 1.03196 1.02541 1.21288 0.94148 0.83231 1.02440 1.46082 1.07363 1.08878 1.76632 1.20856 0.82023 0.91911 0.75283 1.90724 1.55219 1.46671 1.48900 1.21368 0.96319 0.92855 1.05741 1.21370 0.94532 0.94718 1.05774 1.20507 0.82256 0.91072 0.76174 1.90623 1.55116 1.46633 1.52266 1.48312 1.05278 1.08434 1.71044 1.21686 0.97762 0.82213 0.99460 1.22003 0.97091 1.00820 0.96204 1.18644 0.91316 0.89565 0.97549 1.21202 1.07979 1.14070 1.11760 0.92718 1.24962 0.97695 0.95228 0.96110 1.69835 1.29717 1.17692 1.35802 0.86614 0.81433 0.77415 0.82662 1.20731 1.21242 1.20003 1.22025 0.97083 1.03312 0.93832 1.22147 0.90901 0.87757 1.01312 0.91967 0.91944 0.90840 0.91514 0.91552 0.76449 0.88191 0.88114 0.88120 0.88378 0.92266 0.90405 0.92990 0.92173 0.95458 0.92954 0.94220 0.87700 0.91083 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 10.03 37.16 0.37 -0.41 16 2 C 0.11 0.87 6.39 -4.04 -0.03 0.85 16 3 N -0.74 -6.25 5.56 -60.29 -0.33 -6.58 16 4 C 0.51 6.07 7.83 -10.98 -0.09 5.98 16 5 O -0.54 -8.48 15.98 5.55 0.09 -8.39 16 6 C -0.12 -1.39 4.99 -27.88 -0.14 -1.53 16 7 C -0.12 -1.72 3.34 -27.88 -0.09 -1.81 16 8 C 0.51 8.70 7.70 -10.99 -0.08 8.61 16 9 O -0.57 -10.75 15.39 5.55 0.09 -10.67 16 10 N -0.60 -10.80 2.98 -172.52 -0.51 -11.31 16 11 C 0.11 2.04 6.42 -3.71 -0.02 2.01 16 12 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 13 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 14 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -24.60 11.31 55.43 0.63 -23.98 16 18 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.12 -2.76 5.16 -26.59 -0.14 -2.90 16 23 C 0.10 1.83 6.35 -3.54 -0.02 1.81 16 24 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.40 2.31 8.47 -40.82 -0.35 1.96 16 30 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 31 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 32 H 0.10 1.44 7.65 -51.93 -0.40 1.04 16 33 H 0.10 1.31 7.91 -51.93 -0.41 0.90 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 2.60 6.03 -51.93 -0.31 2.29 16 42 H 0.07 1.14 5.97 -51.93 -0.31 0.83 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -31.48 346.38 -7.98 -39.46 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.17 Total: 1.83 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -0.96 Total: -1.55 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: -0.22 Total: -41.87 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.17 Total: -19.06 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.48 -7.98 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611675324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.311 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds